Clone Name	baak4n20
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	RL3_ORYSA (P35684) 60S ribosomal protein L3	295	4e-80
2	RL3A_ARATH (P17094) 60S ribosomal protein L3	281	5e-76
3	RL3B_ARATH (P22738) 60S ribosomal protein L3	280	9e-76
4	RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)	214	8e-56
5	RL3_ASHGO (Q759R7) 60S ribosomal protein L3	212	4e-55
6	RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3	212	4e-55
7	RL3_NEUCR (P59671) 60S ribosomal protein L3	211	7e-55
8	RL3_KLULA (Q6CJR7) 60S ribosomal protein L3	209	3e-54
9	RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)	209	3e-54
10	RL3_TOXCA (P49149) 60S ribosomal protein L3	208	4e-54
11	RL3_RAT (P21531) 60S ribosomal protein L3 (L4)	207	8e-54
12	RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-bindi...	207	8e-54
13	RL3_BOVIN (P39872) 60S ribosomal protein L3	207	1e-53
14	RL3B_SCHPO (P36584) 60S ribosomal protein L3-B	204	8e-53
15	RL3A_SCHPO (P40372) 60S ribosomal protein L3-A	204	8e-53
16	RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3	202	3e-52
17	RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3	202	3e-52
18	RL3_CAEEL (P50880) 60S ribosomal protein L3	199	2e-51
19	RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Mainten...	199	3e-51
20	RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3	199	3e-51
21	RL3_DROME (O16797) 60S ribosomal protein L3	197	8e-51
22	RL3_DICDI (P34113) 60S ribosomal protein L3	197	1e-50
23	RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like	194	9e-50
24	RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like	192	4e-49
25	RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3	177	1e-44
26	RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)	156	3e-38
27	RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P	125	4e-29
28	RL3_PYRHO (O59418) 50S ribosomal protein L3P	124	1e-28
29	RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P	123	2e-28
30	RL3_METKA (Q8TY90) 50S ribosomal protein L3P	115	7e-26
31	RL3_METVA (Q9UWG2) 50S ribosomal protein L3P	113	3e-25
32	RL3_METJA (P54014) 50S ribosomal protein L3P	112	3e-25
33	RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P	112	6e-25
34	RL3_ARCFU (O28354) 50S ribosomal protein L3P	108	5e-24
35	RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P	102	4e-22
36	RL3_NANEQ (P60458) 50S ribosomal protein L3P	101	8e-22
37	RL3_SULAC (Q4JB40) 50S ribosomal protein L3P	101	8e-22
38	RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)	100	3e-21
39	RL3_SULTO (Q975I1) 50S ribosomal protein L3P	99	4e-21
40	RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P	99	5e-21
41	RL3_METTH (O26110) 50S ribosomal protein L3P	98	1e-20
42	RL3_METAC (Q8TRU7) 50S ribosomal protein L3P	95	7e-20
43	RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P	94	2e-19
44	RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P	93	3e-19
45	RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P	92	5e-19
46	RL3_METMA (Q8PV50) 50S ribosomal protein L3P	92	8e-19
47	RL3_THEVO (Q97BX7) 50S ribosomal protein L3P	90	2e-18
48	RL3_CLOTE (Q890N9) 50S ribosomal protein L3	52	5e-07
49	RL3_ENTFA (Q839G4) 50S ribosomal protein L3	50	3e-06
50	RL3_CLOAB (Q97EH8) 50S ribosomal protein L3	50	3e-06
51	RL3_PORGI (Q7MTL3) 50S ribosomal protein L3	49	5e-06
52	RL3_BACST (P28600) 50S ribosomal protein L3	49	5e-06
53	RL3_CHLTE (Q8KAH2) 50S ribosomal protein L3	47	2e-05
54	RK3_CHLS6 (Q7XYP4) 50S ribosomal protein L3, chloroplast precursor	47	2e-05
55	RL3_BACTN (Q8A476) 50S ribosomal protein L3	47	3e-05
56	RL3_BACCR (Q81J42) 50S ribosomal protein L3	46	5e-05
57	RL3_BACAN (Q81VT0) 50S ribosomal protein L3	46	5e-05
58	RL3_BIFLO (Q8G417) 50S ribosomal protein L3	46	5e-05
59	RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3	45	7e-05
60	RL3_LISMO (Q8Y440) 50S ribosomal protein L3	45	1e-04
61	RL3_LISMF (Q71WE6) 50S ribosomal protein L3	45	1e-04
62	RL3_LISIN (Q927K7) 50S ribosomal protein L3	45	1e-04
63	RL3_AQUPY (Q9ZI50) 50S ribosomal protein L3	45	1e-04
64	RL3_BACSU (P42920) 50S ribosomal protein L3 (BL3)	44	2e-04
65	RL3_TROWT (Q83FY6) 50S ribosomal protein L3	44	2e-04
66	RL3_TROW8 (Q83I78) 50S ribosomal protein L3	44	2e-04
67	RL3_THETN (Q8R7V4) 50S ribosomal protein L3	44	2e-04
68	RL3_STRP1 (Q9A1X4) 50S ribosomal protein L3	44	2e-04
69	RL3_OCEIH (Q8ETY2) 50S ribosomal protein L3	44	2e-04
70	RL3_THEMA (P38515) 50S ribosomal protein L3	43	3e-04
71	RM03_BOVIN (Q3ZBX6) Mitochondrial 39S ribosomal protein L3 (L3mt...	42	6e-04
72	RL3_STRP8 (P60452) 50S ribosomal protein L3	42	6e-04
73	RL3_STRP6 (Q5XED5) 50S ribosomal protein L3	42	6e-04
74	RL3_STRP3 (P60451) 50S ribosomal protein L3	42	6e-04
75	RL3_STRA5 (Q8E2D1) 50S ribosomal protein L3	42	6e-04
76	RL3_STRA3 (Q8E7T8) 50S ribosomal protein L3	42	6e-04
77	RL3_AQUAE (O66431) 50S ribosomal protein L3	42	7e-04
78	RM03_HUMAN (P09001) Mitochondrial 39S ribosomal protein L3 (L3mt...	42	7e-04
79	RM03_RAT (P18665) Mitochondrial 39S ribosomal protein L3 (L3mt) ...	42	0.001
80	RM03_MOUSE (Q99N95) Mitochondrial 39S ribosomal protein L3 (L3mt...	42	0.001
81	RL3_STRMU (Q8DS16) 50S ribosomal protein L3	42	0.001
82	RL3_CORDI (P60453) 50S ribosomal protein L3	41	0.001
83	RL3_BACHD (Q9Z9L4) 50S ribosomal protein L3	41	0.001
84	RL3_LEPIN (Q9XD36) 50S ribosomal protein L3	40	0.002
85	RL3_LEPIC (Q72NG1) 50S ribosomal protein L3	40	0.002
86	RL3_GEOSL (P60454) 50S ribosomal protein L3	40	0.003
87	RL3_BORPE (Q7VTD3) 50S ribosomal protein L3	40	0.003
88	RL3_BORPA (Q7W2F6) 50S ribosomal protein L3	40	0.003
89	RL3_BORBR (Q7WRC5) 50S ribosomal protein L3	40	0.003
90	RK3_GUITH (O46894) Chloroplast 50S ribosomal protein L3	40	0.003
91	RL3_THETH (P52860) 50S ribosomal protein L3	40	0.004
92	RL3_THET8 (Q5SHN8) 50S ribosomal protein L3	40	0.004
93	RL3_STRR6 (Q8CWV8) 50S ribosomal protein L3	39	0.005
94	RL3_STRPN (Q97SV5) 50S ribosomal protein L3	39	0.005
95	RL3_CORGL (Q8NT09) 50S ribosomal protein L3	39	0.005
96	RK3B_ARATH (Q9LRN8) 50S ribosomal protein L3-2, chloroplast prec...	39	0.005
97	RL3_DEIRA (Q9RXK2) 50S ribosomal protein L3	39	0.006
98	RL3_NEIMB (P60444) 50S ribosomal protein L3	39	0.006
99	RL3_NEIMA (P60443) 50S ribosomal protein L3	39	0.006
100	RK3_TOBAC (O80360) 50S ribosomal protein L3, chloroplast precurs...	39	0.008
101	RL3_VIBVY (Q7MPI8) 50S ribosomal protein L3	39	0.008
102	RL3_VIBVU (Q8DE39) 50S ribosomal protein L3	39	0.008
103	RL3_PSEAE (Q9HWD5) 50S ribosomal protein L3	39	0.008
104	RL3_SPIKU (P60457) 50S ribosomal protein L3	38	0.010
105	RL3_STAES (Q8CRG0) 50S ribosomal protein L3	38	0.014
106	RL3_STAEQ (Q5HLZ9) 50S ribosomal protein L3	38	0.014
107	RL3_XYLFA (Q9PE76) 50S ribosomal protein L3	38	0.014
108	RL3_WIGBR (Q8D212) 50S ribosomal protein L3	38	0.014
109	RL3_VIBPA (Q87T13) 50S ribosomal protein L3	38	0.014
110	RL3_VIBCH (Q9KNY4) 50S ribosomal protein L3	38	0.014
111	RL3_COREF (Q8FS80) 50S ribosomal protein L3	38	0.014
112	RL3_XYLFT (Q87E82) 50S ribosomal protein L3	37	0.018
113	RL3_STAAC (Q5HDV8) 50S ribosomal protein L3	37	0.018
114	RL3_STAAW (P60450) 50S ribosomal protein L3	37	0.018
115	RL3_STAAS (Q6G771) 50S ribosomal protein L3	37	0.018
116	RL3_STAAR (Q6GEI3) 50S ribosomal protein L3	37	0.018
117	RL3_STAAN (P60449) 50S ribosomal protein L3	37	0.018
118	RL3_STAAM (P60448) 50S ribosomal protein L3	37	0.018
119	RL3_RALSO (Q8XV12) 50S ribosomal protein L3	37	0.018
120	RL3_BUCBP (Q89A68) 50S ribosomal protein L3	37	0.018
121	RL3_STAHJ (Q4L8B4) 50S ribosomal protein L3	37	0.023
122	RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3	37	0.023
123	RL3_MYCTU (P60442) 50S ribosomal protein L3	37	0.023
124	RL3_MYCBO (P60441) 50S ribosomal protein L3	37	0.023
125	RL3_BUCAP (Q8K950) 50S ribosomal protein L3	37	0.023
126	RL3_NITEU (Q82X88) 50S ribosomal protein L3	37	0.030
127	RL3_TREPA (O83219) 50S ribosomal protein L3	37	0.030
128	RL3_MYCGA (O52332) 50S ribosomal protein L3	37	0.030
129	RL3_BORBU (P94267) 50S ribosomal protein L3	37	0.030
130	RL3_FUSNN (Q8RIF5) 50S ribosomal protein L3	36	0.039
131	RL3_BLOFL (Q7VQE8) 50S ribosomal protein L3	36	0.039
132	RL3_HAEDU (Q7VKD2) 50S ribosomal protein L3	36	0.039
133	RL3_LACPL (Q88XY6) 50S ribosomal protein L3	36	0.052
134	RK3A_ARATH (Q9SKX4) 50S ribosomal protein L3-1, chloroplast prec...	36	0.052
135	RL3_MYCLE (P30762) 50S ribosomal protein L3	36	0.052
136	RL3_HAEIN (P44344) 50S ribosomal protein L3	35	0.067
137	RM09_YEAST (P31334) 60S ribosomal protein L9, mitochondrial prec...	35	0.067
138	RL3_PSESM (Q889X1) 50S ribosomal protein L3	35	0.067
139	RL3_MYCCT (P10134) 50S ribosomal protein L3	35	0.067
140	RL3_XANCP (Q8PC49) 50S ribosomal protein L3	35	0.067
141	RL3_XANAC (Q8PNS4) 50S ribosomal protein L3	35	0.067
142	RL3_COXBU (Q83ES4) 50S ribosomal protein L3	35	0.067
143	RL3_ACTAC (P94799) 50S ribosomal protein L3 (Fragment)	35	0.088
144	RL3_PASMU (Q9CL32) 50S ribosomal protein L3	35	0.088
145	RL3_CHRVO (Q7NQF2) 50S ribosomal protein L3	35	0.088
146	RL3_BRAPL (Q9FA04) 50S ribosomal protein L3	35	0.088
147	RL3_CHLCV (Q824Q1) 50S ribosomal protein L3	35	0.11
148	RL3_MYCPU (Q98PY0) 50S ribosomal protein L3	35	0.11
149	RL3_BUCAI (P57591) 50S ribosomal protein L3	35	0.11
150	RL3_MYCPE (Q8EUB3) 50S ribosomal protein L3	34	0.15
151	RL3_STAS1 (Q49ZG8) 50S ribosomal protein L3	34	0.15
152	RL3_CHLPN (Q9Z7Q7) 50S ribosomal protein L3	34	0.15
153	RL3_STRAW (Q82DP5) 50S ribosomal protein L3	34	0.15
154	RL3_LACLA (Q9CDW2) 50S ribosomal protein L3	34	0.15
155	RL3_CHLMU (Q9PJL4) 50S ribosomal protein L3	34	0.20
156	RL3_WOLSU (Q7M8D4) 50S ribosomal protein L3	34	0.20
157	RL3_CHLTR (O84533) 50S ribosomal protein L3	33	0.26
158	RL3_MYCGE (P47397) 50S ribosomal protein L3	33	0.33
159	RL3_PHOLL (Q7MYF1) 50S ribosomal protein L3	33	0.33
160	FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal bo...	33	0.33
161	RL3_CAUCR (Q9A8V3) 50S ribosomal protein L3	33	0.44
162	RL3_PSEPK (Q88QN5) 50S ribosomal protein L3	32	0.57
163	RL3_YERPS (P11252) 50S ribosomal protein L3	32	0.57
164	RL3_YERPE (Q8ZJA9) 50S ribosomal protein L3	32	0.57
165	RL3_MYCPN (P75580) 50S ribosomal protein L3	32	0.57
166	FLGH_PSEPK (Q88ER9) Flagellar L-ring protein precursor (Basal bo...	32	0.57
167	RL3_ONYPE (P60455) 50S ribosomal protein L3	32	0.74
168	RL3_STRCO (Q9L0E0) 50S ribosomal protein L3	32	0.74
169	RL3_SHEON (Q8EK68) 50S ribosomal protein L3	32	0.97
170	RL3_SHIFL (P60447) 50S ribosomal protein L3	32	0.97
171	RL3_SALTY (P60446) 50S ribosomal protein L3	32	0.97
172	RL3_SALTI (P60445) 50S ribosomal protein L3	32	0.97
173	RL3_ECOLI (P60438) 50S ribosomal protein L3	32	0.97
174	RL3_ECOL6 (P60439) 50S ribosomal protein L3	32	0.97
175	RL3_ECO57 (P60440) 50S ribosomal protein L3	32	0.97
176	SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat...	31	1.3
177	HUTI_BACHD (Q9KBE4) Imidazolonepropionase (EC 3.5.2.7) (Imidazol...	31	1.3
178	RL3_BRAJA (Q89J84) 50S ribosomal protein L3	31	1.7
179	HOY1_YARLI (Q99160) Homeobox protein HOY1	31	1.7
180	RL3_RHOPA (P60456) 50S ribosomal protein L3 (RRP-L3)	30	2.2
181	RL3_PLARO (P72233) 50S ribosomal protein L3 (Fragment)	30	2.2
182	PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)	30	2.2
183	RL3_PROMM (Q7V542) 50S ribosomal protein L3	30	2.2
184	PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)	30	3.7
185	RL3_RHOBA (Q7UN20) 50S ribosomal protein L3	30	3.7
186	RK3_ODOSI (P49569) Chloroplast 50S ribosomal protein L3	30	3.7
187	SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat...	29	4.8
188	RL3_PROMA (Q7V9W2) 50S ribosomal protein L3	29	6.3
189	RL3_AGRT5 (Q8UE18) 50S ribosomal protein L3	29	6.3
190	RL3_ANASP (Q8YPH9) 50S ribosomal protein L3	28	8.2
191	MRAY_CHLCH (Q3ANV6) Phospho-N-acetylmuramoyl-pentapeptide-transf...	28	8.2
192	RL3_SYNPX (Q7U4K0) 50S ribosomal protein L3	28	8.2

