ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4o04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, complete cds, clone:6, subclone:16 Length = 5980 Score = 232 bits (117), Expect = 4e-58 Identities = 209/236 (88%), Gaps = 9/236 (3%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| | Sbjct: 1203 gcagtgcgtcagcttcat-cgcattcaggccaccgggttgcgaggagtctggcaaggcct 1261 Query: 61 aaactacgaggtgaaacaatggcctatgtcgtatgaaggtcttctgtgaacttcactttt 120 |||||||||| | |||||||||||||| |||||| ||||| |||||||||||||||| Sbjct: 1262 aaactacgagttaaaacaatggcctat---gtatgattgtcttttgtgaacttcactttt 1318 Query: 121 gtccatgactctgctttccgactagagcataatttt-cttctctatgatctgtgtttgta 179 ||||| |||||||||| ||||| |||||||| |||| |||| ||||||||||||||||| Sbjct: 1319 gtccaggactctgcttcccgaccagagcatatttttccttcggtatgatctgtgtttgta 1378 Query: 180 cgagcattggttgtggagcatatatgcatatgtaaattctagcacggcctacacat 235 ||| ||| ||||||||||| |||||||||||||||||||||| | |||||||| Sbjct: 1379 cgaacataggttgtggagc----atgcatatgtaaattctagcaccggctacacat 1430 Score = 127 bits (64), Expect = 2e-26 Identities = 165/195 (84%), Gaps = 9/195 (4%) Strand = Plus / Plus Query: 42 gaggagtccggcaaggcataaactacgaggtgaaacaatggcctatgtcgtatgaaggtc 101 ||||||||||||||||| || |||| ||| |||||||||||||||| ||| ||||||| Sbjct: 5647 gaggagtccggcaaggcctagactatgagttgaaacaatggcctat---gtacgaaggtc 5703 Query: 102 ttctgtgaacttcacttttgtccatgactctgctttccgactagagcataattttc-ttc 160 || |||||||||||||||| |||| |||||||| | || || |||||||| ||||| ||| Sbjct: 5704 ttttgtgaacttcacttttctccacgactctgc-tgcctaccagagcatatttttcgttc 5762 Query: 161 tctatgatctgtgtttgtacgagcattggttgtggagcatatatgcatatgtaaattcta 220 | ||| || ||||| ||||||| ||||||||||||||| ||||| ||||||||||| Sbjct: 5763 tgtataatatgtgtatgtacgaacattggttgtggagc----gtgcatgtgtaaattcta 5818 Query: 221 gcacggcctacacat 235 |||| | |||||||| Sbjct: 5819 gcactgactacacat 5833 Score = 87.7 bits (44), Expect = 2e-14 Identities = 84/96 (87%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 106 gtgaacttcacttttgtccatgactctgctttccgactagagcataa-ttttcttctcta 164 ||||||||||||||| |||| |||||||||||||||| ||||||| |||| |||| || Sbjct: 4358 gtgaacttcacttttctccacgactctgctttccgacctaagcataatttttgttctgta 4417 Query: 165 tgatctgtgtttgtacgagcattggttgtggagcat 200 |||||||||| ||||| | ||| ||||||||||||| Sbjct: 4418 tgatctgtgtatgtacaaacataggttgtggagcat 4453
>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) gene, exons 1 and 2 Length = 2205 Score = 176 bits (89), Expect = 2e-41 Identities = 117/125 (93%), Gaps = 1/125 (0%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 1449 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgaggagtccggcaaggcct 1507 Query: 61 aaactacgaggtgaaacaatggcctatgtcgtatgaaggtcttctgtgaacttcactttt 120 |||||| ||| |||||||||||||||| || ||||||| |||| |||||||||||||||| Sbjct: 1508 aaactatgagttgaaacaatggcctatctcatatgaagatcttttgtgaacttcactttt 1567 Query: 121 gtcca 125 ||||| Sbjct: 1568 gtcca 1572
>emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putative rubisco small subunit (rbcS gene) Length = 518 Score = 99.6 bits (50), Expect = 4e-18 Identities = 57/58 (98%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 458 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgaggagtccggcaaggc 514
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 Score = 95.6 bits (48), Expect = 6e-17 Identities = 61/64 (95%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| Sbjct: 554 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgaggagtccggcaaggcat 612 Query: 61 aaac 64 |||| Sbjct: 613 aaac 616
>dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, complete cds, clone:p13-1 Length = 985 Score = 91.7 bits (46), Expect = 1e-15 Identities = 56/58 (96%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 925 gcagtgcgtcagcttcatt-gccttcaggccaccgggttgcgaggagtccggcaaggc 981
>dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, complete cds, clone:p10-1 Length = 629 Score = 91.7 bits (46), Expect = 1e-15 Identities = 56/58 (96%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 569 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgcgaggagtccggcaaggc 625
>dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase Small subunit, complete cds, clone:p6-1 Length = 638 Score = 91.7 bits (46), Expect = 1e-15 Identities = 56/58 (96%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 578 gcagtgcgtcagcttcat-cgcattcaggccaccgggttgcgaggagtccggcaaggc 634
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC 4.1.1.39 ribulosebisphosphate carboxylase) clones 234 and 406 Length = 743 Score = 87.7 bits (44), Expect = 2e-14 Identities = 60/64 (93%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| | Sbjct: 433 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgaggagtccggcaaggcct 491 Query: 61 aaac 64 |||| Sbjct: 492 aaac 495
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase small subunit mRNA, clone pTS406, 3' end Length = 317 Score = 87.7 bits (44), Expect = 2e-14 Identities = 60/64 (93%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| | Sbjct: 7 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgaggagtccggcaaggcct 65 Query: 61 aaac 64 |||| Sbjct: 66 aaac 69
>dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, complete cds, clone:p9-1 Length = 739 Score = 83.8 bits (42), Expect = 2e-13 Identities = 55/58 (94%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| Sbjct: 679 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgaggagtccggcaaggc 735
>dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, complete cds, clone:p2-1 Length = 653 Score = 83.8 bits (42), Expect = 2e-13 Identities = 55/58 (94%), Gaps = 1/58 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| Sbjct: 593 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgaggagtccggcaaggc 649
>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC 4.1.1.39) (ribulosebisphosphate carboxylase, clone 512) Length = 611 Score = 79.8 bits (40), Expect = 4e-12 Identities = 59/64 (92%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| | Sbjct: 282 gcagtgcgtcagcttcatt-gccttcaagccaccgggctgcgaggagtccggcaaggcct 340 Query: 61 aaac 64 |||| Sbjct: 341 aaac 344
>dbj|AB020958.1| Triticum aestivum DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone CS-B2 Length = 781 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 737 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 781
>dbj|AB020955.1| Triticum timopheevii subsp. armeniacum DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Ara-B Length = 787 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 743 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 787
>dbj|AB020954.1| Triticum urartu DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Ura-B Length = 787 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 743 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 787
>dbj|AB020953.1| Aegilops squarrosa DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Squ-B Length = 781 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 737 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 781
>dbj|AB020952.1| Aegilops searsii DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Sea-B Length = 728 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 684 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 728
>dbj|AB020950.1| Aegilops sharonensis DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Sha-B Length = 792 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 748 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 792
>dbj|AB020949.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Lon-B Length = 792 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 748 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 792
>dbj|AB020946.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe1-B Length = 787 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 743 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 787
>dbj|AB020944.1| Agropyron intermedium DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Agr-A Length = 604 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 560 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 604
>dbj|AB020943.1| Hordeum vulgare DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Hor-A Length = 605 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 605
>dbj|AB020939.1| Triticum timopheevii subsp. armeniacum DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Ara-A Length = 604 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 560 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 604
>dbj|AB020936.1| Aegilops bicornis DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Bic-A Length = 605 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 605
>dbj|AB020935.1| Aegilops sharonensis DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Sha-A Length = 605 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 605
>dbj|AB020934.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Lon-A3 Length = 605 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 605
>dbj|AB020933.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Lon-A2 Length = 605 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 605
>dbj|AB020932.1| Aegilops longissima DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Lon-A1 Length = 605 Score = 75.8 bits (38), Expect = 6e-11 Identities = 45/46 (97%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcgagga 605
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate carboxylase/oxygenase, small subunit Length = 837 Score = 71.9 bits (36), Expect = 9e-10 Identities = 58/64 (90%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 ||||| |||||||||||| ||||| || ||||||||| |||||||||||||||||||| | Sbjct: 514 gcagtccgtcagcttcat-cgcctccaagccaccgggctgcgaggagtccggcaaggcct 572 Query: 61 aaac 64 |||| Sbjct: 573 aaac 576
>emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5 Length = 845 Score = 71.9 bits (36), Expect = 9e-10 Identities = 57/63 (90%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||| Sbjct: 535 gcagtgcgtcagcttcatt-gccttcaggccaccangctgcgaggaatccggcaaggcat 593 Query: 61 aaa 63 ||| Sbjct: 594 aaa 596
