Clone Information

BLAST Search Result

Clone Name	baak4n21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloropl...	112	2e-25
2	PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloropl...	111	5e-25
3	PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloropl...	110	6e-25
4	PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloropl...	107	5e-24
5	PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas...	107	9e-24
6	PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chlor...	105	3e-23
7	PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloropl...	105	3e-23
8	PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chlor...	103	8e-23
9	PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloropl...	102	3e-22
10	PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloropl...	81	5e-16
11	PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloropl...	80	2e-15
12	PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloropl...	77	8e-15
13	PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypep...	70	2e-12
14	PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypep...	69	2e-12
15	PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypep...	67	1e-11
16	PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypep...	64	9e-11
17	PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypep...	64	9e-11
18	PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypep...	61	7e-10
19	CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES pro...	34	0.097
20	MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial pre...	30	1.4
21	BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)	29	2.4
22	MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial p...	29	2.4
23	ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86) (A...	29	3.1
24	LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA	28	4.1
25	DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)	28	5.3
26	CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groE...	28	5.3
27	PAND_AGRT5 (Q8U9Q9) Aspartate 1-decarboxylase precursor (EC 4.1....	28	5.3
28	Y905_PICTO (Q6L0L2) UPF0215 protein PTO0905	28	7.0
29	TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein...	28	7.0
30	PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.0
31	USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A p...	28	7.0
32	PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase typ...	28	7.0
33	PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.0
34	PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase t...	28	7.0
35	KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outw...	28	7.0
36	VCAP_SHV21 (Q00999) Major capsid protein (MCP)	27	9.1
37	FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (...	27	9.1
38	PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein ...	27	9.1
39	EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear a...	27	9.1
40	DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)	27	9.1
41	KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Ou...	27	9.1

>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  112 bits (280), Expect = 2e-25
 Identities = 58/61 (95%), Positives = 59/61 (96%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 180
           NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL  +APKDVKIQGVWYAQLES
Sbjct: 267 NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLES 324

Query: 181 N 183
           N
Sbjct: 325 N 325

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>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  111 bits (277), Expect = 5e-25
 Identities = 53/59 (89%), Positives = 56/59 (94%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVKN SSSTG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 274 NVKNTSSSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332

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>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  110 bits (276), Expect = 6e-25
 Identities = 52/59 (88%), Positives = 57/59 (96%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           N+K+ SSSTG ITLSVTKSKPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE
Sbjct: 271 NIKDVSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329

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>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  107 bits (268), Expect = 5e-24
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVKN +S TG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 271 NVKNTASLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329

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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  107 bits (266), Expect = 9e-24
 Identities = 52/60 (86%), Positives = 57/60 (95%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 180
           N K+A+SS G ITLSVT++KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES
Sbjct: 270 NNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329

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>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score =  105 bits (261), Expect = 3e-23
 Identities = 50/59 (84%), Positives = 53/59 (89%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVKN ++S G ITL VTKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE
Sbjct: 274 NVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332

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>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score =  105 bits (261), Expect = 3e-23
 Identities = 49/60 (81%), Positives = 54/60 (90%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 180
           NVKN +S TG IT +VTKS P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES
Sbjct: 274 NVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333

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>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score =  103 bits (258), Expect = 8e-23
 Identities = 48/59 (81%), Positives = 53/59 (89%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVKN ++S G ITL +TKSKPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E
Sbjct: 273 NVKNTAASVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331

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>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  102 bits (253), Expect = 3e-22
 Identities = 49/59 (83%), Positives = 53/59 (89%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           N KN +SS G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE
Sbjct: 272 NNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330

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>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 36/58 (62%), Positives = 43/58 (74%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 174
           N K+ ++S G I   V K   ETGE+ GVFES+QPSDTDLGAK PKD+K  GVWYAQ+
Sbjct: 277 NSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334

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>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 36/59 (61%), Positives = 44/59 (74%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVK   +  G+   SV K  P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct: 233 NVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291

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>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 35/58 (60%), Positives = 42/58 (72%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 174
           NVK+  +  G+   SV K    TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL
Sbjct: 234 NVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291

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>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 174
           NVK      G+I+L VTK    TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++
Sbjct: 214 NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271

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>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 32/59 (54%), Positives = 42/59 (71%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVK A    G I+L + K    +GE+ G FES QPSDTDLGA  PK+VKI+G++YA++E
Sbjct: 215 NVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273

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>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 29/61 (47%), Positives = 43/61 (70%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 180
           N K      G ++L VT+    TGE+ G+FES QPSDTDLGAK P DVK++G++Y ++++
Sbjct: 213 NKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDT 272

Query: 181 N 183
           +
Sbjct: 273 D 273

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>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVK  S + G I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQGV+YA +E
Sbjct: 212 NVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270

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>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 63.9 bits (154), Expect = 9e-11
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVK  S + G I+L+V K    TGE+ G FES Q SD D+GA  P +VKIQGV+YA +E
Sbjct: 212 NVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270

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>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score = 60.8 bits (146), Expect = 7e-10
 Identities = 29/59 (49%), Positives = 40/59 (67%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 177
           NVK   +  G I+L+V+K    TGEV GVF ++QPSDTD+G K   DVK+ G +Y ++E
Sbjct: 215 NVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273

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>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 94

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 7   KNASSSTGNITL-SVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 150
           K    + G I L SV K KP+TGEVI V E       + G K P +VKI
Sbjct: 15  KEEEKTVGGIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60