---

>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  295 bits (755), Expect = 4e-80
 Identities = 140/147 (95%), Positives = 143/147 (97%)
 Frame = +2

Query: 11  RKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 190
           RKMKGLKQKKAHLMEIQINGGTIADKVDYGY FFEKE+P+DAVFQKDEMIDIIGVTKGKG
Sbjct: 168 RKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKG 227

Query: 191 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI
Sbjct: 228 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 287

Query: 371 GKVGQETHDASTEFDRTEKDITPMGGF 451
           GK GQE+H A TEFDRTEKDITPMGGF
Sbjct: 288 GKSGQESHAACTEFDRTEKDITPMGGF 314

---

>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score =  281 bits (719), Expect = 5e-76
 Identities = 129/147 (87%), Positives = 141/147 (95%)
 Frame = +2

Query: 11  RKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 190
           RKMKGLKQKKAH+MEIQINGGTIA KVD+ Y+FFEK++PI+AVFQKDEMIDIIGVTKGKG
Sbjct: 168 RKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKG 227

Query: 191 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE+NKK+Y++
Sbjct: 228 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRL 287

Query: 371 GKVGQETHDASTEFDRTEKDITPMGGF 451
           GKVG E H A TE+DRTEKD+TPMGGF
Sbjct: 288 GKVGTEAHTAMTEYDRTEKDVTPMGGF 314

---

>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score =  280 bits (717), Expect = 9e-76
 Identities = 132/147 (89%), Positives = 139/147 (94%)
 Frame = +2

Query: 11  RKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 190
           RKMKGLKQKKAHL EIQINGG IA KVDY  + FEK+VP+DA+FQKDEMIDIIGVTKGKG
Sbjct: 168 RKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKG 227

Query: 191 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY++
Sbjct: 228 YEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRV 287

Query: 371 GKVGQETHDASTEFDRTEKDITPMGGF 451
           GKVGQETH A TE+DRTEKDITPMGGF
Sbjct: 288 GKVGQETHSAMTEYDRTEKDITPMGGF 314

---

>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score =  214 bits (545), Expect = 8e-56
 Identities = 98/149 (65%), Positives = 123/149 (82%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   LKQKKAHLMEIQ+NGG++ADKVD+  N FEK + ID++F+KDEMID+I VTKG
Sbjct: 165 TQIRKTPLKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N KV+
Sbjct: 225 HGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVF 284

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           +IGK G +  +AST+FD ++K ITPMGGF
Sbjct: 285 RIGK-GSDEGNASTDFDISKKQITPMGGF 312

---

>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score =  212 bits (539), Expect = 4e-55
 Identities = 100/149 (67%), Positives = 122/149 (81%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   L QKKAHL EIQ+NGG++++KVD+    FEK V +D+VF+++EMID+I VTKG
Sbjct: 165 TQVRKTPLVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY
Sbjct: 225 HGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVY 284

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           +IGK G E  +A+TEFDRT+K ITPMGGF
Sbjct: 285 RIGKGGDE-GNAATEFDRTKKTITPMGGF 312

---

>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score =  212 bits (539), Expect = 4e-55
 Identities = 98/149 (65%), Positives = 118/149 (79%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K   L QKKAHL EIQ+NGG+++DKVD+    FEK V +D+VF+KDEM+D+  VTKG
Sbjct: 164 TQIKKTPLAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAVTKG 223

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N KVY
Sbjct: 224 HGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVY 283

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           ++G  G E+  A TEFDRT+K I PMGGF
Sbjct: 284 RVGSAGDESSGA-TEFDRTKKTINPMGGF 311

---

>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score =  211 bits (537), Expect = 7e-55
 Identities = 98/149 (65%), Positives = 120/149 (80%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   LKQKKAHLMEIQINGG++ADKV++G+  FEK V ID++F+KDE+ID+I VTKG
Sbjct: 165 TQIRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G+ GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N K+Y
Sbjct: 225 HGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIY 284

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           +IGK G     A+TE D T+K ITPMGGF
Sbjct: 285 RIGK-GDAEDSAATEVDVTKKKITPMGGF 312

---

>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score =  209 bits (532), Expect = 3e-54
 Identities = 96/149 (64%), Positives = 121/149 (81%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   L QKKAHL EIQ+NGG+++DKVD+    FEK V +D+VF+++EMID++ VTKG
Sbjct: 164 TQVRKTPLSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKG 223

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KVY
Sbjct: 224 HGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVY 283

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           ++GK G +  +A+TEFDRT+K ITPMGGF
Sbjct: 284 RVGK-GDDEANAATEFDRTKKTITPMGGF 311

---

>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score =  209 bits (532), Expect = 3e-54
 Identities = 98/155 (63%), Positives = 128/155 (82%), Gaps = 6/155 (3%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ ++  L+QKKAHLMEIQ+NGGT+A+K+D+     E++VP++ VF +DEMID+IGVTKG
Sbjct: 165 TQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV++TVARAGQ GYHHRTE+NKK+Y
Sbjct: 225 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIY 284

Query: 365 KIG-----KVGQ-ETHDASTEFDRTEKDITPMGGF 451
           KIG     K G+   ++AST++D ++K I P+GGF
Sbjct: 285 KIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGF 319

---

>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score =  208 bits (530), Expect = 4e-54
 Identities = 94/152 (61%), Positives = 122/152 (80%), Gaps = 3/152 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K+   ++KKAH+MEIQINGGT+A+KVD+     EK+VP+D+VF +DEMID IGVTKG
Sbjct: 165 TQMKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV +TVARAGQ GYHHRTE+NKK+Y
Sbjct: 225 KGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIY 284

Query: 365 KIGK---VGQETHDASTEFDRTEKDITPMGGF 451
           ++GK     +   +  T++D TEK + PMGGF
Sbjct: 285 RLGKSCLTEEGKKNGGTDYDITEKSVNPMGGF 316

---

>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score =  207 bits (528), Expect = 8e-54
 Identities = 97/155 (62%), Positives = 128/155 (82%), Gaps = 6/155 (3%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ ++  L+QKKAHLMEIQ+NGGT+A+K+D+     E++VP++ VF +DEMID+IGVTKG
Sbjct: 165 TQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+Y
Sbjct: 225 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIY 284

Query: 365 KIG-----KVGQ-ETHDASTEFDRTEKDITPMGGF 451
           KIG     K G+   ++AST++D ++K I P+GGF
Sbjct: 285 KIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGF 319

---

>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score =  207 bits (528), Expect = 8e-54
 Identities = 97/155 (62%), Positives = 128/155 (82%), Gaps = 6/155 (3%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ ++  L+QKKAHLMEIQ+NGGT+A+K+D+     E++VP++ VF +DEMID+IGVTKG
Sbjct: 165 TQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+Y
Sbjct: 225 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIY 284

Query: 365 KIG-----KVGQ-ETHDASTEFDRTEKDITPMGGF 451
           KIG     K G+   ++AST++D ++K I P+GGF
Sbjct: 285 KIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGF 319

---

>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score =  207 bits (526), Expect = 1e-53
 Identities = 96/155 (61%), Positives = 127/155 (81%), Gaps = 6/155 (3%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ ++  L+QKKAHLME+Q+NGGT+A+K+D+     E++VP+  VF +DEMID+IGVTKG
Sbjct: 165 TQMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+++VARAGQ GYHHRTE+NKK+Y
Sbjct: 225 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIY 284

Query: 365 KIG-----KVGQ-ETHDASTEFDRTEKDITPMGGF 451
           KIG     K G+   ++AST++D ++K I P+GGF
Sbjct: 285 KIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGF 319

---

>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score =  204 bits (519), Expect = 8e-53
 Identities = 96/149 (64%), Positives = 117/149 (78%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   L QKKAHLMEIQ+NGG++ADKV++    FEK V I + F+++EMID+IGVT+G
Sbjct: 163 TQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRG 222

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y
Sbjct: 223 KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIY 282

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           +IG  G +  +AST+FD TEK ITPMGGF
Sbjct: 283 RIG-AGDDAKNASTDFDATEKRITPMGGF 310

---

>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score =  204 bits (519), Expect = 8e-53
 Identities = 96/149 (64%), Positives = 117/149 (78%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   L QKKAHLMEIQ+NGG++ADKV++    FEK V I + F+++EMID+IGVT+G
Sbjct: 163 TQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRG 222

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y
Sbjct: 223 KGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIY 282

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           +IG  G +  +AST+FD TEK ITPMGGF
Sbjct: 283 RIG-AGDDAKNASTDFDATEKRITPMGGF 310

---

>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score =  202 bits (514), Expect = 3e-52
 Identities = 95/149 (63%), Positives = 118/149 (79%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   L QKKAHL EIQ+NGG+I++KVD+    FEK V +D+VF+++EMID I VTKG
Sbjct: 164 TQVRKTPLVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMIDAIAVTKG 223

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y
Sbjct: 224 HGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIY 283

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           +IGK G +  +A+T FDRT+K I PMGGF
Sbjct: 284 RIGK-GDDEGNAATNFDRTKKTINPMGGF 311

---

>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score =  202 bits (514), Expect = 3e-52
 Identities = 96/155 (61%), Positives = 127/155 (81%), Gaps = 6/155 (3%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ ++  L+QKKAHLMEIQ+NGGT+A+K+D+     E++VP++ VF +DEMID+IGVTKG
Sbjct: 165 TQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           KGY+GV +RW   +LPRKTHRGLRKVACIGA HPARV+++VARAGQ GYHHRTE+NKK+Y
Sbjct: 225 KGYKGVTSRWHTKKLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIY 284

Query: 365 KIG-----KVGQ-ETHDASTEFDRTEKDITPMGGF 451
           KIG     K G+   ++AST++D ++K I P+GGF
Sbjct: 285 KIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGF 319

---

>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score =  199 bits (507), Expect = 2e-51
 Identities = 93/152 (61%), Positives = 119/152 (78%), Gaps = 3/152 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K+   +QKKAHL+EIQ+NGGTI  KVD+     EK+V +D VF +DEMID IGVT+G
Sbjct: 166 TQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y
Sbjct: 226 HGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIY 285

