ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4p11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 224 1e-55
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 224 1e-55
3gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome... 224 1e-55
4dbj|AK120090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
5gb|AY111925.1| Zea mays CL17753_1 mRNA sequence 141 1e-30
6gb|AC115070.9| Mus musculus chromosome 5, clone RP24-406N3, comp... 50 0.004
7gb|AC102594.15| Mus musculus chromosome 5, clone RP23-356G21, co... 50 0.004
8ref|XM_531344.1| PREDICTED: Pan troglodytes LOC467163 (LOC467163... 44 0.23
9gb|AC145879.2| Pan troglodytes BAC clone RP43-20K4 from 7, compl... 44 0.23
10gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complet... 44 0.23
11dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, co... 42 0.90
12gb|AC079031.39| Homo sapiens 12 BAC RP11-503G7 (Roswell Park Can... 42 0.90
13gb|AC025594.5|AC025594 Homo sapiens chromosome 7 clone RP11-309L... 42 0.90
14emb|AL627229.10| Mouse DNA sequence from clone RP23-354L19 on ch... 42 0.90
15emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chr... 42 0.90
16dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VA... 42 0.90
17ref|XM_502702.1| Yarrowia lipolytica CLIB122, YALI0D11506g predi... 40 3.5
18gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 3.5
19gb|AC092862.12| Homo sapiens 12 BAC RP11-547L9 (Roswell Park Can... 40 3.5
20gb|AC096631.2| Homo sapiens chromosome 1 clone RP11-16L9, comple... 40 3.5
21dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.5
22gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.5
23emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 3.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  224 bits (113), Expect = 1e-55
 Identities = 152/165 (92%)
 Strand = Plus / Minus

                                                                           
Query: 32      cgcggtgaaggcggggatggacgtgcgggagagcctgagcccgaagcagaagggggactg 91
               ||||| |||||| |||| ||  |||||||||||||||||||| |||||||||||||||||
Sbjct: 6132508 cgcggcgaaggccgggagggcggtgcgggagagcctgagccccaagcagaagggggactg 6132449

                                                                           
Query: 92      gcaggacgtggcgctcatgagcctctccttcgccgtctacgtctacatctcccagaagat 151
               | |||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 6132448 gaaggacgtcacgctcatgagcttctccttcgccgtctacgtctacatctctcagaagat 6132389

                                                            
Query: 152     cgtgtgcacatactgcgcctgggtctccatgatcaatcactagct 196
               |||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 6132388 cgtgtgcacatattgcgcctggatctccatgatcaatcactagct 6132344
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  224 bits (113), Expect = 1e-55
 Identities = 152/165 (92%)
 Strand = Plus / Minus

                                                                           
Query: 32      cgcggtgaaggcggggatggacgtgcgggagagcctgagcccgaagcagaagggggactg 91
               ||||| |||||| |||| ||  |||||||||||||||||||| |||||||||||||||||
Sbjct: 6131721 cgcggcgaaggccgggagggcggtgcgggagagcctgagccccaagcagaagggggactg 6131662

                                                                           
Query: 92      gcaggacgtggcgctcatgagcctctccttcgccgtctacgtctacatctcccagaagat 151
               | |||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 6131661 gaaggacgtcacgctcatgagcttctccttcgccgtctacgtctacatctctcagaagat 6131602

                                                            
Query: 152     cgtgtgcacatactgcgcctgggtctccatgatcaatcactagct 196
               |||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 6131601 cgtgtgcacatattgcgcctggatctccatgatcaatcactagct 6131557
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>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11,
              complete sequence
          Length = 174865

 Score =  224 bits (113), Expect = 1e-55
 Identities = 152/165 (92%)
 Strand = Plus / Minus

                                                                          
Query: 32     cgcggtgaaggcggggatggacgtgcgggagagcctgagcccgaagcagaagggggactg 91
              ||||| |||||| |||| ||  |||||||||||||||||||| |||||||||||||||||
Sbjct: 125984 cgcggcgaaggccgggagggcggtgcgggagagcctgagccccaagcagaagggggactg 125925