>dbj|AB020959.1| Secale cereale DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Sec-B Length = 789 Score = 67.9 bits (34), Expect = 1e-08 Identities = 41/42 (97%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcg 42 |||||||||||||||||| ||||||||||||||||||||||| Sbjct: 745 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgcg 785
>dbj|AB020957.1| Triticum aestivum DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone CS-B1 Length = 787 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct: 743 gcagtgcgtcagcttcat-cgcctttaggccaccgggttgcgagga 787
>dbj|AB020948.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe3-B Length = 772 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 728 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgcgagga 772
>dbj|AB020942.1| Secale cereale DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Sec-A Length = 591 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct: 547 gcagtgcgtcagcttcat-cgcctttaggccaccgggttgcgagga 591
>dbj|AB020941.1| Triticum aestivum DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone CS-A Length = 605 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgcgagga 605
>dbj|AB020940.1| Triticum turgidum subsp. dicoccoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Dic-A Length = 605 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 561 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgcgagga 605
>dbj|AB020937.1| Aegilops searsii DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Sea-A Length = 611 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct: 567 gcagtgcgtcagcttcat-cgcctttaggccaccgggttgcgagga 611
>dbj|AB020930.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe3-A2 Length = 604 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 560 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgcgagga 604
>dbj|AB020929.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe3-A1 Length = 604 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 560 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgcgagga 604
>dbj|AB020928.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe2-A Length = 604 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 560 gcagtgcgtcagcttcag-cgccttcaggccaccgggttgcgagga 604
>dbj|AB020960.1| Bromus catharticus DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Bro-B Length = 784 Score = 67.9 bits (34), Expect = 1e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 740 gcagtgcgtcagcttcat-cgccttcaagccaccgggttgcgagga 784
>dbj|AB020951.1| Aegilops bicornis DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Bic-B Length = 783 Score = 65.9 bits (33), Expect = 6e-08 Identities = 40/41 (97%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgc 41 |||||||||||||||||| |||||||||||||||||||||| Sbjct: 744 gcagtgcgtcagcttcat-cgccttcaggccaccgggttgc 783
>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit mRNA, complete cds Length = 816 Score = 63.9 bits (32), Expect = 2e-07 Identities = 57/64 (89%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggcat 60 |||||||||||||||||| ||| |||| |||||| || ||| ||||||| |||||||||| Sbjct: 488 gcagtgcgtcagcttcat-cgctttcaagccaccaggctgccaggagtcgggcaaggcat 546 Query: 61 aaac 64 |||| Sbjct: 547 aaac 550
>gb|AF192777.1|AF192777 Avena clauda clone Cl9 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF192776.1|AF192776 Avena clauda clone Cl5 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF192775.1|AF192775 Avena strigosa clone Str5 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF192774.1|AF192774 Avena strigosa clone Str3 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF097360.1|AF097360 Avena strigosa ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF104249.1|AF104249 Avena vaviloviana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF096617.1|AF096617 Avena sterilis subsp. ludoviciana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, partial cds Length = 504 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) gene, complete cds Length = 779 Score = 60.0 bits (30), Expect = 3e-06 Identities = 49/54 (90%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 5 tgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccggcaaggc 58 |||||||||||||| |||||||||||||| || |||||||| ||||||||||| Sbjct: 529 tgcgtcagcttcatt-gccttcaggccaccaggctgcgaggaatccggcaaggc 581
>dbj|AB020956.1| Triticum turgidum subsp. dicoccoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Dic-B Length = 787 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 743 gcagtgcgtcagcttcat-cgcctataggccaccgggttgcgagga 787
>dbj|AB020938.1| Aegilops squarrosa DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Squ-A Length = 607 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||| |||||||| ||||||||||| Sbjct: 563 gcagtgcgtcagcttcat-cgcctttaggccaccaggttgcgagga 607
>dbj|AB020931.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe3-A3 Length = 604 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||||||||||||||| ||||| ||||| Sbjct: 560 gcagtgcgtcagcttcat-cgccttcaggccaccaggttgggagga 604
>dbj|AB020927.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Spe1-A1 Length = 604 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 560 gcagtgcgtcagtttcat-cgccttcaggccaccaggttgcgagga 604
