ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4p05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97917.1|HVBLT142 H.vulgare blt14.2 gene 557 e-155
2emb|Z23258.1|SCACCPROA S.cereale acclimation protein mRNA, compl... 101 2e-18
3gb|L28093.1|WHTCOREG Triticum aestivum pTACR7 (tacr7) mRNA, part... 80 6e-12
4gb|AF069331.2|AF069331 Hordeum vulgare clone BLTI-5 low temperat... 80 6e-12
5emb|AJ132439.1|TAE132439 Triticum aestivum mRNA for protein enco... 74 4e-10
6emb|X57554.1|HVBLT14 H. vulgare BLT14 mRNA 74 4e-10
7gb|L28091.1|BLYTRA Hordeum vulgare transmembrane protein mRNA fr... 74 4e-10
8emb|X97916.1|HVBLT141 H.vulgare blt14.1 gene 66 9e-08
9gb|L28092.1|BLYTRAA Hordeum vulgare transmembrane protein mRNA f... 66 9e-08
10gb|M60733.1|BLYCLDAB Hordeum vulgare cold-regulated mRNA, partia... 64 4e-07
11emb|Z23257.1|SCRLT141A S.cereale RLT1412 mRNA, complete CDS 50 0.006
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.34
13gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genom... 44 0.34
14gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.34
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
16dbj|AP006127.1| Lotus japonicus genomic DNA, chromosome 5, clone... 44 0.34
17dbj|AP004940.1| Lotus japonicus genomic DNA, chromosome 3, clone... 44 0.34
18gb|AC164524.5| Mus musculus BAC RP23-438F8 (Roswell Park Cancer... 42 1.4
19gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Canc... 42 1.4
20gb|AF271260.1|AF271260 Triticum aestivum cold-responsive protein... 42 1.4
21gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, compl... 42 1.4
22gb|BT017382.1| Zea mays clone EL01N0326E08.c mRNA sequence 40 5.4
23gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
24gb|AC164419.3| Mus musculus chromosome 5, clone RP23-309G12, com... 40 5.4
25gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
26gb|AC102446.8| Mus musculus chromosome 5, clone RP24-201G17, com... 40 5.4
27gb|AY568280.1| Halanaerobium congolense putative rhodanese-like ... 40 5.4
28gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, compl... 40 5.4
29gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genom... 40 5.4
30gb|AC139356.17| Medicago truncatula clone mth2-12c11, complete s... 40 5.4
31emb|AL360157.12| Human DNA sequence from clone RP11-801I18 on ch... 40 5.4
32emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
33emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
34gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.4
35emb|BX001031.19| Zebrafish DNA sequence from clone CH211-242A9, ... 40 5.4
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
41gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genom... 40 5.4
42dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
43dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
44dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
45dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
46ref|XM_312274.2| Anopheles gambiae str. PEST ENSANGP00000002826 ... 40 5.4
47gb|U85056.1|HSU85056 Homo sapiens FSHD-associated repeat DNA, pr... 40 5.4
48emb|BX897671.5| Zebrafish DNA sequence from clone CH211-214K5 in... 40 5.4
49emb|BX005054.7| Zebrafish DNA sequence from clone DKEY-209N16 in... 40 5.4
50dbj|AP006657.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.4
51dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.4 
>emb|X97917.1|HVBLT142 H.vulgare blt14.2 gene
          Length = 687

 Score =  557 bits (281), Expect = e-155
 Identities = 295/300 (98%)
 Strand = Plus / Plus

                                                                       
Query: 12  gtggtgccggcgccggnagtggcgtcgccgagtccaaggcttcttcgggttcggggttgc 71
           ||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 328 gtggtgccggcgccggaggtggcgtccccgagtccaagtcttcttcgggttcggggttgc 387

                                                                       
Query: 72  cggacttgccggtggtgggaaccggtaccggtaccagtaccattaacggcccgctggtgg 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cggacttgccggtggtgggaaccggtaccggtaccagtaccattaacggcccgctggtgg 447

                                                                       
Query: 132 tgattcctggggtccctactcatgcatgatcatcttgtgtgcatgtgctgacttgcatac 191
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgattcctggggcccctactcatgcatgatcatcttgtgtgcatgtgctgacttgcatac 507

