ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4p08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV90) Length = 660 Score = 624 bits (315), Expect = e-176 Identities = 387/411 (94%) Strand = Plus / Plus Query: 1 cgagcacctcgatctgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacg 60 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 197 cgagcacctcgatctgggacgagatggcgttcagcggccctgcgccggagcgcatcaacg 256 Query: 61 ggcggctagccatggtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacg 120 |||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||| Sbjct: 257 ggcggctagccatggtgggcttcgtgacggcgcttgcggtggaggcagggcgcggcgacg 316 Query: 121 ggctcctctcgcagctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcgg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 ggctcctctcgcagctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcgg 376 Query: 181 tgctgtccatggcgtcgctggtgccgcttctccagggcgagagcgccgagggcagagccg 240 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 377 tgctgtccatggcgtcgctggtgccgctgctccagggcgagagcgccgagggcagagccg 436 Query: 241 gcaccatcatgaacgccaacgcggagctctggaatggccgtttcgccatgctcggactcg 300 || |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 437 gcgccatcatgaacgccaacgcggaactctggaacggccgcttcgccatgctcggactcg 496 Query: 301 tcgctctggcggccacggagatcatcacgggcgcccccttcatcaacgtgtagaataaac 360 |||| ||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 497 tcgcgctggccgccaccgagatcatcaccggcgcgcctttcatcaacgtgtagaataaaa 556 Query: 361 tagctttcttgccgacacgataacacaacttgtacttatctagtaggacat 411 ||||||| || ||||| ||||||||||| |||||||| |||||||||||| Sbjct: 557 tagctttgctgtcgacaggataacacaacatgtacttagctagtaggacat 607
>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV60) Length = 764 Score = 585 bits (295), Expect = e-164 Identities = 382/411 (92%) Strand = Plus / Plus Query: 1 cgagcacctcgatctgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacg 60 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 278 cgagcacctccatctgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacg 337 Query: 61 ggcggctagccatggtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacg 120 |||||||||||||||| |||||||| ||||| || || ||||||||||| |||||||||| Sbjct: 338 ggcggctagccatggtgggcttcgtgacggcgctggctgtggaggcaggccgcggcgacg 397 Query: 121 ggctcctctcgcagctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcgg 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 ggctcctctcgcagctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcga 457 Query: 181 tgctgtccatggcgtcgctggtgccgcttctccagggcgagagcgccgagggcagagccg 240 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 458 tgctgtccatggcgtcgctggtgccgctgctccagggcgagagcgccgagggcagagccg 517 Query: 241 gcaccatcatgaacgccaacgcggagctctggaatggccgtttcgccatgctcggactcg 300 || ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| Sbjct: 518 gcgccatcatgaacgccaacgcggagctctggaacggccgcttcgccatgatcggactcg 577 Query: 301 tcgctctggcggccacggagatcatcacgggcgcccccttcatcaacgtgtagaataaac 360 |||| || || ||||| ||||||||||| ||| |||||||||||||||||||||| ||| Sbjct: 578 tcgcgctcgccgccaccgagatcatcaccggcacccccttcatcaacgtgtagaagaaaa 637 Query: 361 tagctttcttgccgacacgataacacaacttgtacttatctagtaggacat 411 ||||||| || |||| ||||||||||| |||||||| |||||||||||| Sbjct: 638 tagctttgctgtcgaccggataacacaacctgtacttagctagtaggacat 688
>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early light-inducible protein (ELIP), complete cds Length = 818 Score = 438 bits (221), Expect = e-120 Identities = 393/450 (87%), Gaps = 9/450 (2%) Strand = Plus / Plus Query: 1 cgagcacctcgatctgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacg 60 |||||||||| |||||||||||| |||||||||||||||| |||||||||||||| || | Sbjct: 287 cgagcacctctatctgggacgcgctggcgttcagcggccctgcgccggagcgcattaatg 346 Query: 61 ggcggctagccatggtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacg 120 |||| || |||||||| || ||||| ||||| || || ||||||||||| |||||||||| Sbjct: 347 ggcgcctggccatggtgggtttcgtgacggcgctcgccgtggaggcagggcgcggcgacg 406 Query: 121 ggctcctctcgcagctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcgg 180 ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 407 ggctcctttcgcagctcggcagcggcaccgggcaggcgtggttcgcctactccgtggcgt 466 Query: 181 tgctgtccatggcgtcgctggtgccgcttctccagggcgagagcgccgagggcagagccg 240 ||| ||| | | || ||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 467 ggctatccgtatcttctctggtgccgctgctccaaggagagagcgccgagggcagagccg 526 Query: 241 gcaccatcatgaacgccaacgcggagctctggaatggccgtttcgccatgctcggactcg 300 | | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 527 gtatcatcatgaacgccaacgcggagctctggaacggccgcttcgccatgctcggactcg 586 Query: 301 tcgctctggcggccacggagatcatcacgggcgcccccttcatcaacgtgtagaataaac 360 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || || Sbjct: 587 tcgctctggcggcaacggagatcatcactggcgcgcccttcatcaacgtgtaaaactaa- 645 Query: 361 tagctttcttgccgacacgataacacaacttgtacttatctagtaggacatctggacatg 420 ||||||| ||| |||| || ||||||| |||||||| ||||||| ||||| Sbjct: 646 tagctttgttgtcgaccggacaacacaaactgtacttagttagtagg--------acatg 697 Query: 421 taaatgatgataactgatcatcctcttatt 450 |||||||||| |||||||||||||| |||| Sbjct: 698 taaatgatgagaactgatcatcctcgtatt 727
