Clone Information

BLAST Search Result

Clone Name	baak4p09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|X68655.1\|HVCW18 H.vulgare Cw-18 mRNA	373	e-100
2	emb\|X56547.1\|HSBLT4 H. vulgare BLT4 mRNA	357	1e-95
3	emb\|Z37114.1\|HVLTPPA H.vulgare (clone pKG2316) mRNA for lipid tr...	333	1e-88
4	gb\|AF302788.1\|AF302788 Triticum aestivum lipid transfer protein ...	129	4e-27
5	gb\|AY566607.1\| Triticum aestivum lipid transfer protein (LPT1) g...	109	4e-21
6	gb\|AF334185.1\|AF334185 Triticum aestivum lipid transfer protein ...	98	1e-17
7	emb\|Z66528.1\|HVGLTP4X3 H.vulgare ltp4.3 gene	64	2e-07
8	emb\|AJ852557.1\| Triticum aestivum ltp9.5b gene for type 1 non sp...	62	8e-07
9	emb\|AJ784903.1\| Triticum turgidum subsp. durum partial mRNA for ...	50	0.003
10	emb\|AJ784901.1\| Triticum aestivum mRNA for type 1 non-specific l...	50	0.003
11	emb\|Z37115.1\|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid tra...	48	0.012
12	gb\|AC161590.2\| Mus musculus BAC clone RP24-300B21 from chromosom...	46	0.047
13	gb\|AC147480.13\| Mus musculus chromosome 14, clone RP23-429N24, c...	44	0.19
14	gb\|AC154527.2\| Mus musculus BAC clone RP23-221K13 from chromosom...	44	0.19
15	gb\|AC165092.3\| Mus musculus BAC clone RP23-10M2 from chromosome ...	44	0.19
16	gb\|AC007772.6\| Drosophila melanogaster clone BACR19P12, complete...	42	0.73
17	gb\|AC105324.11\| Mus musculus chromosome 15, clone RP24-311E18, c...	42	0.73
18	gb\|AC122926.2\| Mus musculus BAC clone RP23-10E15 from 6, complet...	42	0.73
19	emb\|AL161443.13\| Human DNA sequence from clone RP11-169L18 on ch...	42	0.73
20	emb\|AL157886.13\| Human DNA sequence from clone RP11-59M22 on chr...	42	0.73
21	gb\|AC161196.4\| Mus musculus chromosome 15, clone RP23-319G15, co...	42	0.73
22	gb\|AC161928.4\| Mus musculus chromosome 1, clone RP23-293P15, com...	42	0.73
23	gb\|AC100271.6\| Mus musculus, clone RP23-77E14, complete sequence	42	0.73
24	dbj\|AK095100.1\| Homo sapiens cDNA FLJ37781 fis, clone BRHIP2027054	42	0.73
25	gb\|AC092834.3\| Homo sapiens BAC clone RP13-497K6 from 4, complet...	42	0.73
26	gb\|AC007771.7\|AC007771 Drosophila melanogaster, chromosome 3R, r...	42	0.73
27	gb\|AE003732.3\| Drosophila melanogaster chromosome 3R, section 70...	42	0.73
28	gb\|AC165337.2\| Mus musculus BAC clone RP24-356N8 from chromosome...	40	2.9
29	gb\|AC101713.7\| Mus musculus chromosome 15, clone RP23-282L9, com...	40	2.9
30	ref\|XM_715692.1\| Candida albicans SC5314 retrotransposon Tca2 po...	40	2.9
31	ref\|XM_707589.1\| Candida albicans SC5314 retrotransposon Tca2 po...	40	2.9
32	ref\|XM_707569.1\| Candida albicans SC5314 retrotransposon Tca2 po...	40	2.9
33	gb\|AC157088.2\| Pan troglodytes BAC clone CH251-497H13 from chrom...	40	2.9
34	gb\|AC131920.7\| Mus musculus chromosome 14, clone RP23-450N9, com...	40	2.9
35	gb\|AC122345.4\| Mus musculus BAC clone RP23-366P9 from chromosome...	40	2.9