                                                                       
Query: 192 atacatacaagctgaagctgaacttgtgggttttactagatttctatagccggcatcgcc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atacatacaagctgaagctgaacttgtgggttttactagatttctatagccggcatcgcc 567

                                                                       
Query: 252 cggaagaaaaacacctgcgtttcgctcatgtccacgttcctcaatgagcgtttgtatccg 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cggaagaaaaacacctgcgtttcgctcatgtccacgttcctcaatgagcgtttgtatccg 627



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 321 gaagtttatatatactggttccttggtttgctacatgtaacatc 364
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaagtttatatatactggttccttggtttgctacatgtaacatc 685
to top
>emb|Z23258.1|SCACCPROA S.cereale acclimation protein mRNA, complete CDS
          Length = 479

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Plus

                                                                       
Query: 68  ttgccggacttgccggtggtgggaaccggtaccggtaccagtaccattaacggcccgctg 127
           ||||| ||||||||||| ||||| |||  |||||| ||||||||||||||||||||||||
Sbjct: 123 ttgccagacttgccggtcgtgggcaccactaccggaaccagtaccattaacggcccgctg 182

                          
Query: 128 gtggtgattcctggg 142
           |||||||||||||||
Sbjct: 183 gtggtgattcctggg 197



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 80/96 (83%), Gaps = 6/96 (6%)
 Strand = Plus / Plus

                                                                       
Query: 195 catacaagctgaagctgaacttgtgggttttactagatttctatagccggcatcgcccgg 254
           ||||||||||||||| |||||||||| |||    ||| |||| || |  ||| |||||||
Sbjct: 246 catacaagctgaagcagaacttgtggcttt----agacttctgtaactagcaccgcccgg 301

                                               
Query: 255 aagaaaaacac--ctgcgtttcgctcatgtccacgt 288
           ||| |||||||  | |||||||||||||||||||||
Sbjct: 302 aaggaaaacacaccggcgtttcgctcatgtccacgt 337
to top
>gb|L28093.1|WHTCOREG Triticum aestivum pTACR7 (tacr7) mRNA, partial cds
          Length = 292

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 89  ggaaccggtaccggtaccagtaccattaacggcccgctggtggtgattcctggggtccct 148
           ||||||| |||||||||||| ||||||| |||||||||||||||| |||||||| |||||
Sbjct: 218 ggaaccgttaccggtaccagcaccattaccggcccgctggtggtgcttcctgggatccct 277
to top
>gb|AF069331.2|AF069331 Hordeum vulgare clone BLTI-5 low temperature induced protein mRNA,
           complete cds
          Length = 546

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                       
Query: 86  gtgggaaccggtaccggtaccagtaccattaacggcccgctggtggtgattcctggggtc 145
           |||||||| | |||||||||||| |||| |||||||||| |||||||| |||||||| ||
Sbjct: 257 gtgggaacagttaccggtaccagcaccactaacggcccgttggtggtgcttcctgggatc 316

                               
Query: 146 cctactcatgcatgatcatc 165
           ||| ||||  ||||||||||
Sbjct: 317 cctgctcacccatgatcatc 336
to top
>emb|AJ132439.1|TAE132439 Triticum aestivum mRNA for protein encoded by lt1.1 gene, partial
          Length = 416

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 88  gggaaccggtaccggtaccagtaccattaacggcccgctggtggtgattcctggggtccc 147
           |||||||||||| || ||||| ||||||| |||||||||||||||| |||||||| ||||
Sbjct: 104 gggaaccggtacgggaaccagcaccattaccggcccgctggtggtgcttcctgggatccc 163

            
Query: 148 t 148
           |
Sbjct: 164 t 164
to top
>emb|X57554.1|HVBLT14 H. vulgare BLT14 mRNA
          Length = 514

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 88  gggaaccggtaccggtaccagtaccattaacggcccgctggtggtgattcctggggtccc 147
           ||||||||||||||| || || ||||||| |||||||||||||||||| |||||| ||||
Sbjct: 193 gggaaccggtaccggaacaagcaccattaccggcccgctggtggtgatccctgggatccc 252

            
Query: 148 t 148
           |
Sbjct: 253 t 253
to top
>gb|L28091.1|BLYTRA Hordeum vulgare transmembrane protein mRNA fragment
          Length = 541