                                                                          
Query: 92     gcaggacgtggcgctcatgagcctctccttcgccgtctacgtctacatctcccagaagat 151
              | |||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 125924 gaaggacgtcacgctcatgagcttctccttcgccgtctacgtctacatctctcagaagat 125865

                                                           
Query: 152    cgtgtgcacatactgcgcctgggtctccatgatcaatcactagct 196
              |||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 125864 cgtgtgcacatattgcgcctggatctccatgatcaatcactagct 125820
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>dbj|AK120090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021A09, full
           insert sequence
          Length = 597

 Score =  216 bits (109), Expect = 3e-53
 Identities = 151/165 (91%)
 Strand = Plus / Plus

                                                                       
Query: 32  cgcggtgaaggcggggatggacgtgcgggagagcctgagcccgaagcagaagggggactg 91
           ||||| |||||| |||| ||  |||||||||||||||||||| |||||||||||||||||
Sbjct: 334 cgcggcgaaggccgggagggcggtgcgggagagcctgagccccaagcagaagggggactg 393

                                                                       
Query: 92  gcaggacgtggcgctcatgagcctctccttcgccgtctacgtctacatctcccagaagat 151
           | |||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 394 gaaggacgtcacgctcatgagcttctccttcgccgtctacgtctacatctctcagaagat 453

                                                        
Query: 152 cgtgtgcacatactgcgcctgggtctccatgatcaatcactagct 196
           |||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct: 454 cgtgtgcacatattgcgcctggatctccaagatcaatcactagct 498
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>gb|AY111925.1| Zea mays CL17753_1 mRNA sequence
          Length = 508

 Score =  141 bits (71), Expect = 1e-30
 Identities = 129/150 (86%)
 Strand = Plus / Minus

                                                                       
Query: 35  ggtgaaggcggggatggacgtgcgggagagcctgagcccgaagcagaagggggactggca 94
           ||||||||| |||||||  | |||||||||||||||||| ||||||||     ||||| |
Sbjct: 250 ggtgaaggccgggatggcggcgcgggagagcctgagccccaagcagaannnnnactggaa 191

                                                                       
Query: 95  ggacgtggcgctcatgagcctctccttcgccgtctacgtctacatctcccagaagatcgt 154
           ||||||  ||||||||||| ||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 190 ggacgtcacgctcatgagcttctccttcgccgtctacgtgtacatctctcagaagctcgt 131

                                         
Query: 155 gtgcacatactgcgcctgggtctccatgat 184
           |||||| |||||||| ||| |||| |||||
Sbjct: 130 gtgcacgtactgcgcttggctctctatgat 101
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>gb|AC115070.9| Mus musculus chromosome 5, clone RP24-406N3, complete sequence
          Length = 148789

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 209   ttacatgtatagtcacatatattta 233
             |||||||||||||||||||||||||
Sbjct: 50580 ttacatgtatagtcacatatattta 50556
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>gb|AC102594.15| Mus musculus chromosome 5, clone RP23-356G21, complete sequence
          Length = 189741

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 209  ttacatgtatagtcacatatattta 233
            |||||||||||||||||||||||||
Sbjct: 2886 ttacatgtatagtcacatatattta 2910
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>ref|XM_531344.1| PREDICTED: Pan troglodytes LOC467163 (LOC467163), mRNA
          Length = 1569

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 59   ggagagcctgagcccgaagcagaagg 84
            ||||||||||||||||||| ||||||
Sbjct: 982  ggagagcctgagcccgaaggagaagg 1007



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 60  gagagcctgagcccgaagcagaagg 84
           |||||||||||||||||| ||||||
Sbjct: 959 gagagcctgagcccgaaggagaagg 983