Query: 365 KIGK---VGQETHDASTEFDRTEKDITPMGGF 451
           +IGK     +  ++ STEFD T+K ITPMGGF
Sbjct: 286 RIGKSALTEEGKNNGSTEFDLTQKTITPMGGF 317

---

>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score =  199 bits (506), Expect = 3e-51
 Identities = 93/149 (62%), Positives = 117/149 (78%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ +   L QKKAHL EIQ+NGG+I++KVD+    FEK V +D+VF+++EMID I VTKG
Sbjct: 163 TQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKG 222

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N K+Y
Sbjct: 223 HGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIY 282

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           ++GK G +  + +T FDRT+K ITPMGGF
Sbjct: 283 RVGK-GDDEANGATSFDRTKKTITPMGGF 310

---

>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score =  199 bits (506), Expect = 3e-51
 Identities = 93/152 (61%), Positives = 118/152 (77%), Gaps = 3/152 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K+   +QKKAHL+EIQINGGTI  KVD+     EK++ +D VF +DEMID IGVTKG
Sbjct: 166 TQMKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMIDTIGVTKG 225

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV++TVARAGQ G+HHRT +N K+Y
Sbjct: 226 HGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIY 285

Query: 365 KIGK---VGQETHDASTEFDRTEKDITPMGGF 451
           +IGK     +  ++ STEFD T+K I PMGGF
Sbjct: 286 RIGKSALTEEGKNNGSTEFDLTQKTINPMGGF 317

---

>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score =  197 bits (502), Expect = 8e-51
 Identities = 95/148 (64%), Positives = 115/148 (77%), Gaps = 7/148 (4%)
 Frame = +2

Query: 29  KQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVT 208
           +QKKAH+MEIQ+NGG+I DKV +     EK + +  VF +DEMID +GVTKGKG++GV +
Sbjct: 173 RQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTS 232

Query: 209 RWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQE 388
           RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y+IG  G  
Sbjct: 233 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIG-AGIH 291

Query: 389 THD-------ASTEFDRTEKDITPMGGF 451
           T D       ASTE+D T+K ITPMGGF
Sbjct: 292 TKDGKVIKNNASTEYDLTDKSITPMGGF 319

---

>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score =  197 bits (501), Expect = 1e-50
 Identities = 92/146 (63%), Positives = 114/146 (78%), Gaps = 4/146 (2%)
 Frame = +2

Query: 26  LKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVV 205
           L QKKAH++EIQ+NGG+I +KV++    FEK V +  VF ++E+ID+IGVTKGKG+ GV+
Sbjct: 173 LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVI 232

Query: 206 TRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV-- 379
            RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y+IG+   
Sbjct: 233 KRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQP 292

Query: 380 --GQETHDASTEFDRTEKDITPMGGF 451
             G++     TEFD TEK I PMGGF
Sbjct: 293 EDGKQISTGKTEFDLTEKTINPMGGF 318

---

>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score =  194 bits (493), Expect = 9e-50
 Identities = 90/156 (57%), Positives = 120/156 (76%), Gaps = 7/156 (4%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K+   +QKKAH+ME+Q+NGGT+A+KV +     EK+VP+ +VF ++E+ID+I VTKG
Sbjct: 165 TQMKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           +G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y
Sbjct: 225 RGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIY 284

Query: 365 KIGKVGQETHD-------ASTEFDRTEKDITPMGGF 451
           +IG+ G    D       AST +D T+K ITP+GGF
Sbjct: 285 RIGR-GLHMEDGKVVKNNASTSYDVTDKSITPLGGF 319

---

>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score =  192 bits (487), Expect = 4e-49
 Identities = 90/156 (57%), Positives = 118/156 (75%), Gaps = 7/156 (4%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K+   +QKKAH+MEIQ+NGGT+A+KV +     EK+VP+ +VF + E+ID+I VTKG
Sbjct: 165 TQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKG 224

Query: 185 KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           +G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK++
Sbjct: 225 RGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIF 284

Query: 365 KIGKVGQETHD-------ASTEFDRTEKDITPMGGF 451
           +IG+ G    D       AST +D T K ITP+GGF
Sbjct: 285 RIGR-GPHMEDGKLVKNNASTSYDVTAKSITPLGGF 319

---

>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score =  177 bits (449), Expect = 1e-44
 Identities = 85/145 (58%), Positives = 110/145 (75%)
 Frame = +2

Query: 17  MKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYE 196
           +KGL  KKAH+ EIQ+NGG+I++KV++     EKE+ I  VF  +E ID IGVTKGKG++
Sbjct: 164 IKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQ 223

Query: 197 GVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 376
           G V R+GV + PRK+ +G+RKVACIGAWHP+RV Y++ARAGQ G+H RTE NK+VY I  
Sbjct: 224 GTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMI-- 281

Query: 377 VGQETHDASTEFDRTEKDITPMGGF 451
            G  + +  TEFD TEK I+PMGGF
Sbjct: 282 -GNGSSNIKTEFDLTEKPISPMGGF 305

---

>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)|
          Length = 130

 Score =  156 bits (394), Expect = 3e-38
 Identities = 73/116 (62%), Positives = 93/116 (80%), Gaps = 6/116 (5%)
 Frame = +2

Query: 122 VPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSY 301
           VP++ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPAR ++
Sbjct: 2   VPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAF 61

Query: 302 TVARAGQNGYHHRTEMNKKVYKIG-----KVGQ-ETHDASTEFDRTEKDITPMGGF 451
           +VARAGQ GYHHRTE+NKK+YKIG     K G+   ++  T++D ++K I P+G F
Sbjct: 62  SVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRF 117

---

>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P|
          Length = 365

 Score =  125 bits (315), Expect = 4e-29
 Identities = 63/140 (45%), Positives = 88/140 (62%)
 Frame = +2

Query: 32  QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 211
           +KK  +ME  I G ++ +K +Y      KE+ +  V ++ E++D+I VTKGKG +G V R
Sbjct: 177 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 236

Query: 212 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQET 391
           WG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G+  
Sbjct: 237 WGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLK 296

Query: 392 HDASTEFDRTEKDITPMGGF 451
            D +TE      +ITP GGF
Sbjct: 297 LDENTEI-----EITPKGGF 311

---

>RL3_PYRHO (O59418) 50S ribosomal protein L3P|
          Length = 362

 Score =  124 bits (310), Expect = 1e-28
 Identities = 62/140 (44%), Positives = 86/140 (61%)
 Frame = +2

Query: 32  QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 211
           +KK  +ME  I G ++ +K +Y      KE+ +  V ++ E++D+I VTKGKG +G V R
Sbjct: 175 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKR 234

Query: 212 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQET 391
           WG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G+  
Sbjct: 235 WGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-- 292

Query: 392 HDASTEFDRTEKDITPMGGF 451
                  D  E +ITP GGF
Sbjct: 293 ----LVIDGNEIEITPKGGF 308

---

>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P|
          Length = 361

 Score =  123 bits (308), Expect = 2e-28
 Identities = 62/140 (44%), Positives = 86/140 (61%)
 Frame = +2

Query: 32  QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 211
           +KK  +ME  I G ++ +K +Y      KE+ +  V ++ E++D+I VTKGKG +G V R
Sbjct: 174 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 233

Query: 212 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKVGQET 391
           WG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  IG+ G+  
Sbjct: 234 WGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-- 291

Query: 392 HDASTEFDRTEKDITPMGGF 451
                  D  E +ITP GGF
Sbjct: 292 ----LVIDGNEIEITPKGGF 307

---

>RL3_METKA (Q8TY90) 50S ribosomal protein L3P|
          Length = 361

 Score =  115 bits (287), Expect = 7e-26
 Identities = 61/151 (40%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T+ K  G+ +KK  +ME +I G  + ++ +Y      +E+    VF + E++D+  +TKG
Sbjct: 151 TQPKKAGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKG 210

Query: 185 KGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 358
           KG++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK+
Sbjct: 211 KGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKR 270

Query: 359 VYKIGKVGQETHDASTEFDRTEKDITPMGGF 451
           + KIG+ G+E              +TP GGF
Sbjct: 271 ILKIGEDGEE--------------VTPRGGF 287

---

>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score =  113 bits (282), Expect = 3e-25
 Identities = 60/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T  K  G+ +KK  ++EI++ G ++A+K+ Y  +   K + I+ VF+  E ID + VTKG
Sbjct: 144 TNPKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKG 203

Query: 185 KGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 358
           KG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK+
Sbjct: 204 KGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKR 263

Query: 359 VYKIGKVGQETHDASTEFDRTEKDITPMGGF 451
           + K+G  G E              ITP GGF
Sbjct: 264 ILKLGSEGAE--------------ITPKGGF 280

---

>RL3_METJA (P54014) 50S ribosomal protein L3P|
          Length = 335

 Score =  112 bits (281), Expect = 3e-25
 Identities = 62/151 (41%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T  K+  L +KK  ++EI+I G  I ++++Y      K++ I  VFQ+ E++D IGVTKG
Sbjct: 145 TNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKG 204

Query: 185 KGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 358
           KG++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK+
Sbjct: 205 KGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKR 264

Query: 359 VYKIGKVGQETHDASTEFDRTEKDITPMGGF 451
           + KIG  G E              ITP GGF
Sbjct: 265 ILKIGNNGDE--------------ITPKGGF 281

---

>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P|
          Length = 346

 Score =  112 bits (279), Expect = 6e-25
 Identities = 64/145 (44%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
 Frame = +2

Query: 23  GLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGV 202
           GLK KK  +ME  I G  +  K DY      KE+    V  + E++D+I VTKGKG +G 
Sbjct: 155 GLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGP 213

Query: 203 VTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 376
           V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  IG+
Sbjct: 214 VKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE 273

Query: 377 VGQETHDASTEFDRTEKDITPMGGF 451
            G+         D  E +ITP GGF
Sbjct: 274 NGK------LVLDGNEIEITPKGGF 292

---

>RL3_ARCFU (O28354) 50S ribosomal protein L3P|
          Length = 331

 Score =  108 bits (271), Expect = 5e-24
 Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
 Frame = +2

Query: 23  GLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGV 202
           G+ +K   +ME +I GG + + +DY  +   KE+ +  VF +  +ID+I VTKGKG++G 
Sbjct: 148 GVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGP 206

Query: 203 VTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 376
           V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ KIG+
Sbjct: 207 VKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGE 266

Query: 377 VGQETHDASTEFDRTEKDITPMGGF 451
            G+E              ITP GGF
Sbjct: 267 NGEE--------------ITPKGGF 277

---

>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P|
          Length = 351

 Score =  102 bits (254), Expect = 4e-22
 Identities = 61/149 (40%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
 Frame = +2

Query: 11  RKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 190
           RK+  L +K   L+EIQI GG    ++DY  N   KE+ I  VF++ ++ID++GVTKGKG
Sbjct: 166 RKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKG 225

Query: 191 YEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
           + GV+ R+ V  LPR  K  +G RK+   G       SYT  + GQ G+H RTE NK++ 
Sbjct: 226 FAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRII 283

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           KIG                 K+I P GGF
Sbjct: 284 KIGD--------------EPKEINPAGGF 298

---

>RL3_NANEQ (P60458) 50S ribosomal protein L3P|
          Length = 321

 Score =  101 bits (252), Expect = 8e-22
 Identities = 48/115 (41%), Positives = 73/115 (63%)
 Frame = +2

Query: 32  QKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR 211
           +K   + +I I G  +  K++Y  +   KE+ I+ VF++ + +D+I VTKGKG++GV+ R
Sbjct: 147 KKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKR 206

Query: 212 WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 376
           + V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + KIG+
Sbjct: 207 FHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGE 261

---

>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P|
          Length = 342

 Score =  101 bits (252), Expect = 8e-22
 Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 2/127 (1%)
 Frame = +2

Query: 26  LKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVV 205
           L +K+  ++EIQI GG+I D+++YG +   K++P+  VF++ ++ DIIGVTKGKG++GV+
Sbjct: 162 LGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVI 221

Query: 206 TRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV 379
            R+ V   PR  K  +G RK+   G    +  SY V + GQ G+H RTE NK++ KIG  
Sbjct: 222 KRYSVVEFPRWHKHRKGSRKIGARGP-SISTPSY-VPQPGQLGFHRRTEYNKRIIKIGDN 279

Query: 380 GQETHDA 400
             E + A
Sbjct: 280 VNEINPA 286

---

>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)|
          Length = 337

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 4/126 (3%)
 Frame = +2

Query: 32  QKKAHLMEIQINGGTIADKVDYGYNFFEK--EVPIDAVFQKDEMIDIIGVTKGKGYEGVV 205
           +KK  +ME ++ GG+++D++D+  +  E   E  ++ +F+  E  D+ GVTKGKG +G V
Sbjct: 156 KKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPV 215

Query: 206 TRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV 379
            RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  IG+ 
Sbjct: 216 KRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEG 275

Query: 380 GQETHD 397
            + T D
Sbjct: 276 DEPTVD 281

---

>RL3_SULTO (Q975I1) 50S ribosomal protein L3P|
          Length = 343

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
 Frame = +2

Query: 26  LKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVV 205
           L +KK  ++E+Q+ GG I  +++Y  N   K + +  VF++ ++IDIIGVTKGKG++GVV
Sbjct: 163 LGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVV 222