>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds; nuclear gene for chloroplast product Length = 852 Score = 149 bits (75), Expect = 1e-32 Identities = 278/345 (80%), Gaps = 3/345 (0%) Strand = Plus / Plus Query: 13 tctgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagcca 72 ||||||||||| ||||||||||||| || ||||||||||| |||||||||||||| || | Sbjct: 316 tctgggacgcgctggcgttcagcgggcccgcgccggagcggatcaacgggcggctggcga 375 Query: 73 tggtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgc 132 |||| |||||||| | || || || || ||||| ||||||||||| ||||||| Sbjct: 376 tggtgggcttcgtgtccgcgctcgccgtcgaggccacccgcggcgacggcatcctctc-- 433 Query: 133 agctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatgg 192 || |||| |||| |||| | ||||||||||| ||||||| || || |||||| | Sbjct: 434 -gccaggcaacggcgccggcctcgcgtggttcgcgtacaccgccgccgtcctgtccgccg 492 Query: 193 cgtcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatga 252 |||| ||||||||||| |||||||| ||||||||||||||||| |||| |||||| Sbjct: 493 cgtccctggtgccgctgctccagggggagagcgccgagggcaggagcggccggttcatga 552 Query: 253 acgccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgctctggcgg 312 |||| |||| ||||||||||| ||||| |||||||||||||| |||||||| || || | Sbjct: 553 ccgccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgcgctcgccg 612 Query: 313 ccacggagatcatcacgggcgcccccttcatcaacgtgtagaata 357 ||| ||| | | || ||||| |||||| |||||||||| |||| Sbjct: 613 tcaccgagtaccttaccggcgcgcccttcgtcaacgtgtaaaata 657
>ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 265 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 324 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| |||| Sbjct: 325 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcgcggcggcgggctcctggagcag 384 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||||| ||||| |||||||||||| ||||| || ||||| ||| |||| Sbjct: 385 gccggcagcgggggcgggctcgcgtggttcgccgccaccgccgccgtgctctccgcggcg 444 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||||||| |||| || |||| | | |||| | Sbjct: 445 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 504 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 505 gccgacgctgagctctggaacggccgcttcgccatgctcggcctcgtcgc 554
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 4176055 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 4176114 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| |||| Sbjct: 4176115 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcgcggcggcgggctcctggagcag 4176174 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||||| ||||| |||||||||||| ||||| || ||||| ||| |||| Sbjct: 4176175 gccggcagcgggggcgggctcgcgtggttcgccgccaccgccgccgtgctctccgcggcg 4176234 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||||||| |||| || |||| | | |||| | Sbjct: 4176235 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 4176294 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 4176295 gccgacgctgagctctggaacggccgcttcgccatgctcggcctcgtcgc 4176344 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 4178496 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 4178555 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| || |||| ||||||||| |||| Sbjct: 4178556 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcggggcggcgggctcctggagcag 4178615 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||||| ||||| |||||||||||| ||||| | ||||| ||| |||| Sbjct: 4178616 gccggcagcggggacgggctcgcgtggttcgccgccaccgccaccgtgctctccgcggcg 4178675 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||||||| |||| || |||| | | |||| | Sbjct: 4178676 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 4178735 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 4178736 gccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgc 4178785 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cgatctgggacgcgatggcg 29 |||||||||||||||||||| Sbjct: 3291267 cgatctgggacgcgatggcg 3291286
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 59677 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 59736 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| |||| Sbjct: 59737 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcgcggcggcgggctcctggagcag 59796 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||||| ||||| |||||||||||| ||||| || ||||| ||| |||| Sbjct: 59797 gccggcagcgggggcgggctcgcgtggttcgccgccaccgccgccgtgctctccgcggcg 59856 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||||||| |||| || |||| | | |||| | Sbjct: 59857 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 59916 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 59917 gccgacgctgagctctggaacggccgcttcgccatgctcggcctcgtcgc 59966 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 62118 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 62177 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| || |||| ||||||||| |||| Sbjct: 62178 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcggggcggcgggctcctggagcag 62237 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||||| ||||| |||||||||||| ||||| | ||||| ||| |||| Sbjct: 62238 gccggcagcggggacgggctcgcgtggttcgccgccaccgccaccgtgctctccgcggcg 62297 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||||||| |||| || |||| | | |||| | Sbjct: 62298 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 62357 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 62358 gccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgc 62407
