Clone Name | baak4o04 |
---|---|
Clone Library Name | barley_pub |
>RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PWS4.3) Length = 174 Score = 32.7 bits (73), Expect = 0.26 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +3 Query: 21 AFRPPGCEESGKA 59 AFRPPGCEESGKA Sbjct: 162 AFRPPGCEESGKA 174
>RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PW9) Length = 175 Score = 32.7 bits (73), Expect = 0.26 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = +3 Query: 21 AFRPPGCEESGKA 59 AFRPPGCEESGKA Sbjct: 163 AFRPPGCEESGKA 175
>RBS3_WHEAT (P07398) Ribulose bisphosphate carboxylase small chain clone 512| (EC 4.1.1.39) (RuBisCO small subunit) (Fragment) Length = 113 Score = 31.6 bits (70), Expect = 0.57 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +3 Query: 21 AFRPPGCEESGKA 59 AF+PPGCEESGKA Sbjct: 101 AFKPPGCEESGKA 113
>RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 Score = 30.4 bits (67), Expect = 1.3 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = +3 Query: 21 AFRPPGCEESGKA 59 AF+PPGC+ESGKA Sbjct: 162 AFKPPGCQESGKA 174
>RBS_AEGTA (Q38793) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 175 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = +3 Query: 21 AFRPPGCEESGKA 59 A +PPGCEESGKA Sbjct: 163 ASKPPGCEESGKA 175 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,134,775 Number of Sequences: 219361 Number of extensions: 516368 Number of successful extensions: 983 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 973 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 983 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)