>CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21|
          Length = 284

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = +3

Query: 78  EHRQKLRQIEIAVMQYRDSLEEKGLHNMEEIERKVASHRRRL 203
           EH +K R++E+A M+ +D LEE+G    EEIE +V + RR+L
Sbjct: 71  EHERK-RKVEVACMELQDKLEEEGQKGEEEIEEEVNTLRRQL 111

>CWC21_CRYNE (Q5KDV1) Pre-mRNA-splicing factor CWC21|
          Length = 205

 Score = 36.2 bits (82), Expect = 0.064
 Identities = 18/42 (42%), Positives = 30/42 (71%)
 Frame = +3

Query: 78  EHRQKLRQIEIAVMQYRDSLEEKGLHNMEEIERKVASHRRRL 203
           EH +K R++E+ VM+ RD LEEKG+   ++IE + +  R++L
Sbjct: 64  EHERK-RRVEVKVMELRDELEEKGMEE-DDIEEECSKLRQKL 103

>CWC21_ASHGO (Q751G9) Pre-mRNA-splicing factor CWC21|
          Length = 125

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 18/39 (46%), Positives = 27/39 (69%)
 Frame = +3

Query: 96  RQIEIAVMQYRDSLEEKGLHNMEEIERKVASHRRRLQSD 212
           R+IE+ V + RD LE+  + + EEIER+    RR+LQS+
Sbjct: 66  REIEVRVSELRDELEDADI-DAEEIERRCEQLRRQLQSE 103

>CWC21_YEAST (Q03375) Pre-mRNA-splicing factor CWC21 (Complexed with CEF1|
           protein 21)
          Length = 135

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +3

Query: 75  EEHRQKLRQIEIAVMQYRDSLEEKGLHNMEEIERKVASHRRRLQSD 212
           E H +K R+IE+ V + RD LEE+   + E+I++K  + R +L ++
Sbjct: 65  ETHMEK-REIEVQVSELRDRLEEEETLSEEQIDKKCEALRAKLTNE 109

>CYSP1_DICDI (P04988) Cysteine proteinase 1 precursor (EC 3.4.22.-)|
          Length = 343

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -3

Query: 363 MTSLKDYGSCFGCEAVSWKNHVHHPPFLSAPMIVS---QKTVCCLHRLLKTNHDQI--EG 199
           +T +K+ G C  C + S   +V    F+S   +VS   Q  V C H  ++   ++   EG
Sbjct: 130 VTPVKNQGQCGSCWSFSTTGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEEACDEG 189

Query: 198 AYGGWQPSS 172
             GG QP++
Sbjct: 190 CNGGLQPNA 198

>APOD_CAVPO (P51909) Apolipoprotein D precursor (Apo-D) (ApoD)|
          Length = 189

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 360 TSLKDYGSCFGCEAVSWKNHVHHPPFLSAPMIVSQKTVCCLHRLLKTNHDQIE 202
           T   +Y   + C  + W  HV H   L     + Q+TV  L  +L +N+  IE
Sbjct: 123 TDYDNYALVYSCTNIIWLFHVDHIWILGRNRYLPQETVTYLKDILTSNNIDIE 175

>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)|
          Length = 3336

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 36   TDQAIHHPDTIVNEEHRQKLRQIEIAVMQYRDSLE---EKGLHNMEEIERKVASHRRRLQ 206
            T +A  H DT  +    QKL++ +  V+  +  LE   ++ LH+ +++E +   H   L+
Sbjct: 2775 TQEACVHQDTQAHHALLQKLKEEKSRVVDLQAMLEKVQQQALHSQQQLEAEAQKHCEALR 2834

Query: 207  SDHGLSS 227
             +  +S+
Sbjct: 2835 REKEVSA 2841

>POL_IPMA (P11368) Putative Pol polyprotein [Contains: Integrase (IN);|
           Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
           3.1.26.4) (RT)]
          Length = 867

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 324 EAVSWKNHVHHPPFLSAPMIVSQKTVCCLHRLLKTNH 214
           E V WKN +H+  +   P+++  +   C+   +KT H
Sbjct: 807 EMVKWKNVLHNKWYGPDPILIRSRGAVCVFHRMKTTH 843