36	gb\|AC132685.3\| Mus musculus BAC clone RP23-278G24 from chromosom...	40	2.9
37	gb\|AC124699.4\| Mus musculus BAC clone RP24-187B13 from chromosom...	40	2.9
38	ref\|XM_883783.1\| Candida albicans SC5314 hypothetical protein (C...	40	2.9
39	ref\|XM_716201.1\| Candida albicans SC5314 retrotransposon Tca2 po...	40	2.9
40	ref\|XM_705023.1\| Candida albicans SC5314 retrotransposon Tca2 po...	40	2.9
41	gb\|AC091768.4\| Homo sapiens BAC clone RP11-703N5 from 7, complet...	40	2.9
42	gb\|AC117667.9\| Mus musculus chromosome 6, clone RP23-367C6, comp...	40	2.9
43	emb\|AL357374.11\| Human DNA sequence from clone RP11-353C18 on ch...	40	2.9
44	gb\|AC112001.6\| Rattus norvegicus 2 BAC CH230-54E3 (Children's Ho...	40	2.9
45	gb\|AC175700.2\| Tupaia belangeri, clone XX-828E7, complete sequence	40	2.9
46	emb\|Z66529.1\|HVGLTP4X9 H.vulgare Ltp4.2 gene	40	2.9
47	emb\|X77291.1\|SCIILDNA S.cerevisiae YBL0421, YBL0438, YBL0418, YB...	40	2.9
48	emb\|CR536621.7\| Zebrafish DNA sequence from clone CH211-158M1, c...	40	2.9
49	gb\|AC090506.7\| Homo sapiens chromosome 18, clone RP11-675P14, co...	40	2.9
50	gb\|AC105392.1\| Homo sapiens BAC clone RP11-314N14 from 4, comple...	40	2.9
51	gb\|AC034176.8\| Homo sapiens BAC clone RP11-755F5 from 4, complet...	40	2.9
52	gb\|AC096858.3\| Homo sapiens BAC clone RP11-234I24 from 4, comple...	40	2.9
53	gb\|AY275833.1\| Homo sapiens polymerase (DNA directed), alpha (PO...	40	2.9
54	gb\|AC068561.2\|AC068561 Mus musculus strain C57BL6/J chromosome 6...	40	2.9
55	gb\|AF007776.1\| Candida albicans retrotransposon pCal, complete s...	40	2.9
56	gb\|AC127223.5\| Mus musculus BAC clone RP24-484M18 from chromosom...	40	2.9
57	gb\|AC152930.2\| Xenopus tropicalis clone ISB1-158G10, complete se...	40	2.9
58	gb\|AC154346.3\| Mus musculus BAC clone RP24-503E4 from chromosome...	40	2.9
59	gb\|AC158647.2\| Mus musculus 6 BAC RP23-275N13 (Roswell Park Canc...	40	2.9
60	gb\|AC154609.2\| Mus musculus BAC clone RP23-334N13 from 16, compl...	40	2.9
61	emb\|Z35793.1\|SCYBL032W S.cerevisiae chromosome II reading frame ...	40	2.9
62	emb\|Z35792.1\|SCYBL031W S.cerevisiae chromosome II reading frame ...	40	2.9
63	dbj\|AP001351.5\| Homo sapiens genomic DNA, chromosome 11 clone:CT...	40	2.9
64	gb\|AC119962.25\| Mus musculus chromosome 14, clone RP24-468L11, c...	40	2.9
65	emb\|CR550307.8\| Zebrafish DNA sequence from clone DKEY-174E10 in...	40	2.9
66	gb\|AF050215.1\|AF050215 Candida albicans Tca2 retrotransposon gag...	40	2.9
67	emb\|AJ251464.1\|CAL251464 Candida albicans eng1 gene for endo-1,3...	40	2.9
68	gb\|AC148007.3\| Mus musculus BAC clone RP23-273G4 from 1, complet...	40	2.9
69	dbj\|AP006852.1\| Candida albicans genomic DNA, chromosome 7, comp...	40	2.9
70	gb\|U63993.1\|HVU63993 Hordeum vulgare lipid transfer protein (blt...	40	2.9
71	gb\|AC079375.24\| Homo sapiens X BAC RP11-757E1 (Roswell Park Canc...	40	2.9