Query: 206 TRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKV 379
            R+GV  LPR  K  +G RKV   G    +  SY V + GQ GYH RTE NK++ KI   
Sbjct: 223 KRYGVVELPRWHKHRKGSRKVGARGPSF-STPSY-VPQPGQMGYHRRTEYNKRILKISD- 279

Query: 380 GQETHDASTEFDRTEKDITPMGGF 451
                           +I P GGF
Sbjct: 280 -------------DPNEINPKGGF 290

---

>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P|
          Length = 338

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQING-GTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTK 181
           T+  + G+ +K   L+EI I G  ++ +++++  +   K V    VF   +++D+I VTK
Sbjct: 149 TQPHLSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTK 208

Query: 182 GKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNK 355
           GKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V +T  R GQ G+H RTE NK
Sbjct: 209 GKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNK 267

Query: 356 KVYKIGKVGQETHDASTEFDRTEKDITPMGGF 451
           ++ KIG+ G E              ITP  GF
Sbjct: 268 RLLKIGENGAE--------------ITPKSGF 285

---

>RL3_METTH (O26110) 50S ribosomal protein L3P|
          Length = 337

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
 Frame = +2

Query: 5   TRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKG 184
           T  ++  + +KK  + E  + G T  +K +Y      K+V    +F +   +D I VTKG
Sbjct: 145 TNPRLASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKG 204

Query: 185 KGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 358
           KG++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK+
Sbjct: 205 KGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQ 264

Query: 359 VYKIGKVGQETHDASTEFDRTEKD-ITPMGGF 451
           + KIG             D +E D + P GGF
Sbjct: 265 ILKIG-------------DASEADLVNPDGGF 283

---

>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P|
          Length = 337

 Score = 95.1 bits (235), Expect = 7e-20
 Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
 Frame = +2

Query: 11  RKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 190
           + + G+ +K   +ME  I+   +  K +Y        V +  VF+   ++D   +T GKG
Sbjct: 150 KSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKG 209

Query: 191 YEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            +G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ 
Sbjct: 210 TQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRIL 269

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           KIG  G+E              +TP GGF
Sbjct: 270 KIGSDGEE--------------VTPEGGF 284

---

>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P|
          Length = 334

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
 Frame = +2

Query: 23  GLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEV--PIDAVFQKDEMIDIIGVTKGKGYE 196
           G+ +K   +ME ++ GGT+AD++++  +  E         VF+  E  D  G+TKGKG +
Sbjct: 150 GVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQ 209

Query: 197 GVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  I
Sbjct: 210 GPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDI 269

Query: 371 GKVGQETHD 397
               + T D
Sbjct: 270 NDGDEPTPD 278

---

>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P|
          Length = 331

 Score = 93.2 bits (230), Expect = 3e-19
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
 Frame = +2

Query: 5   TRRK-MKGLKQKKAHLMEIQINGG-TIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVT 178
           TR K + G+  KK  + E++I GG ++ ++++Y  N   K++      +  + +D++ +T
Sbjct: 139 TRNKDVPGIPSKKPEIFELRIGGGNSVKERLEYAKNHLGKQITFTDFSKPGKFVDVVSIT 198

Query: 179 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 358
           KGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N +
Sbjct: 199 KGKGFTGHVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVR 258

Query: 359 VYKIG 373
           V K G
Sbjct: 259 VIKYG 263

---

>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P|
          Length = 344

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
 Frame = +2

Query: 23  GLKQKKAHLMEIQINGGTIADKV-DYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEG 199
           GL +KK  L+EI++ G +   K+ DY  +     + ++ VF++ +++D+I VTKGKG++G
Sbjct: 157 GLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQG 216

Query: 200 VVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 373
           V+ RWGV  LPR  K  +G R++      H     +   +AGQ G+H RTE NK++  I 
Sbjct: 217 VIKRWGVKELPRWHKHRKGSRRIGARS--HGRSTFWETPQAGQTGFHRRTEYNKRILMID 274

Query: 374 KVGQETHDASTEFDRTEKDITPMGGF 451
             G +              +TP GGF
Sbjct: 275 DDGYK--------------VTPAGGF 286

---

>RL3_METMA (Q8PV50) 50S ribosomal protein L3P|
          Length = 337

 Score = 91.7 bits (226), Expect = 8e-19
 Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
 Frame = +2

Query: 11  RKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKG 190
           + + G+ +K   +ME  I+   +  K +Y  +     V +  VF+   ++D   +T GKG
Sbjct: 150 KSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKG 209

Query: 191 YEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            +G V RWG+     K  R   LR++  +G+++P+RVS+ V + GQ GYH RTE NK++ 
Sbjct: 210 TQGPVKRWGIQLQKGKHSRQGSLRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRIL 269

Query: 365 KIGKVGQETHDASTEFDRTEKDITPMGGF 451
           KIG  G+E              +TP GGF
Sbjct: 270 KIGSDGEE--------------VTPEGGF 284

---

>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P|
          Length = 331

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
 Frame = +2

Query: 5   TRRK-MKGLKQKKAHLMEIQINGG-TIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVT 178
           TR K + G+  KK  + E++I GG ++ ++ +Y      K +  +   +  + +D++ VT
Sbjct: 139 TRNKDVPGIPSKKPEIFELRIGGGNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVT 198

Query: 179 KGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 358
           KGKG+ G V R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N +
Sbjct: 199 KGKGFTGHVQRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVR 258

Query: 359 VYKIGK 376
           V K  K
Sbjct: 259 VLKYSK 264

---

>RL3_CLOTE (Q890N9) 50S ribosomal protein L3|
          Length = 209

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHRGLRKVACIGAWH 283
           +E+ +D +F+  E ID+ G +KGKGY+G++ RW   R P     K HR +  +    A +
Sbjct: 95  QEIKVD-IFEAGEKIDVTGTSKGKGYQGIIKRWNAHRGPMSHGSKFHRAVGSMG--AASY 151

Query: 284 PARVSYTVARAGQNGYHHRTEMNKKVYK 367
           PAR       AG  G    T +N +V K
Sbjct: 152 PARTFKNKRMAGHMGNVKSTVLNLEVVK 179

---

>RL3_ENTFA (Q839G4) 50S ribosomal protein L3|
          Length = 209

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = +2

Query: 89  VDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVA 265
           V+ G     KE+ +D VFQ  +++D+ G TKGKG++G + R G +R P     R  R+  
Sbjct: 86  VELGEYEVGKEIKVD-VFQAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMSHGSRYHRRPG 144

Query: 266 CIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
            +G   P RV      AG+ G    T  N +V K+
Sbjct: 145 SMGPVAPNRVFKNKRLAGRMGGDRVTIQNLEVVKV 179

---

>RL3_CLOAB (Q97EH8) 50S ribosomal protein L3|
          Length = 209

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHRGLRKVACIGAWHPARVSYT 304
           +F   E +D+ GV+KGKG++G + RWG  R P     K HR +  +   G+  P+R   +
Sbjct: 101 IFAAGEKVDVSGVSKGKGFQGTIRRWGAHRGPMSHGSKFHRAVGSMG--GSSDPSRTFKS 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
               G  G+ + T +N +V K+
Sbjct: 159 KKMPGHMGHVNTTVLNVEVAKV 180

---

>RL3_PORGI (Q7MTL3) 50S ribosomal protein L3|
          Length = 205

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT---HRGLRKVACIGAW-HPARVSYTV 307
           F   + +D++G +KGKG++GVV R G   + + T   H  LR    +GA  +PA+V    
Sbjct: 100 FSDADFVDVVGTSKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGAVGACSYPAKVFKGT 159

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AGQ G    T  N +V K+
Sbjct: 160 RMAGQMGNERVTVQNLEVIKV 180

---

>RL3_BACST (P28600) 50S ribosomal protein L3|
          Length = 213

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPAR 292
           +EV +D +F + +++D+ G++KGKG++G + R G +R P     R  R+   +GA  P R
Sbjct: 95  QEVKVD-IFSEGDIVDVTGISKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGAIAPNR 153

Query: 293 VSYTVARAGQNGYHHRTEMNKKVYKI 370
           V  T    G+ G    T  N K+ K+
Sbjct: 154 VFKTKNLPGRMGGERVTIQNLKIVKV 179

---

>RL3_CHLTE (Q8KAH2) 50S ribosomal protein L3|
          Length = 209

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKE----VPIDAVFQKDEMIDII 169
           G R + K  K    H  +   N G I  +V       E E    VP+D VF++ + ++++
Sbjct: 53  GERDEKKVSKPLAGHYKKAGKNPGYILSEVSKSLIVGELEAGATVPVD-VFKEGDKVNVL 111

Query: 170 GVTKGKGYEGVVTR---WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHR 340
           GVTKGKG+ GVV R    G +R   ++ R     +  G+  P+R       AG+ G  ++
Sbjct: 112 GVTKGKGFAGVVKRHNFGGGSRTHGQSDRLRAPGSVGGSSDPSRTFKGTRMAGRMGGKNK 171

Query: 341 TEMNKKVYKI 370
           T  N  + K+
Sbjct: 172 TVQNLVIVKV 181

---

>RK3_CHLS6 (Q7XYP4) 50S ribosomal protein L3, chloroplast precursor|
          Length = 302

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHRGLRKVACIGAWH 283
           +++  + +F+  +++D+ G + GKG++G + RWG+ R P     K+HR    + C     
Sbjct: 183 QQLKAEELFEVGDLVDVSGTSSGKGFQGSIRRWGMKRGPMSHGSKSHRQHGSIGCSAT-- 240

Query: 284 PARVSYTVARAGQNGYHHRT 343
           P+RV   +  AG+ G   +T
Sbjct: 241 PSRVYKGLKMAGRMGNERKT 260

---

>RL3_BACTN (Q8A476) 50S ribosomal protein L3|
          Length = 205

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT---HRGLRKVACIGAW-HPARVSYT 304
           +F     +D++G +KGKG++GVV R G   + + T   H   RK   IGA  +PA+V   
Sbjct: 99  MFNDATFVDVVGTSKGKGFQGVVKRHGFGGVGQATHGQHNRARKPGSIGACSYPAKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
           +   GQ G    T  N +V K+
Sbjct: 159 MRMGGQLGGDRVTVQNLQVLKV 180

---

>RL3_BACCR (Q81J42) 50S ribosomal protein L3|
          Length = 210

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIGAWHPAR 292
           +EV +D VF   E++D+ G++KGKG++GV+ R G +R P     R  R+   +G   P R
Sbjct: 95  QEVKVD-VFATGEIVDVTGISKGKGFQGVIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNR 153

Query: 293 VSYTVARAGQNGYHHRTEMNKKVYKI 370
           V      AG+ G    T  N ++ ++
Sbjct: 154 VFKGKKLAGRMGGDQVTIQNLEIVQV 179

---

>RL3_BACAN (Q81VT0) 50S ribosomal protein L3|
          Length = 210

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIGAWHPAR 292
           +EV +D VF   E++D+ G++KGKG++GV+ R G +R P     R  R+   +G   P R
Sbjct: 95  QEVKVD-VFATGEIVDVTGISKGKGFQGVIKRHGQSRGPMSHGSRYHRRPGSMGPVAPNR 153

Query: 293 VSYTVARAGQNGYHHRTEMNKKVYKI 370
           V      AG+ G    T  N ++ ++
Sbjct: 154 VFKGKKLAGRMGGDQVTIQNLEIVQV 179

---

>RL3_BIFLO (Q8G417) 50S ribosomal protein L3|
          Length = 213

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
 Frame = +2

Query: 38  KAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWG 217
           + HL+E++ +     D+ + G     +E+  D +F++   +D+ G TKGKG+ G + RWG
Sbjct: 79  RRHLVEVRTDD---VDQFEAG-----QELAAD-LFEEGAEVDVTGTTKGKGFAGTIKRWG 129

Query: 218 VT--RLPRKTHRGLRKVACIGAW-HPARVSYTVARAGQNGYHHRTEMNKKV 361
               R    +H+  R+   +GA   P+R+      AG+ G+   T  N  V
Sbjct: 130 FKSYRRTHGSHKNERRPGSVGACATPSRILKGKRMAGRMGHVTATTQNLTV 180

---

>RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3|
          Length = 209

 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHRGLRKVACIGAWHP 286
           E+ +D  F+  + +D+ GV+KGKG++G + RW  +R P     K HR    +    A  P
Sbjct: 96  EIKVDT-FEIGDKVDVSGVSKGKGFQGTIKRWNASRGPMSHGSKFHRAPGSMG--AASDP 152

Query: 287 ARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           +R        G  G  + T +N +V KI
Sbjct: 153 SRTFKNKRMPGHMGAKNTTVLNLEVVKI 180

---

>RL3_LISMO (Q8Y440) 50S ribosomal protein L3|
          Length = 209

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARV 295
           EV +D VF + ++ID  GV+KGKG++GV+ R G +R P     R  R+   +G   P RV
Sbjct: 96  EVKVD-VFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRV 154