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 271 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 330 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| ||| Sbjct: 331 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 390 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||| | | ||||| ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 391 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 450 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||| ||| |||| || |||| | | |||| | Sbjct: 451 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 510 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 511 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgc 560
>ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 226 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 285 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| || |||| ||||||||| |||| Sbjct: 286 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcggggcggcgggctcctggagcag 345 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||||| ||||| |||||||||||| ||||| | ||||| ||| |||| Sbjct: 346 gccggcagcggggacgggctcgcgtggttcgccgccaccgccaccgtgctctccgcggcg 405 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||||||| |||| || |||| | | |||| | Sbjct: 406 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 465 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 466 gccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgc 515
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 25483 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 25542 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| ||| Sbjct: 25543 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 25602 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||| | | ||||| ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 25603 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 25662 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||| ||| |||| || |||| | | |||| | Sbjct: 25663 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 25722 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 25723 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgc 25772
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 58021 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 58080 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| ||| Sbjct: 58081 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 58140 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||| | | ||||| ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 58141 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 58200 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||| ||| |||| || |||| | | |||| | Sbjct: 58201 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 58260 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 58261 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgc 58310
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 8061370 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 8061429 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| ||| Sbjct: 8061430 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 8061489 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||| | | ||||| ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 8061490 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 8061549 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||| ||| |||| || |||| | | |||| | Sbjct: 8061550 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 8061609 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 8061610 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgc 8061659
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| || ||| Sbjct: 420 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 479 Query: 75 gtaggcttcgtaacggcacttgcggtggaggcaggtcgcggcgacgggctcctctcgcag 134 || || ||||| |||| || || |||||||| ||||||| ||||||||| ||| Sbjct: 480 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 539 Query: 135 ctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 194 ||||||| | | ||||| ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 540 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 599 Query: 195 tcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatgaac 254 |||||||||||||| |||| ||||||| ||| |||| || |||| | | |||| | Sbjct: 600 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 659 Query: 255 gccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgc 304 ||| |||| ||||||||||| || || |||||||||||||| |||||||| Sbjct: 660 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgc 709
