ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4o10 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_DROME (Q9W5U3) Probable chitinase 1 (EC 3.2.1.14)| Length = 508 Score = 33.1 bits (74), Expect = 0.46 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 91 LQDLHARLKREDAVLAPEHPAQVLP--YPPHNDAVHQDQREQPVQAPLHLAVPFCHRQEE 264 L ++H LK +++ P + P YP + +H+ E P P+ + C + E Sbjct: 57 LTEIHNVLKDPPSLMEIPGPIETTPTEYPGMEEEIHESNGEGPEVQPIEAVMQTCENEGE 116 Query: 265 GHDG 276 H+G Sbjct: 117 EHEG 120
>LRC50_HUMAN (Q8NEP3) Leucine-rich repeat-containing protein 50| Length = 725 Score = 32.3 bits (72), Expect = 0.79 Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Frame = +1 Query: 7 PPGPARRQPGATQAPLDHEQDRRSSEARLQDLHARLKREDAVLAPEH--PAQVLPYPPHN 180 PP A+R+ G + + +E L +K ED PE PA+ P PP Sbjct: 399 PPVEAKREDGGPEP-----EGTLPAETLLLSSPVEVKGEDGDGEPEGTLPAEAPPPPPPV 453 Query: 181 DAVHQDQREQPVQA----PLHLAVPFCHRQEEGHDGGRLPEGHCPA 306 + +D ++P L L+ P + +G DG R PEG PA Sbjct: 454 EVKGEDGDQEPEGTLPAETLLLSPPV---KVKGEDGDREPEGTLPA 496
>CZF1_CANAL (P28875) Zinc finger protein 1| Length = 388 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = +1 Query: 43 QAPLDHEQDRRSSEARLQDLHARLKREDAVLAP---EHPAQVL--PYPPHNDAVHQDQRE 207 Q P H ++ +A+ Q L ++L ++A+++ ++P Q PYP + Q Q++ Sbjct: 149 QLPNQHYNLQQRQQAQGQQLKSQLNEQNAMMSASTQQYPVQDFTNPYPNAQNPAEQQQQQ 208 Query: 208 QPVQ 219 QP++ Sbjct: 209 QPLR 212
>SEUSS_ARATH (Q8W234) Transcriptional corepressor SEUSS| Length = 877 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = +1 Query: 13 GPARRQPGATQAPLDHEQDRRSSEARLQDLHARLKREDAVLAPEHPAQVLPYPPHNDA-- 186 GP + +PG H Q ++ + L++L + + A + AQV P H++ Sbjct: 167 GPVKMEPGQVSNDQQHGQVQQQQQKMLRNLGSVKLEPQQIQAMRNLAQVKMEPQHSEQSL 226 Query: 187 -VHQDQREQPVQ 219 + Q QR+Q Q Sbjct: 227 FLQQQQRQQQQQ 238
>LYAG_MOUSE (P70699) Lysosomal alpha-glucosidase precursor (EC 3.2.1.20) (Acid| maltase) Length = 953 Score = 30.8 bits (68), Expect = 2.3 Identities = 24/73 (32%), Positives = 29/73 (39%) Frame = +1 Query: 94 QDLHARLKREDAVLAPEHPAQVLPYPPHNDAVHQDQREQPVQAPLHLAVPFCHRQEEGHD 273 QDLH P H P P H Q+Q EQP +AP VP R + D Sbjct: 40 QDLHESSSGLWKTYRPHHQEGYKPGPLHI----QEQTEQPKEAPTQCDVPPSSRFDCAPD 95 Query: 274 GGRLPEGHCPANG 312 G + + C A G Sbjct: 96 KG-ISQEQCEARG 107
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 30.8 bits (68), Expect = 2.3 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Frame = +1 Query: 25 RQPGATQAPLDHEQDRRSSEA----RLQDLHARLKREDAVLAPEHPAQVLPYPPHNDAVH 192 R + Q PLD +Q ++ + A ++ +H REDA AP PA P PP N Sbjct: 952 RANASPQKPLDLKQLKQRAAAIPPIQVTKVHEP-PREDA--APTKPAPPAPPPPQNLQPE 1008 Query: 193 QDQREQPVQAP 225 D +QP +P Sbjct: 1009 SDAPQQPGSSP 1019
>OAR2_LOCMI (Q25322) Putative tyramine receptor 2 (Tyr-Loc2)| Length = 484 Score = 30.0 bits (66), Expect = 3.9 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +2 Query: 53 STMNKTAGAQKPASKTSTHDSSGKMLFSPLNIRPKSFPILPTMMQSTRISASSQCRRLST 232 +T TA P S+T++ S P ++PKS P+ + + RIS S + R T Sbjct: 355 TTTTTTAVTDSPRSRTASQKGSTA---PPTPVQPKSIPVYQFIEEKQRISLSKERRAART 411
>OAR1_LOCMI (Q25321) Tyramine receptor 1 (Tyr-Loc1)| Length = 484 Score = 30.0 bits (66), Expect = 3.9 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +2 Query: 53 STMNKTAGAQKPASKTSTHDSSGKMLFSPLNIRPKSFPILPTMMQSTRISASSQCRRLST 232 +T TA P S+T++ S P ++PKS P+ + + RIS S + R T Sbjct: 355 TTTTTTAVTDSPRSRTASQKGSTA---PPTPVQPKSIPVYQFIEEKQRISLSKERRAART 411