>emb|X68655.1|HVCW18 H.vulgare Cw-18 mRNA
          Length = 732

 Score =  373 bits (188), Expect = e-100
 Identities = 210/216 (97%), Gaps = 1/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atatatacatatacatgaataaatcctccgttatgttctccatgggagagagagaggagt 61
           |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| 
Sbjct: 495 atatatacatatacatgaataaatcctctgttatgatctccatgggagagagaggggagg 554

                                                                       
Query: 62  acgtacgctgagccagctctacttggccgctcactgttgtatcggtttttgtatcagtgt 121
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 555 acgtacgctgagccagctctacatggccgctcactgttgtatcggtttt-gtatcagtgt 613

                                                                       
Query: 122 ttgattgtttgttcactccctttgaggagacacatacgggagtttgctgtacgttgtacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttgattgtttgttcactccctttgaggagacacatacgggagtttgctgtacgttgtacc 673

                                               
Query: 182 atgggcacttatggtatatggattataaattaatct 217
           ||||||||||||||||||||||||||||||||||||
Sbjct: 674 atgggcacttatggtatatggattataaattaatct 709

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>emb|X56547.1|HSBLT4 H. vulgare BLT4 mRNA
          Length = 724

 Score =  357 bits (180), Expect = 1e-95
 Identities = 209/216 (96%), Gaps = 2/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atatatacatatacatgaataaatcctccgttatgttctccatgggagagagagaggagt 61
           |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||| 
Sbjct: 480 atatatacatatacatgaataaatcctctgttatgatctccatgagagagagag-ggagg 538

                                                                       
Query: 62  acgtacgctgagccagctctacttggccgctcactgttgtatcggtttttgtatcagtgt 121
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 539 acgtacgctgagccagctctacatggccgctcactgttgtatcggtttt-gtatcagtgt 597

                                                                       
Query: 122 ttgattgtttgttcactccctttgaggagacacatacgggagtttgctgtacgttgtacc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgattgtttgttcactccctttgaggagacacatacgggagtttgctgtacgttgtacc 657

                                               
Query: 182 atgggcacttatggtatatggattataaattaatct 217
           ||||||||||||||||||||||||||||||||||||
Sbjct: 658 atgggcacttatggtatatggattataaattaatct 693

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>emb|Z37114.1|HVLTPPA H.vulgare (clone pKG2316) mRNA for lipid transfer protein precursor
          Length = 627

 Score =  333 bits (168), Expect = 1e-88
 Identities = 193/200 (96%), Gaps = 1/200 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atatatacatatacatgaataaatcctccgttatgttctccatgggagagagagaggagt 61
           |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| 
Sbjct: 424 atatatacatatacatgaataaatcctctgttatgatctccatgggagagagaggggagg 483

                                                                       
Query: 62  acgtacgctgagccagctctacttggccgctcactgttgtatcggtttttgtatcagtgt 121
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 484 acgtacgctgagccagctctacatggccgctcactgttgtatcggtttt-gtatcagtgt 542

                                                                       
Query: 122 ttgattgtttgttcactccctttgaggagacacatacgggagtttgctgtacgttgtacc 181
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttgattgtttgttcactccctttaaggagacacatacgggagtttgctgtacgttgtacc 602

                               
Query: 182 atgggcacttatggtatatg 201
           ||||||||||||||||||||
Sbjct: 603 atgggcacttatggtatatg 622

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>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA,
           complete cds
          Length = 737

 Score =  129 bits (65), Expect = 4e-27
 Identities = 166/197 (84%), Gaps = 7/197 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   atatatacatatacatgaataaatcctccgttatgttctccatgggagagagagaggagt 61
           ||||| |||||||||||||||||| ||| | |||| |||||||| |||||| ||  ||||
Sbjct: 498 atatacacatatacatgaataaatgctctgatatgatctccatgtgagagacag--gagt 555

                                                                       
Query: 62  acgtacgctgagccagctctacttggccgctcactgttgtatcggtttttgtatcagtgt 121
           |||||||  ||||||||||| | | ||||  ||||||||||||  |||| ||||||| ||
Sbjct: 556 acgtacgtcgagccagctctgcatagccggccactgttgtatctatttt-gtatcagcgt 614