>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early light-inducible protein (ELIP) (clone HV58) Length = 860 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Plus Query: 7 cctcgatctgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggc 66 ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |||| Sbjct: 429 cctcggtctgggacgcgctcgcgttcagcggcccggcgccggagcgcatcaacggccggc 488 Query: 67 tagccatggtaggcttcgt 85 | ||||||||||||||||| Sbjct: 489 tggccatggtaggcttcgt 507 Score = 71.9 bits (36), Expect = 2e-09 Identities = 126/156 (80%) Strand = Plus / Plus Query: 192 gcgtcgctggtgccgcttctccagggcgagagcgccgagggcagagccggcaccatcatg 251 ||||||||| ||||||| || |||||| |||||| ||| ||| | || || |||| | Sbjct: 617 gcgtcgctgctgccgctgctgcagggccagagcgtggagagcaaatccagcggcatctgg 676 Query: 252 aacgccaacgcggagctctggaatggccgtttcgccatgctcggactcgtcgctctggcg 311 | |||| |||| ||||||||||| ||||| ||||| |||||||| |||||||| || || Sbjct: 677 agcgccgacgccgagctctggaacggccgcttcgctatgctcggcctcgtcgcgctcgcc 736 Query: 312 gccacggagatcatcacgggcgcccccttcatcaac 347 ||||| ||| ||||||| ||||| || ||| ||||| Sbjct: 737 gccaccgagttcatcaccggcgcgccgttcgtcaac 772
>gb|AY105095.1| Zea mays PCO131564 mRNA sequence Length = 907 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Plus Query: 123 ctcctctcgcagctcggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtg 182 |||||||||||| ||||||||| |||||| || |||||||| ||| | || ||| Sbjct: 45 ctcctctcgcaggccggcagcgggtccgggctcgcctggttcgcggccacggctgccgtg 104 Query: 183 ctgtccatggcgtcgctggtgccgcttctccagggcgagagcgccgagggcagagccggc 242 |||||| |||| |||||||||||||| ||| |||||| |||||||||| ||| |||| Sbjct: 105 ctgtccgtggcctcgctggtgccgctgctcaggggcgacagcgccgaggccaggagcggc 164 Query: 243 accatcatgaacgccaacgcggagctctggaatggccgtttcgccatgctcggactcgtc 302 || |||||| ||||||||| ||||||||||| ||||| |||||||||||||| |||||| Sbjct: 165 gccgtcatgagcgccaacgccgagctctggaacggccgcttcgccatgctcggcctcgtc 224 Query: 303 gc 304 || Sbjct: 225 gc 226
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||||||||||| |||||||||||||| || ||| Sbjct: 9470816 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacgggcggctggcgatg 9470757 Query: 75 gtaggcttcgtaacggcacttgcggtggaggc 106 || || ||||| |||| || || |||||||| Sbjct: 9470756 gtggggttcgtgtcggcgctcgccgtggaggc 9470725
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||||||||||| |||||||||||||| || ||| Sbjct: 84377 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacgggcggctggcgatg 84318 Query: 75 gtaggcttcgtaacggcacttgcggtggaggc 106 || || ||||| |||| || || |||||||| Sbjct: 84317 gtggggttcgtgtcggcgctcgccgtggaggc 84286
>ref|XM_468708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 669 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||| ||||||| |||||||||||||| || ||| Sbjct: 250 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 309 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 310 gtggggttcgt 320
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||| ||||||| |||||||||||||| || ||| Sbjct: 17148521 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 17148462 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 17148461 gtggggttcgt 17148451
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||| ||||||| |||||||||||||| || ||| Sbjct: 39914 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 39855 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 39854 gtggggttcgt 39844
>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence Length = 142814 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||||||||||| |||||| ||||||| || ||| Sbjct: 137716 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacaggcggctggcgatg 137657 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 137656 gtggggttcgt 137646
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||||||||||| |||||| ||||||| || ||| Sbjct: 11129061 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacaggcggctggcgatg 11129002 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 11129001 gtggggttcgt 11128991
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||||||| ||||| ||||||| |||||||||||||| || ||| Sbjct: 17142090 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 17142031 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 17142030 gtggggttcgt 17142020
>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 818 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||| ||| ||||||||||| || |||||||||||||| || ||| Sbjct: 330 tgggacgtgctggcgttcaacgggccggcgccggaacggatcaacgggcggctggcgatg 389 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 390 gtggggttcgt 400 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 267 ctctggaatggccgtttcgccatgctcggactcgtcgc 304 |||||||| ||||| |||||||||||||| |||||||| Sbjct: 581 ctctggaacggccgcttcgccatgctcgggctcgtcgc 618
