>IN37_SPIOL (P23525) 37 kDa inner envelope membrane protein, chloroplast|
           precursor (E37)
          Length = 344

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 24/43 (55%), Positives = 33/43 (76%)
 Frame = +1

Query: 16  QAHVNPVFVFFRFLIGTICATYFFLVPIYMWIKDKIVPQGRPI 144
           Q  V+P+   +RFL+G + +TY+ LVPIYMWIKDKI P+G P+
Sbjct: 302 QKPVHPLVFLYRFLLGALASTYYVLVPIYMWIKDKIFPKGMPL 344

>FLIK_BUCBP (Q89AZ5) Flagellar hook-length control protein|
          Length = 356

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 321 VFQDMGN*LIRLTSCLYISLRVVWIPEKVEHFHL*INKGAVLFVVTDSEYINREFQSHLL 500
           VF+ M   L   T C+   L    +     +F +  NK  +L +VT    I + FQSH++
Sbjct: 220 VFKKMLVFLNNKTKCITFILNSKHLGSVFIYFKIINNKSIILDLVTCRNEIKKIFQSHII 279

Query: 501 YIK 509
           Y+K
Sbjct: 280 YLK 282

>IE61_VZVD (P09309) Transcriptional repressor IE61 (Immediate-early protein|
           61) (IE61)
          Length = 467

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 194 RSKPCKHPFCSMLCCVCIYMWTRATVRRPIC 286
           ++ PC H FC     VCI  WT  +V+ P+C
Sbjct: 31  KTMPCLHDFCF----VCIRAWTSTSVQCPLC 57

>GUN4_THEFU (P26221) Endoglucanase E-4 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase E-4) (Cellulase E-4) (Cellulase
           E4)
          Length = 880

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 490 D*NSLFIYSLSVTTNKTAPLFIYRWKCSTFSGIQTTR--REIYKQEVSLINQFPMSWNTC 317
           D +S F  S+ +T + TAPL  +    +  +G Q T      ++Q+ + +   PMSWN+ 
Sbjct: 786 DWDSGFTASIRITYHGTAPLSSWELSFTFPAGQQVTHGWNATWRQDGAAVTATPMSWNSS 845

Query: 316 L 314
           L
Sbjct: 846 L 846

>MURE_SYNEL (Q8DJI4) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 497

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +3

Query: 183 ESISDLSHANTPFVPCCVVYVYICGRARLSEDRSAIGSVHQRIQRQV 323
           +S+ +L  A  PF+P  ++ V+ CG  R    R  +G++  R+  QV
Sbjct: 358 DSLENLLRAARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQV 404

>PHZF_PSECL (Q51520) Phenazine biosynthesis protein phzF|
          Length = 278

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/84 (26%), Positives = 31/84 (36%)
 Frame = -3

Query: 342 SFPCPGTPASVSVDERSQ*QIGLLTVARVHIYIHTQHNMEQKGCLHGLDRILTPILSPPV 163
           S P  G P +V  D        +  +AR      T   ++ + C   L RI TP+   P 
Sbjct: 12  SAPLEGNPVTVFFDADDLSATQMQRIAREMNLSETTFVLKPRNCGDALIRIFTPVNELPF 71

Query: 162 REHH*LDGPALGHNLVFDPHVNRH 91
             H     P LG  +    H + H
Sbjct: 72  AGH-----PLLGTAIALGAHTDNH 90

>CYB_LIAAL (O48090) Cytochrome b|
          Length = 371

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 25  VNPVFVFFRFLIGTICATYFFLVPIYMWIKDKIV 126
           V P F+    +  T+  T+F L+PI  W ++K++
Sbjct: 335 VEPPFIVISQVTSTLYFTFFLLIPILGWTENKMM 368

>SOX6_HUMAN (P35712) Transcription factor SOX-6|
          Length = 828

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 389 DNSKRDI*AGSKSDQSVSHVLEHLPLYPLMN 297
           D   +D+ +  K + S  HV  HLPL+P+M+
Sbjct: 18  DAMTQDLTSREKEEGSDQHVASHLPLHPIMH 48

>NU1M_DROYA (P07710) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  VFVFFRFLIGTICATYFFLVPIYMW 108
           + + F FLIG+    YFF   IYMW
Sbjct: 153 IMLSFIFLIGSYNMIYFFYYQIYMW 177

>NU1M_DROME (P18929) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 312

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  VFVFFRFLIGTICATYFFLVPIYMW 108
           + + F FLIG+    YFF   +YMW
Sbjct: 153 ILLSFIFLIGSYNMIYFFFYQVYMW 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,020,392
Number of Sequences: 219361
Number of extensions: 1760929
Number of successful extensions: 3883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)