Query: 296 SYTVARAGQNGYHHRTEMNKKVYKI 370
                  G+ G    T  N ++ K+
Sbjct: 155 FKNKLLPGRMGGEQITIQNLEIVKV 179

---

>RL3_LISMF (Q71WE6) 50S ribosomal protein L3|
          Length = 209

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARV 295
           EV +D VF + ++ID  GV+KGKG++GV+ R G +R P     R  R+   +G   P RV
Sbjct: 96  EVKVD-VFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRV 154

Query: 296 SYTVARAGQNGYHHRTEMNKKVYKI 370
                  G+ G    T  N ++ K+
Sbjct: 155 FKNKLLPGRMGGEQITIQNLEIVKV 179

---

>RL3_LISIN (Q927K7) 50S ribosomal protein L3|
          Length = 209

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARV 295
           EV +D VF + ++ID  GV+KGKG++GV+ R G +R P     R  R+   +G   P RV
Sbjct: 96  EVKVD-VFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRV 154

Query: 296 SYTVARAGQNGYHHRTEMNKKVYKI 370
                  G+ G    T  N ++ K+
Sbjct: 155 FKNKLLPGRMGGEQITIQNLEIVKV 179

---

>RL3_AQUPY (Q9ZI50) 50S ribosomal protein L3|
          Length = 244

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIG 274
           +E+ +  VF+  +++D+ G++KG+G+ GV+ RW     PR   HR  R V  IG
Sbjct: 96  QELRVQDVFKPGDLVDVWGISKGRGFAGVMKRWDFAGFPRSHGHRYHRAVGAIG 149

---

>RL3_BACSU (P42920) 50S ribosomal protein L3 (BL3)|
          Length = 209

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIGAWHPAR 292
           +EV ++ +F   E++D+ GV+KGKG++G + R G +R P     R  R+   +G   P R
Sbjct: 95  QEVKVE-IFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNR 153

Query: 293 VSYTVARAGQNGYHHRTEMNKKVYKI 370
           V       G+ G    T  N ++ K+
Sbjct: 154 VFKGKLLPGRMGGEQITVQNLEIVKV 179

---

>RL3_TROWT (Q83FY6) 50S ribosomal protein L3|
          Length = 210

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGV--TRLPRKTHRGLRKVACIGAWH-PARVSYTV 307
           +FQ+ +++D++G +KGKG+ G + R           +HR  RK   +GA   P+RV    
Sbjct: 96  IFQEGQLVDVVGKSKGKGFSGTMKRHNFQGVSATHGSHRNHRKPGSVGASSTPSRVFKGT 155

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG+ G    T  N ++ KI
Sbjct: 156 RMAGRLGSSRVTVHNLRLVKI 176

---

>RL3_TROW8 (Q83I78) 50S ribosomal protein L3|
          Length = 210

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGV--TRLPRKTHRGLRKVACIGAWH-PARVSYTV 307
           +FQ+ +++D++G +KGKG+ G + R           +HR  RK   +GA   P+RV    
Sbjct: 96  IFQEGQLVDVVGKSKGKGFSGTMKRHNFQGVSATHGSHRNHRKPGSVGASSTPSRVFKGT 155

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG+ G    T  N ++ KI
Sbjct: 156 RMAGRLGSSRVTVHNLRLVKI 176

---

>RL3_THETN (Q8R7V4) 50S ribosomal protein L3|
          Length = 210

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHRGLRKVACIGA-WH 283
           E+ +D +F+  + +D+ G++KGKG+ GV+ R+G  R P     K H   R+V  +GA   
Sbjct: 96  EIKVD-IFKPGDRVDVTGISKGKGFAGVIKRYGARRGPMSHGSKYH---RRVGSMGATTD 151

Query: 284 PARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           P R        G+ G    T  N +V K+
Sbjct: 152 PGRTFKGKKMPGRMGSDRVTIQNLEVVKV 180

---

>RL3_STRP1 (Q9A1X4) 50S ribosomal protein L3|
          Length = 208

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G++KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGISKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N ++ ++
Sbjct: 160 GRMGGNRVTVQNLEIVQV 177

---

>RL3_OCEIH (Q8ETY2) 50S ribosomal protein L3|
          Length = 209

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +2

Query: 104 NFFE--KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACI 271
           N FE  +E+ +D +F+  E ID+ G +KGKG++GV+ R G  R P  TH     R    +
Sbjct: 89  NSFEVGQEIKVD-IFESGEKIDVTGTSKGKGFQGVIKRHGQQRGP-TTHGSHFHRAPGAM 146

Query: 272 GAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           G   P RV       G  G    T  N +V  +
Sbjct: 147 GVIDPMRVFKGKKLPGHMGSEQVTIQNLEVVSV 179

---

>RL3_THEMA (P38515) 50S ribosomal protein L3|
          Length = 207

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR----KTHRGLRKVACIGAWHPARVSYT 304
           VF+K E +D+ G TKG+G+ G + RWG +  P+    K HR L  V       PA++   
Sbjct: 97  VFEKGEYVDVTGWTKGRGFAGAMKRWGFSGGPKSHGSKFHRELGSVG--QHTEPAKIWKG 154

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
               G+ G    T  N +V  I
Sbjct: 155 KKMPGRYGNERVTVRNLQVVDI 176

---

>RM03_BOVIN (Q3ZBX6) Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3)|
          Length = 348

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVS 298
           A F+  + +D+   T GKG++GV+ RWG    P      KTH   R+   I     ARV 
Sbjct: 196 AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPGAISTGDVARVW 252

Query: 299 YTVARAGQNGYHHRTEMNKKVYKI 370
                 GQ G   RT    KV++I
Sbjct: 253 PGTKMPGQLGNVDRTAFGLKVWRI 276

---

>RL3_STRP8 (P60452) 50S ribosomal protein L3|
          Length = 208

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N ++ ++
Sbjct: 160 GRMGGNRVTVQNLEIVQV 177

---

>RL3_STRP6 (Q5XED5) 50S ribosomal protein L3|
          Length = 208

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N ++ ++
Sbjct: 160 GRMGGNRVTVQNLEIVQV 177

---

>RL3_STRP3 (P60451) 50S ribosomal protein L3|
          Length = 208

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N ++ ++
Sbjct: 160 GRMGGNRVTVQNLEIVQV 177

---

>RL3_STRA5 (Q8E2D1) 50S ribosomal protein L3|
          Length = 208

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N ++ ++
Sbjct: 160 GRMGGNRVTVQNLEIVQV 177

---

>RL3_STRA3 (Q8E7T8) 50S ribosomal protein L3|
          Length = 208

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKRLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N ++ ++
Sbjct: 160 GRMGGNRVTVQNLEIVQV 177

---

>RL3_AQUAE (O66431) 50S ribosomal protein L3|
          Length = 241

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIG 274
           +++ ++ VF+  +++D+ G++KG+G+ G + RW     P+   HR  R V  IG
Sbjct: 96  QQLKVEDVFKPGDLVDVWGISKGRGFAGAMKRWDFAGFPKSHGHRYHRAVGAIG 149

---

>RM03_HUMAN (P09001) Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3)|
          Length = 348

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVS 298
           A F+  + +D+   T GKG++GV+ RWG    P      KTH   R+   +      RV 
Sbjct: 196 AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPGAVATGDIGRVW 252

Query: 299 YTVARAGQNGYHHRTEMNKKVYKI 370
                 G+ G  +RTE   KV++I
Sbjct: 253 PGTKMPGKMGNIYRTEYGLKVWRI 276

---

>RM03_RAT (P18665) Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3)|
          Length = 347

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVS 298
           A F+  + +D+   T GKG++GV+ RWG    P      KTH   R+   I     ARV 
Sbjct: 196 AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPASHGQTKTH---RRPGAISTGDIARVW 252

Query: 299 YTVARAGQNGYHHRTEMNKKVYKI 370
                 G+ G  +RT    KV+++
Sbjct: 253 PGTKMPGKMGNQNRTVYGLKVWRV 276

---

>RM03_MOUSE (Q99N95) Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3)|
          Length = 348

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHRGLRKVACIGAWHPARVS 298
           A F+  + +D+   T GKG++GV+ RWG    P      KTH   R+   I     ARV 
Sbjct: 196 AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPASHGQTKTH---RRPGAISTGDIARVW 252

Query: 299 YTVARAGQNGYHHRTEMNKKVYKI 370
                 G+ G  +RT    KV+++
Sbjct: 253 PGTKMPGRMGNQNRTVYGLKVWRV 276

---

>RL3_STRMU (Q8DS16) 50S ribosomal protein L3|
          Length = 208

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F+  +++D+ G TKGKG++G + R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FEAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G +  T  N +V ++
Sbjct: 160 GRMGGNRVTVQNLEVVQV 177

---

>RL3_CORDI (P60453) 50S ribosomal protein L3|
          Length = 218

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVT--RLPRKTHRGLRKVACIGAW-HPARVSYTV 307
           +F+    +D+ G TKGKGY G + R G              R+V  IGA   P RV    
Sbjct: 105 IFEGINFVDVTGTTKGKGYAGAMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGRVFKGT 164

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG+ G    T  N KV KI
Sbjct: 165 RMAGRMGSDRVTTQNLKVQKI 185

---

>RL3_BACHD (Q9Z9L4) 50S ribosomal protein L3|
          Length = 209

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIGAWHPAR 292
           +E+ +DA F + +++D+ G +KGKG+ G + R    R P     R  R+   +G   P R
Sbjct: 95  QEIKVDA-FAEGDIVDVTGTSKGKGFAGAIKRHNQARGPMSHGSRYHRRPGSMGPVDPNR 153

Query: 293 VSYTVARAGQNGYHHRTEMNKKVYKI 370
           V    A  G+ G    T  N ++ K+
Sbjct: 154 VFKGKALPGRMGGEQVTVQNLEIIKV 179

---

>RL3_LEPIN (Q9XD36) 50S ribosomal protein L3|
          Length = 206

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 128 IDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGA-WHPARVSY 301
           I  VF   +++ + GV+KG+GY+GVV R G    P     R  R    +GA   P+RV  
Sbjct: 98  IQDVFAVSDVVKVTGVSKGRGYQGVVKRHGHAGGPGAHGSRFHRHPGSMGANSTPSRVFK 157

Query: 302 TVARAGQNGYHHRTEMNKKVYKIGK 376
            V   G+ G    T  N KV +I +
Sbjct: 158 GVKLPGRTGSQKTTVRNLKVVRINE 182

---

>RL3_LEPIC (Q72NG1) 50S ribosomal protein L3|
          Length = 206

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +2

Query: 128 IDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGA-WHPARVSY 301
           I  VF   +++ + GV+KG+GY+GVV R G    P     R  R    +GA   P+RV  
Sbjct: 98  IQDVFAVSDVVKVTGVSKGRGYQGVVKRHGHAGGPGAHGSRFHRHPGSMGANSTPSRVFK 157

Query: 302 TVARAGQNGYHHRTEMNKKVYKIGK 376
            V   G+ G    T  N KV +I +
Sbjct: 158 GVKLPGRTGSQKTTVRNLKVVRINE 182

---

>RL3_GEOSL (P60454) 50S ribosomal protein L3|
          Length = 210

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
 Frame = +2

Query: 41  AHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 220
           AH+ E ++      D VD  YN  +  +  DA F+  E ID+ G + GKG++GV+ RWG 
Sbjct: 78  AHIREFRL------DDVDR-YNVGDV-ISADA-FEVGEYIDVTGTSIGKGFQGVIKRWGF 128

Query: 221 TRLPRKTHRGL--RKVACIG-AWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
            R  R +H     R    IG + +P+RV       GQ G    T    +V ++
Sbjct: 129 -RGGRSSHGSCFHRAPGSIGSSAYPSRVFKNKKMPGQLGNERVTVQRLQVVRV 180

---

>RL3_BORPE (Q7VTD3) 50S ribosomal protein L3|
          Length = 233

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIA-----DKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
           GTRR  + +K +  H  +     G+I      D            + +++VF+  + +D+
Sbjct: 68  GTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARAAEFAAGAVIAVESVFEAGQQVDV 127

Query: 167 IGVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYTVARAGQNGYHH 337
            G + GKG+ G + R  +G  R      R  R    IG A  P R+      +G  G   
Sbjct: 128 TGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRMSGHMGDVT 187

Query: 338 RTEMNKKVYKI 370
           RT  N  V ++
Sbjct: 188 RTVQNLDVVRV 198

---

>RL3_BORPA (Q7W2F6) 50S ribosomal protein L3|
          Length = 233

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIA-----DKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
           GTRR  + +K +  H  +     G+I      D            + +++VF+  + +D+
Sbjct: 68  GTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARAAEFAAGAVIAVESVFEAGQQVDV 127

Query: 167 IGVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYTVARAGQNGYHH 337
            G + GKG+ G + R  +G  R      R  R    IG A  P R+      +G  G   
Sbjct: 128 TGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRMSGHMGDVT 187

Query: 338 RTEMNKKVYKI 370
           RT  N  V ++
Sbjct: 188 RTVQNLDVVRV 198

---

>RL3_BORBR (Q7WRC5) 50S ribosomal protein L3|
          Length = 233

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIA-----DKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
           GTRR  + +K +  H  +     G+I      D            + +++VF+  + +D+
Sbjct: 68  GTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARAAEFAAGAVIAVESVFEAGQQVDV 127