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  agagcctgagcccgaagcagaagg 84
           ||||||||||||||||| ||||||
Sbjct: 611 agagcctgagcccgaaggagaagg 634
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>gb|AC145879.2| Pan troglodytes BAC clone RP43-20K4 from 7, complete sequence
          Length = 151392

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 203   taattcttacatgtatagtcac 224
             ||||||||||||||||||||||
Sbjct: 55229 taattcttacatgtatagtcac 55250
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>gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complete sequence
          Length = 118869

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 203    taattcttacatgtatagtcac 224
              ||||||||||||||||||||||
Sbjct: 104794 taattcttacatgtatagtcac 104815
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>dbj|AP002086.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, complete sequence
          Length = 217594

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 19    aggcgcgcagcggcgcggtgaaggcggggatgg 51
             ||||||||||||| |||||| ||| ||||||||
Sbjct: 81549 aggcgcgcagcggagcggtggaggaggggatgg 81517
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>gb|AC079031.39| Homo sapiens 12 BAC RP11-503G7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 89059

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 60   gagagcctgagcccgaagcagaagg 84
            |||||||||||||||||| ||||||
Sbjct: 7767 gagagcctgagcccgaaggagaagg 7791
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>gb|AC025594.5|AC025594 Homo sapiens chromosome 7 clone RP11-309L24, complete sequence
          Length = 200197

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 74     gaagcagaagggggactggcaggac 98
              |||||||||| ||||||||||||||
Sbjct: 119178 gaagcagaagagggactggcaggac 119202
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>emb|AL627229.10| Mouse DNA sequence from clone RP23-354L19 on chromosome 4, complete
             sequence
          Length = 149730

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   tacatgtatagtcacatatat 230
             |||||||||||||||||||||
Sbjct: 32859 tacatgtatagtcacatatat 32879
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>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
              sequence
          Length = 179420

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 198    agaattaattcttacatgtat 218
              |||||||||||||||||||||
Sbjct: 111309 agaattaattcttacatgtat 111289
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>dbj|AB039932.1| Agrobacterium rhizogenes plasmid pRi1724 DNA, VAR region, complete cds
          Length = 73934

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 19    aggcgcgcagcggcgcggtgaaggcggggatgg 51
             ||||||||||||| |||||| ||| ||||||||
Sbjct: 41981 aggcgcgcagcggagcggtggaggaggggatgg 41949
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>ref|XM_502702.1| Yarrowia lipolytica CLIB122, YALI0D11506g predicted mRNA
          Length = 5691

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   tgagcccgaagcagaagggg 86
            ||||||||||||||||||||
Sbjct: 5487 tgagcccgaagcagaagggg 5506
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     gcagcggcgcggtgaaggcg 44
              ||||||||||||||||||||
Sbjct: 732946 gcagcggcgcggtgaaggcg 732927
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>gb|AC092862.12| Homo sapiens 12 BAC RP11-547L9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 72001

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   tacatgtatagtcacatatattta 233
             ||||||||| ||||||||||||||
Sbjct: 30564 tacatgtatggtcacatatattta 30541
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>gb|AC096631.2| Homo sapiens chromosome 1 clone RP11-16L9, complete sequence
          Length = 159322

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   ctcagaattaattcttacatgtat 218
             ||||||||||||||| ||||||||
Sbjct: 61640 ctcagaattaattctcacatgtat 61617
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 20      ggcgcgcagcggcgcggtgaaggc 43
               |||||||||| |||||||||||||
Sbjct: 3305209 ggcgcgcagcagcgcggtgaaggc 3305232
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 32      cgcggtgaaggcggggatgg 51
               ||||||||||||||||||||
Sbjct: 3559115 cgcggtgaaggcggggatgg 3559096
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 67      tgagcccgaagcagaagggg 86
               ||||||||||||||||||||
Sbjct: 1433820 tgagcccgaagcagaagggg 1433801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,739,615
Number of Sequences: 3902068
Number of extensions: 1739615
Number of successful extensions: 34462
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34202
Number of HSP's gapped (non-prelim): 260
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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