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 88  gggaaccggtaccggtaccagtaccattaacggcccgctggtggtgattcctggggtccc 147
           ||||||||||||||| || || ||||||| |||||||||||||||||| |||||| ||||
Sbjct: 222 gggaaccggtaccggaacaagcaccattaccggcccgctggtggtgatccctgggatccc 281

            
Query: 148 t 148
           |
Sbjct: 282 t 282
to top
>emb|X97916.1|HVBLT141 H.vulgare blt14.1 gene
          Length = 963

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 64  ggggttgccggacttgccggtggtgggaaccggtaccggtaccagtaccattaacggccc 123
           ||||||||| || |||||| | |||||||||| |||||||||||| ||| ||| ||| ||
Sbjct: 570 ggggttgccagagttgccgcttgtgggaaccgttaccggtaccagcaccgttaccggtcc 629

                            
Query: 124 gctggtggtgattcctg 140
           | |||||||| ||||||
Sbjct: 630 ggtggtggtgcttcctg 646
to top
>gb|L28092.1|BLYTRAA Hordeum vulgare transmembrane protein mRNA fragment
          Length = 642

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                       
Query: 64  ggggttgccggacttgccggtggtgggaaccggtaccggtaccagtaccattaacggccc 123
           ||||||||| || |||||| | |||||||||| |||||||||||| ||| ||| ||| ||
Sbjct: 261 ggggttgccagagttgccgcttgtgggaaccgttaccggtaccagcaccgttaccggtcc 320

                            
Query: 124 gctggtggtgattcctg 140
           | |||||||| ||||||
Sbjct: 321 ggtggtggtgcttcctg 337
to top
>gb|M60733.1|BLYCLDAB Hordeum vulgare cold-regulated mRNA, partial cds
          Length = 770

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 87  tgggaaccggtaccggtaccagtaccattaacggcccgctggtggtgattcctggggtcc 146
           ||||||||  ||| |||||||||||||||| ||||||| |||||||| |||| | |||||
Sbjct: 500 tgggaaccattacgggtaccagtaccattaccggcccggtggtggtgcttccggcggtcc 559

                               
Query: 147 ctactcatgcatgatcatct 166
           || ||||  |||||| ||||
Sbjct: 560 ctgctcacccatgattatct 579
to top
>emb|Z23257.1|SCRLT141A S.cereale RLT1412 mRNA, complete CDS
          Length = 525

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 253 ggaagaaaaacacctgcgtttcgctcatgtccacgttcctcaatgagcgtttgtatc 309
           |||||| ||||||| |||||||||||||   || |||||| ||||||||| ||||||
Sbjct: 368 ggaagataaacaccggcgtttcgctcattagcatgttccttaatgagcgtctgtatc 424



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 197 tacaagctgaagctgaacttgtgg 220
           |||||| |||||||||||||||||
Sbjct: 313 tacaagatgaagctgaacttgtgg 336
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 369      taatacatactccctccgttcc 390
                ||||||||||||||||||||||
Sbjct: 30865105 taatacatactccctccgttcc 30865126



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 371      atacatactccctccgttcc 390
                ||||||||||||||||||||
Sbjct: 29567632 atacatactccctccgttcc 29567613



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 369      taatacatactccctccgtt 388
                ||||||||||||||||||||
Sbjct: 20625387 taatacatactccctccgtt 20625368
to top
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete
             sequence
          Length = 122496

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 369   taatacatactccctccgttcc 390
             ||||||||||||||||||||||
Sbjct: 77985 taatacatactccctccgttcc 77964
to top
>gb|AY013245.2| Oryza sativa (japonica cultivar-group) chromosome 3 BAC 36I5, partial
             sequence
          Length = 65547

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 369   taatacatactccctccgttcc 390
             ||||||||||||||||||||||
Sbjct: 43094 taatacatactccctccgttcc 43115
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 369      taatacatactccctccgttcc 390
                ||||||||||||||||||||||
Sbjct: 30955628 taatacatactccctccgttcc 30955649



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 371      atacatactccctccgttcc 390
                ||||||||||||||||||||
Sbjct: 29659054 atacatactccctccgttcc 29659035