Query: 167 IGVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYTVARAGQNGYHH 337
            G + GKG+ G + R  +G  R      R  R    IG A  P R+      +G  G   
Sbjct: 128 TGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRMSGHMGDVT 187

Query: 338 RTEMNKKVYKI 370
           RT  N  V ++
Sbjct: 188 RTVQNLDVVRV 198

---

>RK3_GUITH (O46894) Chloroplast 50S ribosomal protein L3|
          Length = 204

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = +2

Query: 86  KVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRK 259
           KVD  + F   +    ++F+  +++ + GV+ GKG+ G V R   TR P  TH  +  R+
Sbjct: 84  KVDATHTFTIAQQLDVSIFELGQIVSVSGVSIGKGFAGTVKRHNFTRGP-MTHGSKNHRE 142

Query: 260 VACIGAWH-PARVSYTVARAGQNGYHHRTEMNKKVYKIGK 376
              IG    PA+V      AG+ G H  T  N  V  + K
Sbjct: 143 PGSIGQGSTPAKVHKGKKMAGRLGGHQVTTKNLTVVHLDK 182

---

>RL3_THETH (P52860) 50S ribosomal protein L3|
          Length = 206

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP--RKTHRGLRKVACIG-AWHPARVSYTV 307
           +F+  E +D+ G +KG+G+ GV+ RW     P     H+  R    IG    P RV    
Sbjct: 95  IFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG  G    T MN +V  +
Sbjct: 155 KMAGHYGAERVTVMNLEVVDV 175

---

>RL3_THET8 (Q5SHN8) 50S ribosomal protein L3|
          Length = 206

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP--RKTHRGLRKVACIG-AWHPARVSYTV 307
           +F+  E +D+ G +KG+G+ GV+ RW     P     H+  R    IG    P RV    
Sbjct: 95  IFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG  G    T MN +V  +
Sbjct: 155 KMAGHYGAERVTVMNLEVVDV 175

---

>RL3_STRR6 (Q8CWV8) 50S ribosomal protein L3|
          Length = 208

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F   +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FAAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G    T  N +V ++
Sbjct: 160 GRMGGDRVTIQNLEVVQV 177

---

>RL3_STRPN (Q97SV5) 50S ribosomal protein L3|
          Length = 208

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVSYTVARA 316
           F   +++D+ G +KGKG++GV+ R G +R P     R  R+   +G   P RV      A
Sbjct: 100 FAAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKGKNLA 159

Query: 317 GQNGYHHRTEMNKKVYKI 370
           G+ G    T  N +V ++
Sbjct: 160 GRMGGDRVTIQNLEVVQV 177

---

>RL3_CORGL (Q8NT09) 50S ribosomal protein L3|
          Length = 218

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVT--RLPRKTHRGLRKVACIG-AWHPARVSYTV 307
           +F   + +D+ G TKGKGY G + R G              R+V  IG A  P R+    
Sbjct: 105 IFNDIKFVDVTGTTKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGK 164

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG+ G    T  N KV KI
Sbjct: 165 RMAGRMGNDRVTTQNLKVQKI 185

---

>RK3B_ARATH (Q9LRN8) 50S ribosomal protein L3-2, chloroplast precursor|
          Length = 324

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-----THRGLRKVACIGAWHPARVSYT 304
           F   + +D+ G+T+GKG++G + R G + +P       +HR         A  P +V   
Sbjct: 176 FVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDA--PGKVFKG 233

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AG+ G   RT  N  VYKI
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKI 255

---

>RL3_DEIRA (Q9RXK2) 50S ribosomal protein L3|
          Length = 211

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-----RKTHR-----GLRKVACIGAWHP 286
           +F + E ID  G +KGKG +GV+ RW     P     +K HR     G RK        P
Sbjct: 95  IFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKT-------P 147

Query: 287 ARVSYTVARAGQNGYHHRTEMNKKVYKI 370
            RV      AG  G    T  N +V +I
Sbjct: 148 GRVYKGKRMAGHMGMERVTVQNLEVVEI 175

---

>RL3_NEIMB (P60444) 50S ribosomal protein L3|
          Length = 214

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYT 304
           ++F+  +++D+ G +KGKG+ G + R  +G  R      R  R    IG A  P RV   
Sbjct: 102 SMFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPG 161

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T    +V ++
Sbjct: 162 KRMAGQYGNTKATVQKLEVVRV 183

---

>RL3_NEIMA (P60443) 50S ribosomal protein L3|
          Length = 214

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYT 304
           ++F+  +++D+ G +KGKG+ G + R  +G  R      R  R    IG A  P RV   
Sbjct: 102 SMFEVGQLVDVTGTSKGKGFSGTIKRHNFGAQRTSHGNSRSHRVPGSIGMAQDPGRVFPG 161

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T    +V ++
Sbjct: 162 KRMAGQYGNTKATVQKLEVVRV 183

---

>RK3_TOBAC (O80360) 50S ribosomal protein L3, chloroplast precursor (Fragment)|
          Length = 259

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
 Frame = +2

Query: 44  HLMEIQ---INGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW 214
           HL E +   I+G  +  K+D+G            +F++ +++D+ G T GKG++G + R 
Sbjct: 121 HLQEFRLQSIDGFEVTQKLDFG-----------ELFKEGDLVDVSGTTIGKGFQGGIKRH 169

Query: 215 GVTRLPRKTH--RGLRKVACIGA-WHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
              R  + TH  +  R++  IGA   P RV       G+ G   R     K+ KI
Sbjct: 170 NFKR-GQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKI 223

---

>RL3_VIBVY (Q7MPI8) 50S ribosomal protein L3|
          Length = 209

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLME--IQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGV 175
           GT++  +  K +  H  +  ++   G    +++ G  F         +F + + +D+ G 
Sbjct: 53  GTKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGT 112

Query: 176 TKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGAWH-PARVSYTVARAGQNGYHHRT 343
           +KGKG++G V RW   R    TH      R    IG    P RV      AG  G    T
Sbjct: 113 SKGKGFQGTVKRWNF-RTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVT 171

Query: 344 EMNKKVYKI 370
             N ++ ++
Sbjct: 172 TQNLEIVRV 180

---

>RL3_VIBVU (Q8DE39) 50S ribosomal protein L3|
          Length = 209

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLME--IQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGV 175
           GT++  +  K +  H  +  ++   G    +++ G  F         +F + + +D+ G 
Sbjct: 53  GTKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGT 112

Query: 176 TKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGAWH-PARVSYTVARAGQNGYHHRT 343
           +KGKG++G V RW   R    TH      R    IG    P RV      AG  G    T
Sbjct: 113 SKGKGFQGTVKRWNF-RTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVT 171

Query: 344 EMNKKVYKI 370
             N ++ ++
Sbjct: 172 TQNLEIVRV 180

---

>RL3_PSEAE (Q9HWD5) 50S ribosomal protein L3|
          Length = 211

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEK--EVPIDAVFQKDEMIDIIGV 175
           G RR  +  K +  H  +  +  G    +   G   +    ++ +D +FQ  +M+D+ G 
Sbjct: 54  GERRASRVTKAQAGHFAKANVAAGRGVWEFRLGEEQYAAGDQITVD-LFQAGQMVDVTGE 112

Query: 176 TKGKGYEGVVTRW 214
           +KGKG+ G + RW
Sbjct: 113 SKGKGFAGTIKRW 125

---

>RL3_SPIKU (P60457) 50S ribosomal protein L3|
          Length = 258

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL-RKVACIGAWHPARVSYTVAR 313
           +F   E +D+ G +KGKG+ G + R   +R P     G  R V  +GA  P R+  +   
Sbjct: 98  IFTAGEFVDVTGTSKGKGFTGSIKRHNYSRGPMGHGSGYHRGVGSMGAIAPNRILKSKKM 157

Query: 314 AGQNGYHHRTEMNKKVYKI 370
            G  G    T  N ++  I
Sbjct: 158 PGHIGTEKVTIQNLEIIAI 176

---

>RL3_STAES (Q8CRG0) 50S ribosomal protein L3|
          Length = 220

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F+  ++ID+ GV+KGKG++G + R G  R P
Sbjct: 103 QEVSVDT-FETGDIIDVTGVSKGKGFQGAIKRHGQGRGP 140

---

>RL3_STAEQ (Q5HLZ9) 50S ribosomal protein L3|
          Length = 220

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F+  ++ID+ GV+KGKG++G + R G  R P
Sbjct: 103 QEVSVDT-FETGDIIDVTGVSKGKGFQGAIKRHGQGRGP 140

---

>RL3_XYLFA (Q9PE76) 50S ribosomal protein L3|
          Length = 215

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGT-----IADKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
           G+RR +   K +  H  + ++  G        +K   G      EV + ++F   + +DI
Sbjct: 57  GSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGL-SIFAVGQKVDI 115

Query: 167 IGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYTVARAGQNGYH 334
            G+TKGKG++G + R    R+   TH         G+      P RV      +G  G  
Sbjct: 116 QGITKGKGFQGTIKRHNF-RMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAV 174

Query: 335 HRTEMNKKVYKI 370
            ++  N +V KI
Sbjct: 175 RQSVQNLEVVKI 186

---

>RL3_WIGBR (Q8D212) 50S ribosomal protein L3|
          Length = 215

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
 Frame = +2

Query: 53  EIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           ++++  G    KVD    F+  +V     F     ++I G++KGKG+ G + RW      
Sbjct: 72  KVELGRGLWEFKVDKNSKFYVGQVLSINTFININKVNITGISKGKGFSGTMKRWNFHGQD 131

Query: 233 RKTHRGL--RKVACIGA-WHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
                 L  R    IG    P +V      +G  GY+  T  N  V KI
Sbjct: 132 ASHGNSLSHRAPGSIGQNQTPGKVFKGKKMSGHLGYNKNTVKNLFVVKI 180

---

>RL3_VIBPA (Q87T13) 50S ribosomal protein L3|
          Length = 209

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGAWH-PARVSYT 304
           +F + + +D+ G +KGKG++G V RW   R    TH      R    IG    P RV   
Sbjct: 100 LFNETKKVDVTGTSKGKGFQGAVKRWNF-RTQDMTHGNSLSHRAPGSIGQCQTPGRVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AG  G    T  N ++ ++
Sbjct: 159 KKMAGHMGAERVTTQNLEIVRV 180

---

>RL3_VIBCH (Q9KNY4) 50S ribosomal protein L3|
          Length = 209

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLME--IQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGV 175
           G+++  +  K +  H  +  ++   G    +++ G  F         +F + + +D+ G 
Sbjct: 53  GSKKANRVTKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVELFNEVKKVDVTGT 112

Query: 176 TKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGAWH-PARVSYTVARAGQNGYHHRT 343
           +KGKG++G V RW   R    TH      R    IG    P RV      AG  G    T
Sbjct: 113 SKGKGFQGAVKRWNF-RTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVT 171

Query: 344 EMNKKVYKI 370
             N ++ ++
Sbjct: 172 TQNLEIVRV 180

---

>RL3_COREF (Q8FS80) 50S ribosomal protein L3|
          Length = 218

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVT--RLPRKTHRGLRKVACIG-AWHPARVSYTV 307
           +F   + +D+ G +KGKGY G + R G              R+V  IG A  P R+    
Sbjct: 105 IFNDVKFVDVTGTSKGKGYAGAMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGRIFKGK 164

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG+ G    T  N KV KI
Sbjct: 165 RMAGRMGNDRVTTQNLKVQKI 185

---

>RL3_XYLFT (Q87E82) 50S ribosomal protein L3|
          Length = 215

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGT-----IADKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
           G+RR +   K +  H  + ++  G        +K   G      EV + ++F   + +DI
Sbjct: 57  GSRRSVLVNKPESGHFAKAKVEAGRGLWEFRVEKTQLGSYSVGSEVGL-SIFAVGQKVDI 115

Query: 167 IGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYTVARAGQNGYH 334
            G+TKGKG++G + R    R+   TH         G+      P RV      +G  G  
Sbjct: 116 QGITKGKGFQGTIKRHNF-RMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSGHMGAV 174

Query: 335 HRTEMNKKVYKI 370
            ++  N +V KI
Sbjct: 175 KQSVQNLEVIKI 186

---

>RL3_STAAC (Q5HDV8) 50S ribosomal protein L3|
          Length = 209

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F   ++ID+ GV+KGKG++G + R G +R P
Sbjct: 92  QEVSVDT-FVAGDVIDVTGVSKGKGFQGAIKRHGQSRGP 129

---

>RL3_STAAW (P60450) 50S ribosomal protein L3|
          Length = 220

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F   ++ID+ GV+KGKG++G + R G +R P
Sbjct: 103 QEVSVDT-FVAGDVIDVTGVSKGKGFQGAIKRHGQSRGP 140

---

>RL3_STAAS (Q6G771) 50S ribosomal protein L3|
          Length = 220

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F   ++ID+ GV+KGKG++G + R G +R P
Sbjct: 103 QEVSVDT-FVAGDVIDVTGVSKGKGFQGAIKRHGQSRGP 140