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 54.0 bits (27), Expect = 5e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 15 tgggacgcgatggcgttcagcggcccggcgccggagcgcatcaacgggcggctagccatg 74 ||||||| | ||||||||| ||| ||||||||||| || |||||||||||||| || ||| Sbjct: 395 tgggacgtgctggcgttca-cgggccggcgccggaacggatcaacgggcggctggcgatg 453 Query: 75 gtaggcttcgt 85 || || ||||| Sbjct: 454 gtggggttcgt 464 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 267 ctctggaatggccgtttcgccatgctcggactcgtcgc 304 |||||||| ||||| |||||||||||||| |||||||| Sbjct: 646 ctctggaacggccgcttcgccatgctcgggctcgtcgc 683
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 178 cggtgctgtccatggcgtcgctggtgc 204 |||||||||| |||||||||||||||| Sbjct: 926683 cggtgctgtcgatggcgtcgctggtgc 926709
>ref|NM_210365.1| Eremothecium gossypii AER153Wp (AER153W), mRNA Length = 2247 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 178 cggtgctgtccatggcgtcgctggtgc 204 |||||||||| |||||||||||||||| Sbjct: 734 cggtgctgtcgatggcgtcgctggtgc 760
>ref|XM_482221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgtccatggcgtcgctgg 201 ||||||||||||||||||||| Sbjct: 570 tgctgtccatggcgtcgctgg 590
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgtccatggcgtcgctgg 201 ||||||||||||||||||||| Sbjct: 18770267 tgctgtccatggcgtcgctgg 18770287
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgtccatggcgtcgctgg 201 ||||||||||||||||||||| Sbjct: 73716 tgctgtccatggcgtcgctgg 73736
>dbj|AK069665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027H24, full insert sequence Length = 1802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgctgtccatggcgtcgctgg 201 ||||||||||||||||||||| Sbjct: 570 tgctgtccatggcgtcgctgg 590
>dbj|D85513.1| Oryza sativa (japonica cultivar-group) ELIP mRNA, partial sequence Length = 296 Score = 42.1 bits (21), Expect = 1.7 Identities = 48/57 (84%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 249 atgaacgccaacgcggagctctggaa-tggccgtttcgccatgctcggactcgtcgc 304 |||| |||| || | ||||||||||| || || |||||||||||||| |||||||| Sbjct: 37 atgancgccgacnccgagctctggaacnggncggttcgccatgctcggcctcgtcgc 93
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 cggcagcggcaccgggcagg 156 |||||||||||||||||||| Sbjct: 2102235 cggcagcggcaccgggcagg 2102216
>ref|XM_476698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1902 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cgatctgggacgcgatggcg 29 |||||||||||||||||||| Sbjct: 780 cgatctgggacgcgatggcg 799
>ref|XM_506171.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.127 mRNA Length = 1913 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cgatctgggacgcgatggcg 29 |||||||||||||||||||| Sbjct: 792 cgatctgggacgcgatggcg 811
>gb|DQ491003.1| Chlorella virus AR158 ctg_1047243734156 genomic sequence Length = 344691 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 atgtaaatgatgataactgatcat 441 |||||||||||||||||| ||||| Sbjct: 140786 atgtaaatgatgataacttatcat 140809
>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5, complete sequence Length = 122916 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 aaatgatgataactgatcat 441 |||||||||||||||||||| Sbjct: 66795 aaatgatgataactgatcat 66776
>emb|BX640473.9| Zebrafish DNA sequence from clone CH211-201F12 in linkage group 5, complete sequence Length = 193735 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 aaatgatgataactgatcat 441 |||||||||||||||||||| Sbjct: 115170 aaatgatgataactgatcat 115151
>gb|AC021236.10| Homo sapiens chromosome 8, clone RP11-113H14, complete sequence Length = 162259 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 tagtattgctaattaaaacg 482 |||||||||||||||||||| Sbjct: 85245 tagtattgctaattaaaacg 85226
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tcggcagcggcaccgggcag 155 |||||||||||||||||||| Sbjct: 31903 tcggcagcggcaccgggcag 31884
>ref|XM_395754.2| PREDICTED: Apis mellifera similar to site-1 protease (LOC412293), mRNA Length = 3637 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 taactgatcatcctcttatt 450 |||||||||||||||||||| Sbjct: 731 taactgatcatcctcttatt 750
>emb|Z18809.1|OSELIMR O.sensibilis mRNA for early light inducible protein (partial) Length = 774 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 255 gccaacgcggagctctggaatggccgtttcgccatg 290 ||||| ||||||| |||||||||||| |||||||| Sbjct: 615 gccaaggcggagcgctggaatggccgcctcgccatg 650
>dbj|AK098844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B24, full insert sequence Length = 1902 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cgatctgggacgcgatggcg 29 |||||||||||||||||||| Sbjct: 780 cgatctgggacgcgatggcg 799
>dbj|AK065047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I08, full insert sequence Length = 1915 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cgatctgggacgcgatggcg 29 |||||||||||||||||||| Sbjct: 792 cgatctgggacgcgatggcg 811
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 cgatctgggacgcgatggcg 29 |||||||||||||||||||| Sbjct: 100960 cgatctgggacgcgatggcg 100979 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,787,433 Number of Sequences: 3902068 Number of extensions: 2787433 Number of successful extensions: 69740 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69353 Number of HSP's gapped (non-prelim): 375 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