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 369      taatacatactccctccgtt 388
                ||||||||||||||||||||
Sbjct: 20618416 taatacatactccctccgtt 20618397
to top
>dbj|AP006127.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48O21, TM0211,
             complete sequence
          Length = 137303

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 369   taatacatactccctccgttcc 390
             ||||||||||||||||||||||
Sbjct: 23132 taatacatactccctccgttcc 23111
to top
>dbj|AP004940.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT48I11, TM0106,
             complete sequence
          Length = 103636

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 370   aatacatactccctccgttcct 391
             ||||||||||||||||||||||
Sbjct: 23581 aatacatactccctccgttcct 23602
to top
>gb|AC164524.5| Mus musculus  BAC RP23-438F8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180937

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    catacatacatacaagctgaa 207
              |||||||||||||||||||||
Sbjct: 145322 catacatacatacaagctgaa 145342
to top
>gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 159299

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    catacatacatacaagctgaa 207
              |||||||||||||||||||||
Sbjct: 141662 catacatacatacaagctgaa 141642
to top
>gb|AF271260.1|AF271260 Triticum aestivum cold-responsive protein (Wlt10) mRNA, complete
           cds
          Length = 548

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 84  tggtgggaaccggtaccggtaccagtaccattaacggcccg 124
           |||||||| ||  ||||||||||||||| |||| |||||||
Sbjct: 278 tggtgggagccattaccggtaccagtacaattaccggcccg 318



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 257 gaaaaacacctgcgtttcgctcatgtccacgttcct 292
           |||||||| | ||||| |||||||||||| ||||||
Sbjct: 387 gaaaaacatcggcgttgcgctcatgtccatgttcct 422
to top
>gb|AC154237.1| Mus musculus BAC clone RP24-162O18 from 17, complete sequence
          Length = 168481

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    catacatacatacaagctgaa 207
              |||||||||||||||||||||
Sbjct: 110691 catacatacatacaagctgaa 110671
to top
>gb|BT017382.1| Zea mays clone EL01N0326E08.c mRNA sequence
          Length = 1049

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 372 tacatactccctccgttcct 391
           ||||||||||||||||||||
Sbjct: 777 tacatactccctccgttcct 758
to top
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0059G01, complete sequence
          Length = 141661

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   tacatactccctccgttcct 391
             ||||||||||||||||||||
Sbjct: 41320 tacatactccctccgttcct 41339
to top
>gb|AC164419.3| Mus musculus chromosome 5, clone RP23-309G12, complete sequence
          Length = 159565

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   gacttgcatacatacataca 200
             ||||||||||||||||||||
Sbjct: 94316 gacttgcatacatacataca 94335
to top
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16,
              complete sequence
          Length = 159525

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    tacatactccctccgttcct 391
              ||||||||||||||||||||
Sbjct: 148092 tacatactccctccgttcct 148111
to top
>gb|AC102446.8| Mus musculus chromosome 5, clone RP24-201G17, complete sequence
          Length = 176748

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    gacttgcatacatacataca 200
              ||||||||||||||||||||
Sbjct: 149379 gacttgcatacatacataca 149398
to top
>gb|AY568280.1| Halanaerobium congolense putative rhodanese-like protein gene,
           complete cds
          Length = 921

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 tagatttctatagccggcat 247
           ||||||||||||||||||||
Sbjct: 816 tagatttctatagccggcat 797
to top
>gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, complete sequence
          Length = 159624

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ggtaccggtaccagtaccat 114
              ||||||||||||||||||||
Sbjct: 141691 ggtaccggtaccagtaccat 141710
to top
>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   taatacatactccctccgtt 388
             ||||||||||||||||||||
Sbjct: 39144 taatacatactccctccgtt 39125
to top
>gb|AC139356.17| Medicago truncatula clone mth2-12c11, complete sequence
          Length = 120921

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   atacatactccctccgttcc 390
             ||||||||||||||||||||
Sbjct: 93256 atacatactccctccgttcc 93237
to top
>emb|AL360157.12| Human DNA sequence from clone RP11-801I18 on chromosome 6q14.2-16.1
             Contains part of a novel gene, complete sequence
          Length = 197431