---

>RL3_STAAR (Q6GEI3) 50S ribosomal protein L3|
          Length = 220

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F   ++ID+ GV+KGKG++G + R G +R P
Sbjct: 103 QEVSVDT-FVAGDVIDVTGVSKGKGFQGAIKRHGQSRGP 140

---

>RL3_STAAN (P60449) 50S ribosomal protein L3|
          Length = 220

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F   ++ID+ GV+KGKG++G + R G +R P
Sbjct: 103 QEVSVDT-FVAGDVIDVTGVSKGKGFQGAIKRHGQSRGP 140

---

>RL3_STAAM (P60448) 50S ribosomal protein L3|
          Length = 220

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F   ++ID+ GV+KGKG++G + R G +R P
Sbjct: 103 QEVSVDT-FVAGDVIDVTGVSKGKGFQGAIKRHGQSRGP 140

---

>RL3_RALSO (Q8XV12) 50S ribosomal protein L3|
          Length = 220

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 37/131 (28%), Positives = 50/131 (38%), Gaps = 8/131 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIA-----DKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
           GTRR  +  K    HL +  +  G I      D            + +D +F  D+ ID+
Sbjct: 54  GTRRASRVTKPLAGHLAKAGVEAGEIIVEFRIDATKAAELKLGDTIDVD-LFSVDQKIDV 112

Query: 167 IGVTKGKGYEGVVTRWGVT--RLPRKTHRGLRKVACIG-AWHPARVSYTVARAGQNGYHH 337
            G T GKGY G + R+  +  R      R       IG A  P RV       G  G   
Sbjct: 113 QGTTIGKGYAGTIKRYHFSSGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHMGDVT 172

Query: 338 RTEMNKKVYKI 370
           RT  N  + +I
Sbjct: 173 RTVQNLVIVRI 183

---

>RL3_BUCBP (Q89A68) 50S ribosomal protein L3|
          Length = 214

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGA-WHPARVSYTV 307
           +F   + +DIIG +KGKG+ G V RW            L  R    IG    P RV    
Sbjct: 102 LFSNIKKVDIIGTSKGKGFCGTVKRWNFHTQDATHGNSLSHRAPGSIGQNQTPGRVFKGK 161

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG  G H  T  N  + KI
Sbjct: 162 KMAGHLGNHRVTVQNLDIVKI 182

---

>RL3_STAHJ (Q4L8B4) 50S ribosomal protein L3|
          Length = 220

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV +D  F+  ++ID+ G +KGKG++G + R G  R P
Sbjct: 103 QEVTVDT-FEAGDIIDVTGTSKGKGFQGAIKRHGQARGP 140

---

>RM03_CAEEL (P49404) Putative mitochondrial 39S ribosomal protein L3|
          Length = 403

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +2

Query: 125 PIDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARVS 298
           P+DA  F   + +   G T   G++G + RWG+   P R+T +  R++  +G+   AR+ 
Sbjct: 212 PLDARHFGVGQYVTATGKTIDWGFQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIW 271

Query: 299 YTVARAGQNGYHHRTEMNKKVYKI 370
                 G  GY  RT    ++ +I
Sbjct: 272 PGKRMPGHMGYEWRTVSGLEIVRI 295

---

>RL3_MYCTU (P60442) 50S ribosomal protein L3|
          Length = 217

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
 Frame = +2

Query: 38  KAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR-- 211
           + +L E++++    A +   G     +      +F     +D+ G +KGKG+ G + R  
Sbjct: 78  RRYLAELRLDDSDAATEYQVGQELTAE------IFADGSYVDVTGTSKGKGFAGTMKRHG 131

Query: 212 ---WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
               G +   +  HR  R  +  G   PARV      AG+ G    T +N  V+K+
Sbjct: 132 FRGQGASHGAQAVHR--RPGSIGGCATPARVFKGTRMAGRMGNDRVTVLNLLVHKV 185

---

>RL3_MYCBO (P60441) 50S ribosomal protein L3|
          Length = 217

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
 Frame = +2

Query: 38  KAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR-- 211
           + +L E++++    A +   G     +      +F     +D+ G +KGKG+ G + R  
Sbjct: 78  RRYLAELRLDDSDAATEYQVGQELTAE------IFADGSYVDVTGTSKGKGFAGTMKRHG 131

Query: 212 ---WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
               G +   +  HR  R  +  G   PARV      AG+ G    T +N  V+K+
Sbjct: 132 FRGQGASHGAQAVHR--RPGSIGGCATPARVFKGTRMAGRMGNDRVTVLNLLVHKV 185

---

>RL3_BUCAP (Q8K950) 50S ribosomal protein L3|
          Length = 209

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G++KGKG+ G V RW   R    TH      R    IG    P RV   
Sbjct: 100 IFNDIKKVDVTGISKGKGFSGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGRVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AG  G +  T  N  + KI
Sbjct: 159 KKMAGHLGNNRVTVQNLNIVKI 180

---

>RL3_NITEU (Q82X88) 50S ribosomal protein L3|
          Length = 215

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIAD--KVDYGYNFFEK---EVPIDAVFQKDEMIDI 166
           G RRK +  K    H  +  +  GT+    +VD+      K   E+ ++ +F+    +D+
Sbjct: 54  GYRRKNRITKALSGHFSQAGVEAGTVIKEFRVDHDIGSDIKIGSEISVE-LFEVGSKVDV 112

Query: 167 IGVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYTVARAGQNGYHH 337
            G++ GKGY G + R  +  +R      R       IG A  P RV       G  G   
Sbjct: 113 CGISIGKGYAGTIKRHNFSSSRASHGNSRSHNVPGSIGMAQDPGRVFPGKKMTGHLGNAQ 172

Query: 338 RTEMNKKVYKI 370
            T  N +V ++
Sbjct: 173 CTVQNIEVVRV 183

---

>RL3_TREPA (O83219) 50S ribosomal protein L3|
          Length = 208

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIG-AWHPARVSYTV 307
           V +    +D+  ++KGKG++GVV RWG +   R +H  +  R+    G    P R    V
Sbjct: 98  VLESVRYLDVCALSKGKGFQGVVKRWGFSG-GRSSHGSKFHREAGSTGQCTSPGRTFKNV 156

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
              G+ G    T  N ++ +I
Sbjct: 157 KMPGRMGAERVTVQNLRIERI 177

---

>RL3_MYCGA (O52332) 50S ribosomal protein L3|
          Length = 236

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 22/77 (28%), Positives = 40/77 (51%)
 Frame = +2

Query: 128 IDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 307
           ++ +FQ+ +++D+   TKG+G+ G + RW   ++  K H         GA +P R   +V
Sbjct: 96  VEELFQEGQVVDVQARTKGRGFTGAIKRWNF-KIGSKGH---------GAGYPHRFQGSV 145

Query: 308 ARAGQNGYHHRTEMNKK 358
            +AG+ G   +  M  K
Sbjct: 146 -QAGRGGSQAQRVMKGK 161

---

>RL3_BORBU (P94267) 50S ribosomal protein L3|
          Length = 206

 Score = 36.6 bits (83), Expect = 0.030
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
 Frame = +2

Query: 20  KGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEG 199
           K +K +   L +I+     I  K   GY+  + E+ +D VF+  + +D+ G TKGKG++G
Sbjct: 62  KPIKGQYKSLKDIEPKRYVIELKGLDGYDAGD-EIKVD-VFKSVKYVDVTGTTKGKGFQG 119

Query: 200 VVTRWGVTRLP----RKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYK 367
            + R   +  P     K HR L       A  PAR       AG+   + +T  N +V  
Sbjct: 120 AMKRHNFSGGPSSHGSKFHRHLGGTG--QATTPARTFKGTKMAGRMAGNQQTIQNLEVVL 177

Query: 368 I 370
           I
Sbjct: 178 I 178

---

>RL3_FUSNN (Q8RIF5) 50S ribosomal protein L3|
          Length = 211

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT--RLPRKTHRGLRKVACIG--AWH 283
           +E+ +D V  +   +DI G +KGKG  GV+ + G +  R      R  R    IG  +W 
Sbjct: 93  QEIKVD-VLTEVGYVDITGTSKGKGTSGVMKKHGFSGNRASHGVSRNHRLGGSIGMSSW- 150

Query: 284 PARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           P +V      AGQ+G    T  N KV K+
Sbjct: 151 PGKVLKGKKMAGQHGNATVTVQNLKVVKV 179

---

>RL3_BLOFL (Q7VQE8) 50S ribosomal protein L3|
          Length = 219

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
 Frame = +2

Query: 29  KQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEM-----IDIIGVTKGKGY 193
           K K  HL ++ IN G      ++  N   + + +  +F    +     +D+ G++KGKG+
Sbjct: 62  KPKLGHLKKLGINYGK--GLWEFRLNDSNRLISVGDIFTLKVLKCINKVDVTGISKGKGF 119

Query: 194 EGVVTRWGVTRLPRKTHRGL--RKVACIGA-WHPARVSYTVARAGQNGYHHRTEMNKKVY 364
            G V RW            L  R    IG    P +V      AG  GY   T  N  V 
Sbjct: 120 AGAVKRWNFRTQDASHGNSLSHRAPGSIGQNQTPGKVFKGKKMAGHLGYEKATIQNLAVI 179

Query: 365 KI 370
            I
Sbjct: 180 NI 181

---

>RL3_HAEDU (Q7VKD2) 50S ribosomal protein L3|
          Length = 208

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGT-IADKVDYGYNF-FEKEVPIDAVFQKDEMIDIIGV 175
           GT++  +  K +  H ++  +  G  + +    G  F   +E+ +D +F   + +D+ G 
Sbjct: 53  GTKKASRVTKPEAGHFVKAGVEAGRGLWEFRTEGEEFTLGQEINVD-IFADVKKVDVTGT 111

Query: 176 TKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYTVARAGQNGYHHRT 343
           +KGKG+ G V RW   R    TH        +G+      P RV      AG  G    T
Sbjct: 112 SKGKGFAGGVKRWNF-RTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGAERVT 170

Query: 344 EMNKKVYKI 370
             + +V ++
Sbjct: 171 VQSLEVVRV 179

---

>RL3_LACPL (Q88XY6) 50S ribosomal protein L3|
          Length = 209

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIGAWHPARV 295
           EV  D +F   + +D+ G+TKG GY+G + + G +R P     R  R+   +GA    RV
Sbjct: 97  EVKAD-IFAAGDAVDVTGITKGHGYQGNIHKDGQSRGPMAHGSRYHRRPGSMGA-IINRV 154

Query: 296 SYTVARAGQNGYHHRTEMNKKVYK 367
                  G+ G H RT  N ++ +
Sbjct: 155 FKGKKLPGRMGNHQRTMQNLQIVR 178

---

>RK3A_ARATH (Q9SKX4) 50S ribosomal protein L3-1, chloroplast precursor|
          Length = 271

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW----GVTRLPRKTHRGLRKVACIGAWH 283
           +++  D +F++ +++D+ G T GKG++G + R     G      K+HR L  +       
Sbjct: 149 QKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIG--AGTT 206

Query: 284 PARVSYTVARAGQNGYHHRTEMNK-KVYKIGK 376
           P RV       G+ G   RT++ K K+ K+ K
Sbjct: 207 PGRVYKGKKMPGRMG-GTRTKIRKLKIVKVDK 237

---

>RL3_MYCLE (P30762) 50S ribosomal protein L3|
          Length = 217

 Score = 35.8 bits (81), Expect = 0.052
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
 Frame = +2

Query: 38  KAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR-- 211
           + +L E++++    A + + G      E+  DA +     +D+ G +KGKG+ G + R  
Sbjct: 78  RRYLAELRLDHPDAAAEYEVGQEL-TAEIFADATY-----VDVTGTSKGKGFSGTMKRHG 131

Query: 212 ---WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
               G +   +  HR  R  +  G   PARV      AG+ G    T  N  V+K+
Sbjct: 132 FRGQGASHGAQAVHR--RPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVHKV 185

---

>RL3_HAEIN (P44344) 50S ribosomal protein L3|
          Length = 208

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGT-IADKVDYGYNF-FEKEVPIDAVFQKDEMIDIIGV 175
           G+++  +  K +  H ++  +  G  + +    G  F   +E+ +D +F   + +D+ G 
Sbjct: 53  GSKKANRVTKPEAGHFVKAGVEAGRGLWEFRTEGEEFTLGQEINVD-IFADVKKVDVTGT 111

Query: 176 TKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYTVARAGQNGYHHRT 343
           +KGKG++G V RW   R    TH        +G+      P RV      AG  G    T
Sbjct: 112 SKGKGFQGGVKRWNF-RTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGAERVT 170

Query: 344 EMNKKVYKI 370
             + +V ++
Sbjct: 171 VQSLEVVRV 179

---

>RM09_YEAST (P31334) 60S ribosomal protein L9, mitochondrial precursor (YmL9)|
          Length = 269

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAW----HPARVSYTV 307
           F++ + +D+  V+KGKG+ GV+ R+G   L R +H         G++     P RV    
Sbjct: 160 FKEGQYVDVRSVSKGKGFTGVMKRYGFKGL-RASHGTSIMHRHGGSYGQNQDPGRVLPGR 218