                                                                       
Query: 122 ttgattgtttgttcactccctttgaggagacacatacgggagtttgctgtacgttgtacc 181
           ||||||||| ||||||||||||||||    || | ||||||||||| ||||| |||||||
Sbjct: 615 ttgattgttcgttcactccctttgag----cagagacgggagtttgttgtactttgtacc 670

                            
Query: 182 atgggcacttatggtat 198
           ||| ||||| |||||||
Sbjct: 671 atgtgcactcatggtat 687

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>gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) gene, complete cds
          Length = 3448

 Score =  109 bits (55), Expect = 4e-21
 Identities = 125/146 (85%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                        
Query: 2    atatatacatatacatgaataaatcctccgttatgttctccatgggagagagagaggagt 61
            ||||| |||||||||||||||||| ||| | |||| |||||||| |||||| ||  ||||
Sbjct: 3294 atatacacatatacatgaataaatgctctgatatgatctccatgtgagagacag--gagt 3351

                                                                        
Query: 62   acgtacgctgagccagctctacttggccgctcactgttgtatcggtttttgtatcagtgt 121
            |||||||  ||||||||||| | | ||||  ||||||||||||  |||| ||||||| ||
Sbjct: 3352 acgtacgtcgagccagctctgcatagccggccactgttgtatctatttt-gtatcagcgt 3410

                                      
Query: 122  ttgattgtttgttcactccctttgag 147
            ||||||||| ||||||||||||||||
Sbjct: 3411 ttgattgttcgttcactccctttgag 3436

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>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA,
           complete cds
          Length = 730

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 179/217 (82%), Gaps = 9/217 (4%)
 Strand = Plus / Plus

                                                                       
Query: 2   atatatacatatacatgaataaatcctccgttatgttctccatgggagagagagaggagt 61
           |||||||||||||||||||||||| ||| | |||| |||||||  | |||||| ||||||
Sbjct: 503 atatatacatatacatgaataaatgctctgatatgatctccat--gtgagagataggagt 560

                                                                       
Query: 62  acgtacgctgagccagctctacttggccgctcactgttgtatcggtttttgtatcagtgt 121
           ||||||   ||||||||| | | | || |  ||||||||||||   ||||||||||| ||
Sbjct: 561 acgtacatcgagccagctttgcatagctggccactgttgtatc-tattttgtatcagcgt 619

                                                                       
Query: 122 ttgattgtttgttcactccctttgag-gagacacatacgggagtttgctgtacgttgtac 180
           ||||||||| ||||||||||||||||  ||||    ||||||||||| ||||| ||||||
Sbjct: 620 ttgattgttcgttcactccctttgagctagac----acgggagtttgttgtactttgtac 675

                                                
Query: 181 catgggcacttatggtatatggattataaattaatct 217
            |||  | |||||  |||| |||||||||||||||||
Sbjct: 676 gatgtacgcttatcatata-ggattataaattaatct 711

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>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene
          Length = 1862

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 54/60 (90%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   gagagagagaggagtacgtacgctgagccagctctacttggcc-gctcactgttgtatcg 105
            ||||||||||| |||||||||| |||||||||||| | ||||| || |||||||||||||
Sbjct: 1521 gagagagagagaagtacgtacgttgagccagctctgcatggccggcacactgttgtatcg 1580

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>emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non specific lipid
           transfer protein precursor
          Length = 496

 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 2   atatatacatatacatgaataaatcctccgttatgttctccatgggagaga 52
           |||||||||||||||||||||||| ||| | |||| |||||||| ||||||
Sbjct: 444 atatatacatatacatgaataaatgctctgatatgatctccatgtgagaga 494

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>emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for type 1 non-specific
           lipid transfer protein precursor (ltp9.2 gene)
          Length = 604

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 161 gagtttgctgtacgttgtaccatgggcacttatggtatatggatt 205
           ||||||||||||| |||||||||| | |||| || ||||||||||
Sbjct: 537 gagtttgctgtactttgtaccatgtgtacttttgatatatggatt 581