>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 368

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = +1

Query: 250 GLLRDYHWSGKKGRMMHVILPGNGLAAEAGAVVLQGSHHWIEIESTVAAEADCMAMTPGE 429
           GL  D+    K       +L  +  A  A  ++L+G    ++ E T+   A+C+ + P  
Sbjct: 128 GLYEDWRQDEKVAAQ---VLDYHQAAGYAAPLILEGGSIHVDGEGTLLTTAECL-LNPNR 183

Query: 430 TGHVKKAQAEGRM-----ITTIGAAETGKRTGERGR*LKPCCALI 549
             H+ KA+ E  M     I+TI   E G    E    +   C  +
Sbjct: 184 NPHLSKAEIEQLMRDYLSISTIIWLEEGVYNDETDGHIDNMCCFV 228

>AGUA_SELRU (Q5KR05) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine|
           iminohydrolase)
          Length = 371

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/80 (30%), Positives = 36/80 (45%)
 Frame = +1

Query: 247 DGLLRDYHWSGKKGRMMHVILPGNGLAAEAGAVVLQGSHHWIEIESTVAAEADCMAMTPG 426
           DGL  DY         M   L G+ L  +AG  VL+G    ++ E TV     C+ ++ G
Sbjct: 126 DGLYPDYGQDDAAAEKMCAAL-GDELY-DAGDFVLEGGSIHVDGEGTVVVTEACL-LSQG 182

Query: 427 ETGHVKKAQAEGRMITTIGA 486
               + K Q E  ++  +GA
Sbjct: 183 RNPDLSKEQIEAMLLKYLGA 202

>ATPB_BACP3 (P07677) ATP synthase beta chain (EC 3.6.3.14)|
          Length = 473

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +3

Query: 30  ISTDQAIHHPDTIVNEEHRQKLRQIEIAVMQYRDSLEEKGLHNMEEI--ERKVASHR-RR 200
           +ST +A+     IV EEH Q  R+++  + +Y++  +   +  M+E+  E K+  HR RR
Sbjct: 348 VSTSRAL--APEIVGEEHYQVARKVQQTLERYKELQDIIAILGMDELSDEDKLVVHRARR 405

Query: 201 LQ 206
           +Q
Sbjct: 406 IQ 407

>US15_HCMVA (P09718) Hypothetical protein HVLF3|
          Length = 262

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -3

Query: 480 YRGDHPS-LGLSFF----HVPCLSRRHCHAICLCCDCTLYLYPVMTSLKDYGSCFG 328
           Y   HPS +G+  F    HVP L       ICLC D TL +   + +L  + SC G
Sbjct: 100 YETSHPSNIGVLLFYTLLHVPPLI-----VICLCLDGTLVISAALFTLLAFLSCTG 150

>ATPB_GEOTH (Q9LA80) ATP synthase beta chain (EC 3.6.3.14)|
          Length = 473

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +3

Query: 66  IVNEEHRQKLRQIEIAVMQYRDSLEEKGLHNMEEI--ERKVASHR-RRLQ 206
           IV EEH Q  R+++  + +Y++  +   +  M+E+  E K+  HR RR+Q
Sbjct: 358 IVGEEHYQVARKVQQTLQRYKELQDIIAILGMDELSDEDKLVVHRARRIQ 407

>ATPB_BACST (P42006) ATP synthase beta chain (EC 3.6.3.14)|
          Length = 473

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +3

Query: 66  IVNEEHRQKLRQIEIAVMQYRDSLEEKGLHNMEEI--ERKVASHR-RRLQ 206
           IV EEH Q  R+++  + +Y++  +   +  M+E+  E K+  HR RR+Q
Sbjct: 358 IVGEEHYQVARKVQQTLQRYKELQDIIAILGMDELSDEDKLVVHRARRIQ 407

>ATPB_BACCA (P41009) ATP synthase beta chain (EC 3.6.3.14)|
          Length = 473

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +3

Query: 66  IVNEEHRQKLRQIEIAVMQYRDSLEEKGLHNMEEI--ERKVASHR-RRLQ 206
           IV EEH Q  R+++  + +Y++  +   +  M+E+  E K+  HR RR+Q
Sbjct: 358 IVGEEHYQVARKVQQTLQRYKELQDIIAILGMDELSDEDKLVVHRARRIQ 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,169,996
Number of Sequences: 219361
Number of extensions: 1168802
Number of successful extensions: 4482
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4481
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)