>dbj|AB020926.1| Aegilops speltoides DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds Length = 604 Score = 60.0 bits (30), Expect = 3e-06 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct: 560 gcagtgcgtcagtttcat-cgccttcaggccaccaggttgcgagga 604
>gb|AF202648.1|AF202648 Avena maroccana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) gene, partial cds Length = 620 Score = 56.0 bits (28), Expect = 5e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccgg 52 |||||||||||||||||| ||| |||| ||||||||| |||||||| ||||| Sbjct: 569 gcagtgcgtcagcttcat-cgcattcaagccaccgggctgcgaggaatccgg 619
>gb|AF202646.1|AF202646 Avena clauda clone ClG4 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) gene, partial cds Length = 586 Score = 56.0 bits (28), Expect = 5e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccgg 52 |||||||||||||||||| |||||||| |||||| || |||||||| ||||| Sbjct: 535 gcagtgcgtcagcttcat-cgccttcaagccaccaggctgcgaggaatccgg 585
>gb|AF192779.1|AF192779 Avena maroccana clone Ma4 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 54.0 bits (27), Expect = 2e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcga 43 |||||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 453 gcagtgcgtcagcttcat-cgccttcaagccaccgggctgcga 494
>gb|AF202645.1|AF202645 Avena clauda clone ClG2 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) gene, partial cds Length = 600 Score = 52.0 bits (26), Expect = 8e-04 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| |||||| || |||||||| Sbjct: 549 gcagtgcgtcagcttcat-cgccttcaagccaccaggctgcgagga 593
>gb|AF200303.1|AF200303 Avena clauda ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) gene, nuclear gene encoding chloroplast protein, partial cds Length = 594 Score = 52.0 bits (26), Expect = 8e-04 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| |||||| || |||||||| Sbjct: 543 gcagtgcgtcagcttcat-cgccttcaagccaccaggctgcgagga 587
>gb|AF192778.1|AF192778 Avena sterilis subsp. ludoviciana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 52.0 bits (26), Expect = 8e-04 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||| ||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgcgtcagtttcat-cgccttcaagccaccgggctgcgagga 497
>gb|AF097361.1|AF097361 Avena clauda ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 52.0 bits (26), Expect = 8e-04 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||| ||||||||||| |||||||| ||||||||| |||||||| Sbjct: 453 gcagtgtgtcagcttcat-cgccttcaagccaccgggctgcgagga 497
>dbj|AB020945.1| Avena sativa DNA for ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, partial cds, clone Ave-A Length = 590 Score = 52.0 bits (26), Expect = 8e-04 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| |||||||| |||||| || |||||||| Sbjct: 546 gcagtgcgtcagcttcat-cgccttcaagccaccaggctgcgagga 590
>gb|AF202647.1|AF202647 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) gene, partial cds Length = 593 Score = 48.1 bits (24), Expect = 0.013 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgaggagtccgg 52 |||||||||||||||||| ||| |||| |||||| || |||||||| ||||| Sbjct: 542 gcagtgcgtcagcttcat-cgcattcaagccaccaggctgcgaggaatccgg 592
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.051 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 11 agcttcatacgccttcaggccaccgggttgcgaggagtccggc 53 |||||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 11276924 agcttcat-cgcctacaagcccccgggttgcgaggagtccggc 11276965 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gccaccgggttgcgaggagtc 49 ||||||||||||||||||||| Sbjct: 11320088 gccaccgggttgcgaggagtc 11320108
>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence Length = 152251 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 197 gcatatatgcatatgtaaattct 219 ||||||||||||||||||||||| Sbjct: 124198 gcatatatgcatatgtaaattct 124176
>dbj|AK099574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036G21, full insert sequence Length = 947 Score = 46.1 bits (23), Expect = 0.051 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 11 agcttcatacgccttcaggccaccgggttgcgaggagtccggc 53 |||||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 546 agcttcat-cgcctacaagcccccgggttgcgaggagtccggc 587
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.051 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 11 agcttcatacgccttcaggccaccgggttgcgaggagtccggc 53 |||||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 11276595 agcttcat-cgcctacaagcccccgggttgcgaggagtccggc 11276636 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gccaccgggttgcgaggagtc 49 ||||||||||||||||||||| Sbjct: 11319759 gccaccgggttgcgaggagtc 11319779
>emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127267 Score = 46.1 bits (23), Expect = 0.051 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 11 agcttcatacgccttcaggccaccgggttgcgaggagtccggc 53 |||||||| ||||| || ||| ||||||||||||||||||||| Sbjct: 95130 agcttcat-cgcctacaagcccccgggttgcgaggagtccggc 95089 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gccaccgggttgcgaggagtc 49 ||||||||||||||||||||| Sbjct: 51966 gccaccgggttgcgaggagtc 51946