>DNMT1_RAT (Q9Z330) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)| (DNA methyltransferase I) (DNA MTase RnoIP) (MCMT) (M.RnoIP) Length = 1622 Score = 30.0 bits (66), Expect = 3.9 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = +1 Query: 55 DHEQDRRSSEARLQDLHARLKREDAVLAPEHPAQVLPYPPH---NDAVHQDQREQPVQAP 225 D E+D+RSS R Q KR E Q+ P PP D + +R+ + P Sbjct: 273 DDEKDKRSSRPRSQPRDLATKRR----PKEEVEQITPEPPEGKDEDEREEKRRKTTRKKP 328 Query: 226 LHLAVPFCHRQEEGHDGGR 282 L++P R E G+ Sbjct: 329 EPLSIPVQSRVERKASQGK 347
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 30.0 bits (66), Expect = 3.9 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Frame = +1 Query: 4 HPPGPARRQ-PGATQAPLDHEQDRRSSEARLQD---LHARLKREDAVLAPEHPAQVLPYP 171 H P ++Q A A H+Q ++ + + Q + + + L P ++L P Sbjct: 1087 HLLSPQQQQLAAAVAAAAQHQQQQQQQQQQQQQAKLMGGVVDMKPMFLGPALKPELLQAP 1146 Query: 172 P-HNDAVHQDQRE---QPVQAPLHLAVPFCHRQEEGHDG 276 P H+ A Q Q++ Q QA HL++ H+Q++ G Sbjct: 1147 PMHSPAQQQQQQQQQQQQQQASPHLSLSSPHQQQQQQQG 1185
>KI59C_DROME (Q9W1U4) Kinesin-like protein Klp59C (Kinesin-like protein at| cytological position 59C) Length = 626 Score = 29.6 bits (65), Expect = 5.1 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 20 PGGSPEQLRHLSTMNKTAGAQKPASKTSTHDSSGKML 130 PGG + +H +T N +QKP SK T+ +SG+ L Sbjct: 563 PGGGNQAQQHTNTANDLNRSQKPTSK-PTYPTSGQQL 598
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 29.6 bits (65), Expect = 5.1 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +1 Query: 7 PPGPARRQPGATQAPLDHEQDRRSSEARLQDLHAR---LKREDAVLAPEHPAQVLPYPPH 177 P P R Q PLD +D S + Q L + L R AV P P P Sbjct: 2279 PERPLERTDSRPQ-PLDKVRDLAGSGTKSQSLVSSQRPLDRPPAVAGPRPQLSDKPSPVT 2337 Query: 178 NDAVHQDQREQPVQAPLHLAVP 243 + + R QP++ PL A P Sbjct: 2338 SPSSSPSVRSQPLERPLGTADP 2359
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 29.6 bits (65), Expect = 5.1 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 6/89 (6%) Frame = +2 Query: 50 LSTMNKTAGAQKPASKTSTHDSSGKMLFSPLNIRPK----SFPILPTMMQSTRI--SASS 211 L + K + AS+T SS L ++P S P P S R S S Sbjct: 1072 LGSWGKGSSGGAKASETDALRSSASSLNRFSALQPPAPSGSTPSTPVEFDSRRTLTSRGS 1131 Query: 212 QCRRLSTSPFPSVTARRKDMMEGVFRKDI 298 R + P PS TAR M G KD+ Sbjct: 1132 MGREKNDKPLPSATARPNTFMRGGSSKDL 1160
>IL4_MESAU (Q60440) Interleukin-4 precursor (IL-4) (B-cell stimulatory factor| 1) (BSF-1) (Lymphocyte stimulatory factor 1) Length = 147 Score = 29.3 bits (64), Expect = 6.7 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = -2 Query: 171 RIGKDLGRMFRGENSIFPLESC 106 R+ KDL +++RG +S+FP +SC Sbjct: 93 RVLKDLKKLYRGISSLFPQKSC 114
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 29.3 bits (64), Expect = 6.7 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = +2 Query: 29 SPEQLRHLSTMNKTAGAQKPASKTSTHDSSGKMLFSPLNIRPKSFPILPTMMQSTRISAS 208 SP S++ T+ + S++ST SS SP + S + + ++S Sbjct: 227 SPSSTSTSSSLTSTSSSSTSTSQSSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASS 286 Query: 209 SQCRRLSTSPFPSVTA 256 + STS PS+T+ Sbjct: 287 TSTSSYSTSTSPSLTS 302
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 29.3 bits (64), Expect = 6.7 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 6/85 (7%) Frame = +1 Query: 7 PPGPARRQPGA------TQAPLDHEQDRRSSEARLQDLHARLKREDAVLAPEHPAQVLPY 168 PP P+ QP +Q + E+D +D A + +AP HP P Sbjct: 1633 PPAPSPLQPSGHDSDNWSQHGDEEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVSTPPV 1692 Query: 169 PPHNDAVHQDQREQPVQAPLHLAVP 243 P + A Q P P+ + P Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPP 1717