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggtaccggtaccagtaccat 114
             ||||||||||||||||||||
Sbjct: 72275 ggtaccggtaccagtaccat 72256
to top
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   atacatactccctccgttcc 390
             ||||||||||||||||||||
Sbjct: 34853 atacatactccctccgttcc 34872
to top
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
              complete sequence
          Length = 179644

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    atacatactccctccgttcc 390
              ||||||||||||||||||||
Sbjct: 131923 atacatactccctccgttcc 131942
to top
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 84      tggtgggaaccggtaccggt 103
               ||||||||||||||||||||
Sbjct: 5903005 tggtgggaaccggtaccggt 5903024
to top
>emb|BX001031.19| Zebrafish DNA sequence from clone CH211-242A9, complete sequence
          Length = 192207

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   catacaagctgaagctgaac 214
             ||||||||||||||||||||
Sbjct: 44988 catacaagctgaagctgaac 44969
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 371      atacatactccctccgttcc 390
                ||||||||||||||||||||
Sbjct: 29995171 atacatactccctccgttcc 29995190
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 368     gtaatacatactccctccgt 387
               ||||||||||||||||||||
Sbjct: 5361036 gtaatacatactccctccgt 5361017
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     tacatactccctccgttcct 391
               ||||||||||||||||||||
Sbjct: 3054076 tacatactccctccgttcct 3054095
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 369      taatacatactccctccgtt 388
                ||||||||||||||||||||
Sbjct: 19825511 taatacatactccctccgtt 19825530
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 369     taatacatactccctccgtt 388
               ||||||||||||||||||||
Sbjct: 7338490 taatacatactccctccgtt 7338471
to top
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete
             sequence
          Length = 132782

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   atacatactccctccgttcc 390
             ||||||||||||||||||||
Sbjct: 90262 atacatactccctccgttcc 90243
to top
>dbj|AP001550.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0431F01
          Length = 143209

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    taatacatactccctccgtt 388
              ||||||||||||||||||||
Sbjct: 139920 taatacatactccctccgtt 139901
to top
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056O06
          Length = 151038

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   gtaatacatactccctccgt 387
             ||||||||||||||||||||
Sbjct: 30847 gtaatacatactccctccgt 30828
to top
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0508B05
          Length = 166165

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  taatacatactccctccgtt 388
            ||||||||||||||||||||
Sbjct: 3112 taatacatactccctccgtt 3131
to top
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G07
          Length = 149119

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    taatacatactccctccgtt 388
              ||||||||||||||||||||
Sbjct: 134062 taatacatactccctccgtt 134081
to top
>ref|XM_312274.2| Anopheles gambiae str. PEST ENSANGP00000002826 (ENSANGG00000002327),
             partial mRNA
          Length = 14280

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     gcacgagggtggtgccggcgccgg 27
             |||||||||||||||||| |||||
Sbjct: 10203 gcacgagggtggtgccggtgccgg 10226
to top
>gb|U85056.1|HSU85056 Homo sapiens FSHD-associated repeat DNA, proximal region
          Length = 27574

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   atacatacatacaagctgaa 207
             ||||||||||||||||||||
Sbjct: 17533 atacatacatacaagctgaa 17552
to top
>emb|BX897671.5| Zebrafish DNA sequence from clone CH211-214K5 in linkage group 4,
              complete sequence
          Length = 201108

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    tacatacaagctgaagctga 212
              ||||||||||||||||||||
Sbjct: 161696 tacatacaagctgaagctga 161677
to top
>emb|BX005054.7| Zebrafish DNA sequence from clone DKEY-209N16 in linkage group 6,
              complete sequence
          Length = 230686

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    catacaagctgaagctgaac 214
              ||||||||||||||||||||
Sbjct: 190094 catacaagctgaagctgaac 190075
to top
>dbj|AP006657.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT05H03, TM0342b,
             complete sequence
          Length = 58173

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   tacatactccctccgttcct 391
             ||||||||||||||||||||
Sbjct: 18781 tacatactccctccgttcct 18800
to top
>dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09I17, TM0026,
             complete sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   tacatactccctccgttcct 391
             ||||||||||||||||||||
Sbjct: 69241 tacatactccctccgttcct 69222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,490,709
Number of Sequences: 3902068
Number of extensions: 3490709
Number of successful extensions: 277408
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 275958
Number of HSP's gapped (non-prelim): 1450
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top