ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC107365.2| Danio rerio, clone -241I7, complete sequence 42 1.1
2emb|AL627248.7| Zebrafish DNA sequence from clone RP71-1G18 in l... 40 4.5
3emb|BX470117.7| Zebrafish DNA sequence from clone CH211-204N10 i... 40 4.5

>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    ttatcgtctatctatagccta 167
              |||||||||||||||||||||
Sbjct: 106188 ttatcgtctatctatagccta 106168



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>emb|AL627248.7| Zebrafish DNA sequence from clone RP71-1G18 in linkage group 2 Contains
              three novel genes, a novel gene similar to human CASQ1
              (calsequestrin 1), six novel genes similar to vertebrate
              C1Q (gliacolin), a novel gene similar to human HNRPC
              (heterogeneous nuclear ribonucleoprotein C (C1/C2)), a
              novel gene for a protein similar to human H326 protein, two
              novel genes for proteins similar to human apolipoproteins,
              a novel gene similar to human TEP1 (telomerase-associated
              protein 1) and a CpG island, complete sequence
          Length = 143586

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    ataatatggacctgctggat 186
              ||||||||||||||||||||
Sbjct: 122457 ataatatggacctgctggat 122476



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>emb|BX470117.7| Zebrafish DNA sequence from clone CH211-204N10 in linkage group 19,
             complete sequence
          Length = 169993

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   cgaagcaactacagtacatt 145
             ||||||||||||||||||||
Sbjct: 60684 cgaagcaactacagtacatt 60703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,895,883
Number of Sequences: 3902068
Number of extensions: 1895883
Number of successful extensions: 32243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32238
Number of HSP's gapped (non-prelim): 5
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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