>PRL1_OREMO (P09319) Prolactin-1 precursor (Prolactin I) (PRL-188)| Length = 212 Score = 29.3 bits (64), Expect = 6.7 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = +1 Query: 10 PGPARRQPGATQAPLDHEQDRRSSEARLQDLHARLKR--EDAVLAPEHPAQVLPYPPHND 183 P PA + Q P+D +Q + SE+ L L L + D ++ A LP+P + Sbjct: 65 PRPAMCHTSSLQTPIDKDQALQVSESDLMSLARSLLQAWSDPLVVLSSSASTLPHPAQST 124 Query: 184 AVHQDQREQ 210 ++ Q Q Sbjct: 125 IFNKIQEMQ 133
>PRL1_ONCTS (P69131) Prolactin-1 precursor (Prolactin I) (PRL-I)| Length = 211 Score = 28.9 bits (63), Expect = 8.7 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = +1 Query: 10 PGPARRQPGATQAPLDHEQDRRSSEARLQDL--HARLKREDAVLAPEHPAQVLPYPPHND 183 P P+ + Q P D EQ + SE L L + L D +L A LP+ P N Sbjct: 64 PRPSMCHTSSLQTPKDKEQALKVSENELISLARYLLLAWNDPLLLLSSEAPTLPHTPSNG 123 Query: 184 AVHQDQRE 207 + RE Sbjct: 124 DISSKIRE 131
>PRL1_ONCKE (P69130) Prolactin-1 precursor (Prolactin I) (PRL-I)| Length = 211 Score = 28.9 bits (63), Expect = 8.7 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = +1 Query: 10 PGPARRQPGATQAPLDHEQDRRSSEARLQDL--HARLKREDAVLAPEHPAQVLPYPPHND 183 P P+ + Q P D EQ + SE L L + L D +L A LP+ P N Sbjct: 64 PRPSMCHTSSLQTPKDKEQALKVSENELISLARYLLLAWNDPLLLLSSEAPTLPHTPSNG 123 Query: 184 AVHQDQRE 207 + RE Sbjct: 124 DISSKIRE 131
>MURA1_LEGPL (Q5WYX3) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 507 Score = 28.9 bits (63), Expect = 8.7 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +2 Query: 23 GGSPEQLRHLSTMNKTAGAQKPASKTSTHDSSGKMLFSPLNIRPKSFPILPTMMQSTRIS 202 G +P+ L + + K AGA+ S G+ LNI K +P PT +QS +S Sbjct: 276 GVNPDYLVAVLSELKCAGAKITCDSDSIQLDMGEEYGESLNITTKPYPGFPTDLQSLFLS 335 Query: 203 ASSQCR 220 + R Sbjct: 336 LTCVLR 341
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 28.9 bits (63), Expect = 8.7 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = -3 Query: 461 QKQAEQQRLCSALHHYYRSSDKFCSRPNSSQVNSVQSHRK 342 Q++ E +RLC L + ++ KF + P+S +N ++ ++ Sbjct: 191 QRKTEFRRLCELLRSHLGNASKFSNAPHSINLNDAETMQR 230
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 28.9 bits (63), Expect = 8.7 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Frame = +1 Query: 10 PGPARRQPGATQAPLD--------HEQDRRSSEARLQDLHARLKREDAVLAPEHPAQVLP 165 P P ++QP +Q P ++Q +S +LQ ++ + P H P Sbjct: 476 PHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPS--QPPHQQSPAP 533 Query: 166 YPPHNDAVHQDQREQPVQAPLHLAVPFCHRQEE 264 YP Q + QP + P+ +Q + Sbjct: 534 YPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQ 566
>K1543_MOUSE (Q80VC9) Protein KIAA1543| Length = 1252 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/56 (30%), Positives = 22/56 (39%) Frame = +1 Query: 1 AHPPGPARRQPGATQAPLDHEQDRRSSEARLQDLHARLKREDAVLAPEHPAQVLPY 168 A P PARR P A ++P S + +L VL P H LP+ Sbjct: 752 AASPSPARRAPAARRSPGPGPSPTPRSPKHARPAELKLAPLTRVLTPPHDVDSLPH 807 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,559,015 Number of Sequences: 219361 Number of extensions: 1485761 Number of successful extensions: 5838 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5833 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