 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 47  gagagagagaggagtacgtacg 68
           ||||||||||||||||||||||
Sbjct: 451 gagagagagaggagtacgtacg 472

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>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer
           protein precursor (ltp9.2 gene)
          Length = 708

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 161 gagtttgctgtacgttgtaccatgggcacttatggtatatggatt 205
           ||||||||||||| |||||||||| | |||| || ||||||||||
Sbjct: 640 gagtttgctgtactttgtaccatgtgtacttttgatatatggatt 684



 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 47  gagagagagaggagtacgtacg 68
           ||||||||||||||||||||||
Sbjct: 554 gagagagagaggagtacgtacg 575

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>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor
          Length = 691

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 50  agagagaggagtacgtacgctgagccagctct 81
           |||||||| |||||||||| ||||||||||||
Sbjct: 518 agagagagaagtacgtacgttgagccagctct 549

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>gb|AC161590.2| Mus musculus BAC clone RP24-300B21 from chromosome 9, complete sequence
          Length = 162840

 Score = 46.1 bits (23), Expect = 0.047
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 4      atatacatatacatgaataaatc 26
              |||||||||||||||||||||||
Sbjct: 121841 atatacatatacatgaataaatc 121819

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>gb|AC147480.13| Mus musculus chromosome 14, clone RP23-429N24, complete sequence
          Length = 210000

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2     atatatacatatacatgaataaatcc 27
             ||||||||||||| ||||||||||||
Sbjct: 64212 atatatacatatatatgaataaatcc 64237

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>gb|AC154527.2| Mus musculus BAC clone RP23-221K13 from chromosome 14, complete
             sequence
          Length = 215802

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2     atatatacatatacatgaataaatcc 27
             ||||||||||||| ||||||||||||
Sbjct: 21343 atatatacatatatatgaataaatcc 21318

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>gb|AC165092.3| Mus musculus BAC clone RP23-10M2 from chromosome 14, complete sequence
          Length = 215949

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2     atatatacatatacatgaataaatcc 27
             ||||||||||||| ||||||||||||
Sbjct: 77642 atatatacatatatatgaataaatcc 77667

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>gb|AC007772.6| Drosophila melanogaster clone BACR19P12, complete sequence
          Length = 186607

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     atatatacatatacatgaata 22
             |||||||||||||||||||||
Sbjct: 55757 atatatacatatacatgaata 55737

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>gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, complete sequence
          Length = 171004

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     atatatacatatacatgaata 22
             |||||||||||||||||||||
Sbjct: 12422 atatatacatatacatgaata 12442

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>gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complete sequence
          Length = 193055

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      atatatacatatacatgaata 22
              |||||||||||||||||||||
Sbjct: 137356 atatatacatatacatgaata 137376

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>emb|AL161443.13| Human DNA sequence from clone RP11-169L18 on chromosome 9 Contains the
             3' end of the JMJD2C gene for jumonji domain containing
             2C, complete sequence
          Length = 140439

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 190   ttatggtatatggattataaattaa 214
             |||||||||||||||||| ||||||
Sbjct: 29664 ttatggtatatggattatcaattaa 29640

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>emb|AL157886.13| Human DNA sequence from clone RP11-59M22 on chromosome 9q21.31-21.33,
              complete sequence
          Length = 156956

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      atatatacatatacatgaata 22
              |||||||||||||||||||||
Sbjct: 121206 atatatacatatacatgaata 121186

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>gb|AC161196.4| Mus musculus chromosome 15, clone RP23-319G15, complete sequence
          Length = 177873

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      atatatacatatacatgaata 22
              |||||||||||||||||||||
Sbjct: 165379 atatatacatatacatgaata 165399

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>gb|AC161928.4| Mus musculus chromosome 1, clone RP23-293P15, complete sequence
          Length = 202671

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     atatatacatatacatgaata 22
             |||||||||||||||||||||
Sbjct: 61200 atatatacatatacatgaata 61180

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>gb|AC100271.6| Mus musculus, clone RP23-77E14, complete sequence
          Length = 210574

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     atatatacatatacatgaata 22
             |||||||||||||||||||||
Sbjct: 15158 atatatacatatacatgaata 15138