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>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1)
          Length = 373

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 100 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 231
           QP    +     KD+K++G W +Q + N S  E K  ILI C  IR
Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336

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>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = -1

Query: 284 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 105
           Y H     S ++ PP  P +  Q+M+  TS+     ++     PW  +S  A+ P + S 
Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528

Query: 104 GCTLSKTPITSPVSGLL 54
             + S +  +SP + ++
Sbjct: 529 ASSSSSSSASSPAAAVV 545

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>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38)
          Length = 373

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 100 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 225
           QP    +     KD+K++G W +Q + N S  E K LI   C
Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332

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>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 330

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +1

Query: 37  TLSVTKSKPETGEVIGVFESVQPSD 111
           +LSV+K+K E  EV+GV E VQ SD
Sbjct: 52  SLSVSKAKKEGFEVLGVKELVQQSD 76

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>LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA|
          Length = 598

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -1

Query: 224 HAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 45
           +A ++ IFT   +  D        W++ ++  +    V D  TL++ P   P+ G   V 
Sbjct: 233 NADRLGIFTPKRVDRDVLGCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKPLPGFKKVK 292

Query: 44  LRV---MLPVEEDAF 9
            +V   + PV  D +
Sbjct: 293 PQVYAGLFPVSSDDY 307

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>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)|
          Length = 984

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 282 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 142
           H  +   +D  +S     Y    DEY  FC+   +L  ++P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248

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>CH103_RHIME (Q930X9) 10 kDa chaperonin 3 (Protein Cpn10 3) (groES protein 3)|
          Length = 105

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 10  NASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 150
           N  S  G I     K KP+ GEVI V      S  + G   P DVKI
Sbjct: 18  NTQSKGGIIIPDTAKEKPQEGEVIAVGPG---SRDESGKLIPLDVKI 61

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>PAND_AGRT5 (Q8U9Q9) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 155

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 258 RGNNVFVCVSSIKPE*SVYILASVIISCSPAHDI 359
           RG+ V +C SS   E ++Y  A ++++ +P +D+
Sbjct: 80  RGDQVIICSSSYVEETALYDTAPMVLTFTPKNDV 113

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>Y905_PICTO (Q6L0L2) UPF0215 protein PTO0905|
          Length = 186

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 1   NVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKA 132
           ++KN + +TG   +S+T+ +P    +I       P   D   KA
Sbjct: 84  DIKNINEATGVPVISITRREPNIQRIISAVSRYFPEKVDRALKA 127

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>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)|
          Length = 989

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 64  ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 165
           E G  + VF+  Q SDT +G+    DV+  GV Y
Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380

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>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II alpha) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha)
           (PIP5KII-alpha
          Length = 405

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 295 FILDTHTNTLLPRFFPLHRPT 233
           FI++ H NTLLP+F  ++R T
Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184

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>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 273  THCCLDSFLSTDQPTYACTKDEYL 202
            T  C D  L   QP Y+C +D+Y+
Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203

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>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Diph
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 295 FILDTHTNTLLPRFFPLHRPT 233
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Di
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 295 FILDTHTNTLLPRFFPLHRPT 233
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC|
           2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase
           type II beta) (1-phosphatidylinositol-4-phosphate
           5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta)
           (PIP5KII-beta) (Di
          Length = 416

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 295 FILDTHTNTLLPRFFPLHRPT 233
           FI++ H NTLLP+F  ++R T
Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190

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>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 252 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 133
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138

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>VCAP_SHV21 (Q00999) Major capsid protein (MCP)|
          Length = 1371

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = -1

Query: 284 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 105
           YT + +  ++ S   +  + H    S F      L  S  Y    +   +GA+   +V  
Sbjct: 198 YTERGLKKNVKSDLISMFKTHLVNNSFFLDKSEHLPHSRQYVLGILTEMIGAVCKETVFK 257

Query: 104 GCTLSKTPITSPVSGLLLVTLRVM 33
           G +   T    P+SG+L  T +VM
Sbjct: 258 GISTYSTANGQPISGVLETTDKVM 281

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>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)|
          Length = 5147

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +1

Query: 7    KNASSSTGNITLSVTKSKPETGE----VIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 174
            K  S     IT+      P T       + +F    PS+  L    P D+ I G +  +L
Sbjct: 3736 KQKSQHLLTITVLDQNDNPSTTRSLHIAVSLFNGDLPSNVKLADVRPNDIDIVGDYRCRL 3795

Query: 175  ESN*SIAEVKILIFCAC 225
            + N + +++++ I  AC
Sbjct: 3796 QKNPAQSQLQLAIPRAC 3812

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>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein|
           (Polycystin-1L1) (Fragment)
          Length = 531

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -1

Query: 296 FYTRYTHK----HIVASILSSPPTNPRMHAQKMSI 204
           FY+++T      HI  S+ S PP+   +H Q++++
Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233

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>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)|
           (EBNA-6) (EBNA-3C) (EBNA-4B)
          Length = 992

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 166 RTTHPGS*HPWAPW 125
           R+ HP   HPWAPW
Sbjct: 799 RSQHPCYRHPWAPW 812

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>DPOL_NPVBM (P41712) DNA polymerase (EC 2.7.7.7)|
          Length = 986

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 282 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 142
           H  +   +D  +S     Y    DEY  FC+   +L   +P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYARFCFMYHKLPTEIPETHDDD 248

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>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 252 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 133
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,535,775
Number of Sequences: 219361
Number of extensions: 931151
Number of successful extensions: 2758
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2757
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result