>gb|AF192780.1|AF192780 Avena maroccana clone Ma7 ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 44.1 bits (22), Expect = 0.20 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||| |||| |||||| || |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgcattcaagccaccaggctgcgagga 497
>gb|AF192773.1|AF192773 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 44.1 bits (22), Expect = 0.20 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||| ||||||||||| |||||||| |||||| || |||||||| Sbjct: 453 gcagtgtgtcagcttcat-cgccttcaagccaccaggctgcgagga 497
>gb|AF097359.1|AF097359 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 44.1 bits (22), Expect = 0.20 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||| ||||||||||| |||||||| |||||| || |||||||| Sbjct: 453 gcagtgtgtcagcttcat-cgccttcaagccaccaggctgcgagga 497
>gb|AF104250.1|AF104250 Avena maroccana ribulose-1,5-bisphosphate carboxylase small subunit (rbcS) mRNA, nuclear gene encoding chloroplast protein, partial cds Length = 504 Score = 44.1 bits (22), Expect = 0.20 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 1 gcagtgcgtcagcttcatacgccttcaggccaccgggttgcgagga 46 |||||||||||||||||| ||| |||| |||||| || |||||||| Sbjct: 453 gcagtgcgtcagcttcat-cgcattcaagccaccaggctgcgagga 497
>dbj|AK070257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N11, full insert sequence Length = 845 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gccaccgggttgcgaggagtc 49 ||||||||||||||||||||| Sbjct: 559 gccaccgggttgcgaggagtc 579
>dbj|AK068266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149A10, full insert sequence Length = 1999 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 gccaccgggttgcgaggagtc 49 ||||||||||||||||||||| Sbjct: 561 gccaccgggttgcgaggagtc 581
>emb|AL772245.7| Mouse DNA sequence from clone RP23-332K6 on chromosome 4, complete sequence Length = 70508 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 gcatatatgcatatgtaaatt 217 ||||||||||||||||||||| Sbjct: 46393 gcatatatgcatatgtaaatt 46373
>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete sequence Length = 228428 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 catatatgcatatgtaaattc 218 ||||||||||||||||||||| Sbjct: 158764 catatatgcatatgtaaattc 158744
>gb|AC135567.3| Mus musculus BAC clone RP23-312I24 from chromosome 16, complete sequence Length = 208603 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gcatatatgcatatgtaaat 216 |||||||||||||||||||| Sbjct: 85748 gcatatatgcatatgtaaat 85767
>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence Length = 195446 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gcatatatgcatatgtaaat 216 |||||||||||||||||||| Sbjct: 152885 gcatatatgcatatgtaaat 152904
>gb|AC139748.12| Medicago truncatula clone mth2-15o24, complete sequence Length = 144217 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aggccaccgggttgcgagga 46 |||||||||||||||||||| Sbjct: 57944 aggccaccgggttgcgagga 57925
>emb|AL139404.9| Human DNA sequence from clone RP11-376D11 on chromosome 10 Contains the 5' end of the SSH3BP gene for spectrin SH3 domain binding protein 1, complete sequence Length = 122913 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cttctctatgatctgtgttt 176 |||||||||||||||||||| Sbjct: 101619 cttctctatgatctgtgttt 101638
>emb|CR382380.5| Zebrafish DNA sequence from clone DKEY-112M3 in linkage group 14, complete sequence Length = 84200 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ataattttcttctctatgat 168 |||||||||||||||||||| Sbjct: 30560 ataattttcttctctatgat 30579
>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence Length = 173729 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ttgtggagcatatatgcatatgta 213 |||||||| ||||||||||||||| Sbjct: 56427 ttgtggagaatatatgcatatgta 56450
>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14, complete sequence Length = 181055 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gagcatatatgcatatgtaa 214 |||||||||||||||||||| Sbjct: 42651 gagcatatatgcatatgtaa 42670
>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence Length = 181750 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 gactagagcataattttcttctct 163 ||||||| |||||||||||||||| Sbjct: 134581 gactagaacataattttcttctct 134558
>emb|BX465837.11| Zebrafish DNA sequence from clone DKEY-27C15 in linkage group 19, complete sequence Length = 206154 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttcacttttgtccatgactc 131 |||||||||||||||||||| Sbjct: 165538 ttcacttttgtccatgactc 165557
>emb|AL935140.6| Zebrafish DNA sequence from clone DKEYP-122E7 in linkage group 9, complete sequence Length = 83763 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 cttcacttttgtccatgact 130 |||||||||||||||||||| Sbjct: 18433 cttcacttttgtccatgact 18452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,935,096 Number of Sequences: 3902068 Number of extensions: 1935096 Number of successful extensions: 42265 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 42101 Number of HSP's gapped (non-prelim): 130 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