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>dbj|AK095100.1| Homo sapiens cDNA FLJ37781 fis, clone BRHIP2027054
          Length = 2772

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 2    atatatacatatacatgaata 22
            |||||||||||||||||||||
Sbjct: 1833 atatatacatatacatgaata 1813

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>gb|AC092834.3| Homo sapiens BAC clone RP13-497K6 from 4, complete sequence
          Length = 146708

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      atatatacatatacatgaata 22
              |||||||||||||||||||||
Sbjct: 102442 atatatacatatacatgaata 102462

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>gb|AC007771.7|AC007771 Drosophila melanogaster, chromosome 3R, region 92E-92F, BAC clone
              BACR26M03, complete sequence
          Length = 197071

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      atatatacatatacatgaata 22
              |||||||||||||||||||||
Sbjct: 181507 atatatacatatacatgaata 181487

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>gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70 of 118 of the
             complete sequence
          Length = 224529

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     atatatacatatacatgaata 22
             |||||||||||||||||||||
Sbjct: 17781 atatatacatatacatgaata 17761

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>gb|AC165337.2| Mus musculus BAC clone RP24-356N8 from chromosome 12, complete sequence
          Length = 155881

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      atacatatacatgaataaat 25
              ||||||||||||||||||||
Sbjct: 118823 atacatatacatgaataaat 118842

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>gb|AC101713.7| Mus musculus chromosome 15, clone RP23-282L9, complete sequence
          Length = 189145

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      atatatacatatacatgaataaat 25
              |||||||||||||||| |||||||
Sbjct: 151325 atatatacatatacataaataaat 151302

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>ref|XM_715692.1| Candida albicans SC5314 retrotransposon Tca2 polyprotein
            (CaO19_13809), mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 1907 ttttgtatcagtgtttgatt 1888

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>ref|XM_707589.1| Candida albicans SC5314 retrotransposon Tca2 polyprotein
            (CaO19.9908), mRNA
          Length = 4701

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 4682 ttttgtatcagtgtttgatt 4663

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>ref|XM_707569.1| Candida albicans SC5314 retrotransposon Tca2 polyprotein
            (CaO19.2372), mRNA
          Length = 4701

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 4682 ttttgtatcagtgtttgatt 4663

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>gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chromosome unknown, complete
              sequence
          Length = 220527

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 168761 tatatacatatacatgaata 168742



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 168737 tatatacatatacatgaata 168718



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 168713 tatatacatatacatgaata 168694



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 168689 tatatacatatacatgaata 168670



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 168665 tatatacatatacatgaata 168646



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 168641 tatatacatatacatgaata 168622

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>gb|AC131920.7| Mus musculus chromosome 14, clone RP23-450N9, complete sequence
          Length = 201436

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tatacatatacatgaataaa 24
             ||||||||||||||||||||
Sbjct: 56881 tatacatatacatgaataaa 56900

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>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence
          Length = 199923

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     atacatatacatgaataaat 25
             ||||||||||||||||||||
Sbjct: 95881 atacatatacatgaataaat 95900

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>gb|AC132685.3| Mus musculus BAC clone RP23-278G24 from chromosome 7, complete sequence
          Length = 188989

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      atatatacatatacatgaataaat 25
              ||||||||||||| ||||||||||
Sbjct: 183666 atatatacatatatatgaataaat 183689

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>gb|AC124699.4| Mus musculus BAC clone RP24-187B13 from chromosome 1, complete sequence
          Length = 177793

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     atatatacatatacatgaat 21
             ||||||||||||||||||||
Sbjct: 21884 atatatacatatacatgaat 21903

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>ref|XM_883783.1| Candida albicans SC5314 hypothetical protein (CaJ7.0300) partial mRNA
          Length = 4701

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 4682 ttttgtatcagtgtttgatt 4663

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>ref|XM_716201.1| Candida albicans SC5314 retrotransposon Tca2 polyprotein (POL97)
            partial mRNA
          Length = 1926

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 1907 ttttgtatcagtgtttgatt 1888

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>ref|XM_705023.1| Candida albicans SC5314 retrotransposon Tca2 polyprotein (POL98)
            partial mRNA
          Length = 4701

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 4682 ttttgtatcagtgtttgatt 4663

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>gb|AC091768.4| Homo sapiens BAC clone RP11-703N5 from 7, complete sequence
          Length = 104955

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     atatacatatacatgaataa 23
             ||||||||||||||||||||
Sbjct: 92846 atatacatatacatgaataa 92865

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>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence
          Length = 134538

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    tatacatatacatgaataaa 24
            ||||||||||||||||||||
Sbjct: 6885 tatacatatacatgaataaa 6904

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>emb|AL357374.11| Human DNA sequence from clone RP11-353C18 on chromosome 20 Contains the
             5' end of the NFS1 gene for nitrogen fixation 1 (S.
             cerevisiae), the C20orf52 gene, the RNPC2 gene for
             RNA-binding region (RNP1, RRM) containing 2, a BXDC1
             pseudogene, the 5' end of the C20orf104 gene and three CpG
             islands, complete sequence
          Length = 80565

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tatatacatatacatgaata 22
             ||||||||||||||||||||
Sbjct: 62482 tatatacatatacatgaata 62501



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tatatacatatacatgaata 22
             ||||||||||||||||||||
Sbjct: 62442 tatatacatatacatgaata 62461

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>gb|AC112001.6| Rattus norvegicus 2 BAC CH230-54E3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 225052

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      atatatacatatacatgaataaat 25
              ||||||| ||||||||||||||||
Sbjct: 192345 atatatatatatacatgaataaat 192322

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>gb|AC175700.2| Tupaia belangeri, clone XX-828E7, complete sequence
          Length = 38645

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gatatatacatatacatgaa 20
             ||||||||||||||||||||
Sbjct: 17862 gatatatacatatacatgaa 17843

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>emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene
          Length = 1567

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 47   gagagagagaggagtacgtacgctgagccagctctacttggccg 90
            ||||||||||||||| |||| | |||||||| ||| | ||||||
Sbjct: 1122 gagagagagaggagtgcgtatgttgagccagttctgcatggccg 1165

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>emb|X77291.1|SCIILDNA S.cerevisiae YBL0421, YBL0438, YBL0418, YBL0422, YBL0423, YBL0426,
             YBL0425, YBL0424, and YBL0437 genes
          Length = 18100

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     atacatatacatgaataaat 25
             ||||||||||||||||||||
Sbjct: 16370 atacatatacatgaataaat 16389

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>emb|CR536621.7| Zebrafish DNA sequence from clone CH211-158M1, complete sequence
          Length = 155945

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     atatatacatatacatgaataaat 25
             |||||||||||||||| |||||||
Sbjct: 76806 atatatacatatacataaataaat 76829

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>gb|AC090506.7| Homo sapiens chromosome 18, clone RP11-675P14, complete sequence
          Length = 188609

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      atatatacatatacatgaataaat 25
              |||||||||||||||| |||||||
Sbjct: 141689 atatatacatatacataaataaat 141712

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>gb|AC105392.1| Homo sapiens BAC clone RP11-314N14 from 4, complete sequence
          Length = 24023

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   atatacatatacatgaataa 23
           ||||||||||||||||||||
Sbjct: 983 atatacatatacatgaataa 964

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>gb|AC034176.8| Homo sapiens BAC clone RP11-755F5 from 4, complete sequence
          Length = 193100

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      atatacatatacatgaataa 23
              ||||||||||||||||||||
Sbjct: 192083 atatacatatacatgaataa 192064

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>gb|AC096858.3| Homo sapiens BAC clone RP11-234I24 from 4, complete sequence
          Length = 17316

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   attgtttgttcactcccttt 144
             ||||||||||||||||||||
Sbjct: 10498 attgtttgttcactcccttt 10517

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>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds
          Length = 304837

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     atatatacatatacatgaataaat 25
             |||||||||||||||| |||||||
Sbjct: 98048 atatatacatatacataaataaat 98025

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>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete
              sequence
          Length = 230839

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 206835 tatatacatatacatgaata 206854

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>gb|AF007776.1| Candida albicans retrotransposon pCal, complete sequence
          Length = 6426

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 6084 ttttgtatcagtgtttgatt 6065

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>gb|AC127223.5| Mus musculus BAC clone RP24-484M18 from chromosome 7, complete sequence
          Length = 168323

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     atatatacatatacatgaataaat 25
             ||||||||||||| ||||||||||
Sbjct: 33052 atatatacatatatatgaataaat 33075

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>gb|AC152930.2| Xenopus tropicalis clone ISB1-158G10, complete sequence
          Length = 95175

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gatatatacatatacatgaa 20
             ||||||||||||||||||||
Sbjct: 61854 gatatatacatatacatgaa 61835

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>gb|AC154346.3| Mus musculus BAC clone RP24-503E4 from chromosome 17, complete
            sequence
          Length = 167603

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    tatatacatatacatgaata 22
            ||||||||||||||||||||
Sbjct: 9167 tatatacatatacatgaata 9186

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>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208007

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tatatacatatacatgaata 22
              ||||||||||||||||||||
Sbjct: 133373 tatatacatatacatgaata 133392

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>gb|AC154609.2| Mus musculus BAC clone RP23-334N13 from 16, complete sequence
          Length = 202556

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     tccatgggagagagagagga 59
              ||||||||||||||||||||
Sbjct: 187866 tccatgggagagagagagga 187847

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>emb|Z35793.1|SCYBL032W S.cerevisiae chromosome II reading frame ORF YBL032w
          Length = 2005

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    atacatatacatgaataaat 25
            ||||||||||||||||||||
Sbjct: 1783 atacatatacatgaataaat 1764

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>emb|Z35792.1|SCYBL031W S.cerevisiae chromosome II reading frame ORF YBL031w
          Length = 1717

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   atacatatacatgaataaat 25
           ||||||||||||||||||||
Sbjct: 150 atacatatacatgaataaat 131

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>dbj|AP001351.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2383M3, complete
             sequence
          Length = 90738

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     atatatacatatacatgaataaat 25
             ||||||| ||||||||||||||||
Sbjct: 14884 atatatatatatacatgaataaat 14861

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>gb|AC119962.25| Mus musculus chromosome 14, clone RP24-468L11, complete sequence
          Length = 141600

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     atatatacatatacatgaataaat 25
             ||||||||||||| ||||||||||
Sbjct: 56892 atatatacatatatatgaataaat 56915

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>emb|CR550307.8| Zebrafish DNA sequence from clone DKEY-174E10 in linkage group 11,
             complete sequence
          Length = 178645

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     atatatacatatacatgaataaat 25
             |||||||||||||||| |||||||
Sbjct: 39271 atatatacatatacataaataaat 39248

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>gb|AF050215.1|AF050215 Candida albicans Tca2 retrotransposon gag polyprotein (gag) and pol
            polyprotein (pol) genes, complete cds
          Length = 6980

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 6290 ttttgtatcagtgtttgatt 6271

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>emb|AJ251464.1|CAL251464 Candida albicans eng1 gene for endo-1,3-beta-glucanase and pCa1
            retrotransposon
          Length = 4872

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  ttttgtatcagtgtttgatt 127
            ||||||||||||||||||||
Sbjct: 4783 ttttgtatcagtgtttgatt 4802

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>gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complete sequence
          Length = 184937

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      atatatacatatacatgaataaat 25
              ||||||||||||| ||||||||||
Sbjct: 116723 atatatacatatatatgaataaat 116746

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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    ttttgtatcagtgtttgatt 127
              ||||||||||||||||||||
Sbjct: 554271 ttttgtatcagtgtttgatt 554290

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>gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt4.9) gene, complete cds
          Length = 3238

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 47   gagagagagaggagtacgtacgctgagccagctctacttggccg 90
            ||||||||||||||| |||| | |||||||| ||| | ||||||
Sbjct: 2518 gagagagagaggagtgcgtatgttgagccagttctgcatggccg 2561

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>gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172649

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      atatatacatatacatgaataaat 25
              |||||||||||||||| |||||||
Sbjct: 110901 atatatacatatacataaataaat 110924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,066,432
Number of Sequences: 3902068
Number of extensions: 7066432
Number of successful extensions: 542791
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 542294
Number of HSP's gapped (non-prelim): 485
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result