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
              G  G  H T  N KV K+
Sbjct: 219 KMPGHMGNEHVTIQNVKVLKV 239

---

>RL3_PSESM (Q889X1) 50S ribosomal protein L3|
          Length = 211

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDA-VFQKDEMIDIIGVT 178
           G RR  +    +  H  +  +  G    +       ++    I+A +F   +++D+ G +
Sbjct: 54  GERRASRVTAAQAGHFAKANVAAGRTVMEFRLEEGEYQAGDQINAEIFAAGQLVDVTGQS 113

Query: 179 KGKGYEGVVTRW 214
           KGKG++G + RW
Sbjct: 114 KGKGFQGTIKRW 125

---

>RL3_MYCCT (P10134) 50S ribosomal protein L3|
          Length = 223

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = +2

Query: 122 VPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK----THRGLRKVACIGAWHPA 289
           + +  +F   E +D+ G++KGKG+ G + R   +R P       HRG+  +  I      
Sbjct: 94  INVSDIFVSGEYVDVTGISKGKGFAGGIKRHNYSRGPMAHGSGYHRGIGSMGAI----IN 149

Query: 290 RVSYTVARAGQNGYHHRTEMNKKVYKI 370
           R+  +    G  G   RT  N ++  I
Sbjct: 150 RIFKSKKMPGHMGNAKRTIQNLEIIAI 176

---

>RL3_XANCP (Q8PC49) 50S ribosomal protein L3|
          Length = 216

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYT 304
           +F+  + +D+ GVTKGKG++G + R+   R+   TH         G+      P RV   
Sbjct: 107 IFEVGQKVDVQGVTKGKGFQGTIKRYNF-RMGDATHGNSLSHRAPGSLGQRQTPGRVFPG 165

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              +G  G   ++  N +V K+
Sbjct: 166 KKMSGHMGAVQQSTQNLEVVKV 187

---

>RL3_XANAC (Q8PNS4) 50S ribosomal protein L3|
          Length = 216

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYT 304
           +F+  + +D+ GVTKGKG++G + R+   R+   TH         G+      P RV   
Sbjct: 107 IFEVGQKVDVQGVTKGKGFQGTIKRYNF-RMGDATHGNSLSHRAPGSLGQRQTPGRVFPG 165

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              +G  G   ++  N +V K+
Sbjct: 166 KKMSGHMGAVQQSTQNLEVVKV 187

---

>RL3_COXBU (Q83ES4) 50S ribosomal protein L3|
          Length = 217

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGAWH-P 286
           E+ +D +F++ +++D+ G+T+GKG+ G V R    R    TH      R    IG    P
Sbjct: 98  ELKVD-IFKEGQVVDVRGLTRGKGFAGTVKRHNF-RTQDATHGNSLSHRAPGSIGQCQTP 155

Query: 287 ARVSYTVARAGQNGYHHRTEMNKKVYKI 370
            RV      AGQ G  + T  ++++ K+
Sbjct: 156 GRVWKGKKMAGQLGNVYCTVQSQEIIKV 183

---

>RL3_ACTAC (P94799) 50S ribosomal protein L3 (Fragment)|
          Length = 121

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WH 283
           +E+ +D +F   + +D+ G +KGKG++G V RW   R    TH        +G+      
Sbjct: 6   QEINVD-IFADVKKVDVTGTSKGKGFQGGVKRWNF-RTQDATHGNSLSHRVLGSIGQNQT 63

Query: 284 PARVSYTVARAGQNGYHHRTEMNKKVYKI 370
           P RV      AG  G    T  + +V ++
Sbjct: 64  PGRVFKGKKMAGHLGNERVTVQSLEVVRV 92

---

>RL3_PASMU (Q9CL32) 50S ribosomal protein L3|
          Length = 209

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLME--IQINGGTIADKVDYGYNF-FEKEVPIDAVFQKDEMIDIIG 172
           G+++  +  K +  H ++  ++   G    +   G  F   +E+ +D +F   + +D+ G
Sbjct: 53  GSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVD-IFADVKKVDVTG 111

Query: 173 VTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGA----WHPARVSYTVARAGQNGYHHR 340
            +KGKG+ G V RW   R    TH        +G+      P RV      AG  G    
Sbjct: 112 TSKGKGFAGGVKRWNF-RTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGNERV 170

Query: 341 TEMNKKVYKI 370
           T  + +V ++
Sbjct: 171 TVQSLEVVRV 180

---

>RL3_CHRVO (Q7NQF2) 50S ribosomal protein L3|
          Length = 214

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGT----IADKVDYGYNFFEKEVPIDAVFQKDEMIDII 169
           G+++  +  K    H  +  +  G      A   D   NF   +     +F   +++D+ 
Sbjct: 54  GSKKASRVNKADAGHFAKAGVEAGLGLAEFALSADALSNFKPGDAIAVEIFTVGQLVDVT 113

Query: 170 GVTKGKGYEGVVTR--WGVTRLPRKTHRGLRKVACIG-AWHPARVSYTVARAGQNG 328
           G +KGKG+ GV+ R  +   R      R       IG A  P RV      AGQ G
Sbjct: 114 GTSKGKGFSGVIKRHNFSSNRASHGNSRSHNTPGSIGQAQDPGRVFPGKRMAGQYG 169

---

>RL3_BRAPL (Q9FA04) 50S ribosomal protein L3|
          Length = 218

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVA-CIGA-WHPA 289
           +E+ +D +FQ  + ID+  ++KG+G+ GV+ R      P       R+ A  IG   +PA
Sbjct: 94  QELKVD-IFQAGDFIDVSSLSKGRGFAGVMKRHNYDGGPMSHGSNFRRRAGSIGCNSYPA 152

Query: 290 RVSYTVARAGQNGYHHRTEMNKKVYKI 370
           RV       G  G    T  N KV +I
Sbjct: 153 RVWKGKGMPGHMGNTLTTIQNLKVVEI 179

---

>RL3_CHLCV (Q824Q1) 50S ribosomal protein L3|
          Length = 221

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL-RKVACIGAWH-PARVSYTVA 310
           V +    +DI GV+KGKG++GV+ R+G    P+    G  R    IG    P R      
Sbjct: 111 VLEDISSVDISGVSKGKGFQGVMKRFGFRGGPKTHGSGFHRHAGSIGMRSTPGRCFPGSK 170

Query: 311 RAGQNGYHHRTEMNKKVYKI 370
           R    G  + T  N +V KI
Sbjct: 171 RPSHMGTVNVTVKNLEVVKI 190

---

>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3|
          Length = 266

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +2

Query: 134 AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG------LRKVACIGAWHPARV 295
           ++F   E +D+ G++KGKG+ G + R    ++  K+H G      +R+   +G     +V
Sbjct: 97  SIFTPGEFVDVTGISKGKGFAGTIKRHN-QKIGPKSHGGGGGSKPVRQTGSLGDISGNKV 155

Query: 296 SYTVARAGQNGYHHRTEMNKKV 361
              +   G  G+   T  N +V
Sbjct: 156 VKGMTMPGHLGHEQVTIQNLEV 177

---

>RL3_BUCAI (P57591) 50S ribosomal protein L3|
          Length = 209

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRW 214
           +F   + +DI G++KGKG+ G V RW
Sbjct: 100 IFNNVKKVDITGISKGKGFSGTVKRW 125

---

>RL3_MYCPE (Q8EUB3) 50S ribosomal protein L3|
          Length = 310

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 98  GYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW 214
           GYN  +K + +D +F   + +D   +TKGKG+ G + RW
Sbjct: 87  GYNVGDK-ILVD-IFNSGDKVDAQAITKGKGFTGAIKRW 123

---

>RL3_STAS1 (Q49ZG8) 50S ribosomal protein L3|
          Length = 219

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +EV ++  F+  ++ID+ GV+KGKG++G + R    R P
Sbjct: 103 QEVSVNT-FEAGDVIDVTGVSKGKGFQGAIKRHNQARGP 140

---

>RL3_CHLPN (Q9Z7Q7) 50S ribosomal protein L3|
          Length = 219

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL-RKVACIGAWH-PARVSYTVA 310
           VF+    +D+ G++KGKG++GV+ ++G    P     G  R    IG    P R      
Sbjct: 111 VFEDVSSVDVRGISKGKGFQGVMKKFGFRGGPGSHGSGFHRHAGSIGMRSTPGRCFPGSK 170

Query: 311 RAGQNGYHHRTEMNKKVYKI 370
           R    G  + T  N +V K+
Sbjct: 171 RPSHMGAENVTVKNLEVIKV 190

---

>RL3_STRAW (Q82DP5) 50S ribosomal protein L3|
          Length = 214

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
 Frame = +2

Query: 38  KAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTR-- 211
           + HL+EI+      AD  +Y      +E+  +  F+    +D+ G +KGKG+ GV+ R  
Sbjct: 80  RRHLVEIRT-----ADASEYTLG---QEITAET-FEAGVKVDVTGKSKGKGFAGVMKRHN 130

Query: 212 ---WGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKI 370
               G     ++ HR    +   G   P RV   +  AG+ G    T  N  V+ +
Sbjct: 131 FKGLGAGHGTQRKHRSPGSIG--GCATPGRVFKGLRMAGRMGNERVTTQNLTVHAV 184

---

>RL3_LACLA (Q9CDW2) 50S ribosomal protein L3|
          Length = 207

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 119 EVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           E+ +D  F   +++D+ G +KGKG++G + R G +R P
Sbjct: 94  EITVDT-FAAGDVVDVTGTSKGKGFQGPIKRHGQSRGP 130

---

>RL3_CHLMU (Q9PJL4) 50S ribosomal protein L3|
          Length = 221

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL-RKVACIGAWH-PARVSYTVA 310
           +F     +D+ G++KGKG++GV+ ++G    P+    G  R    IG    P R      
Sbjct: 111 IFDGVSNVDVCGISKGKGFQGVMKKFGFRGGPKSHGSGFHRHAGSIGMRSTPGRCFPGSK 170

Query: 311 RAGQNGYHHRTEMNKKVYKI 370
           R    G    T  N +V K+
Sbjct: 171 RPSHMGCDRVTVKNLEVVKV 190

---

>RL3_WOLSU (Q7M8D4) 50S ribosomal protein L3|
          Length = 192

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 176 TKGKGYEGVVTRWGVTRLP-RKTHRGLRKVACIG--AWHPARVSYTVARAGQNGYHHRTE 346
           TKG+G+ GV+ RW     P    HR  R+   IG   W P RV      AGQ G    T 
Sbjct: 100 TKGRGFTGVMKRWNFAGGPAAHGHRFKRRTGSIGNREW-PGRVQPGKKMAGQYGNEKVTV 158

Query: 347 MNKKV 361
            N+ V
Sbjct: 159 QNEIV 163

---

>RL3_CHLTR (O84533) 50S ribosomal protein L3|
          Length = 221

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVA 265
           +F     +DI G++KGKG++GV+ ++G    P+    G  + A
Sbjct: 111 IFDGVSNVDICGISKGKGFQGVMKKFGFRGGPKSHGSGFHRHA 153

---

>RL3_MYCGE (P47397) 50S ribosomal protein L3|
          Length = 257

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW 214
           K++    +F+  E +D+  +TKG+G+ G + RW
Sbjct: 94  KKITPQELFKIGEYVDVTSLTKGRGFTGAIKRW 126

---

>RL3_PHOLL (Q7MYF1) 50S ribosomal protein L3|
          Length = 209

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIAD--KVDYGYNFFEKEVPIDAVFQKDEMIDIIGV 175
           G+++  +  K +  H  +  +  G I    ++  G  +   +     +F   + +D+ G 
Sbjct: 53  GSKKASRVNKPEAGHFAKAGVEAGRILREFRLSEGEEYAVGQSISVEIFADVKKVDVTGT 112

Query: 176 TKGKGYEGVVTRW 214
           +KGKG+ G V RW
Sbjct: 113 SKGKGFAGTVKRW 125

---

>FLGH_PSEPU (Q52081) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 231

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -2

Query: 325 ILTSPSNSVG--HPSRMPGTNTGNLAKTSVGLAGKAGDTPTCHNTF----ITLTLGYTDD 164
           + +SPS S+     S+  G+     +KT +GL    G TP  +N F    ++L  GY+ D
Sbjct: 68  VTSSPSRSMSATSASKNAGSQIAKTSKTDIGLTSLFGSTPNTNNPFGGGDLSLEAGYSGD 127

---

>RL3_CAUCR (Q9A8V3) 50S ribosomal protein L3|
          Length = 255

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR---GLRKVACIG-AWHPARVSYTV 307
           F   + +DI GVT GKG+ G + RW    L R TH      R     G    P R     
Sbjct: 107 FVAGQKVDIQGVTVGKGFAGAMKRWNFGGL-RATHGVSVSHRSHGSTGNRQDPGRTFPGK 165

Query: 308 ARAGQNGYHHRTEMNKKVYKI 370
             AG  G    T +N  V+K+
Sbjct: 166 KMAGHLGQETVTTLNVTVWKV 186

---

>RL3_PSEPK (Q88QN5) 50S ribosomal protein L3|
          Length = 211

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRW 214
           +F   +++D+ G +KGKG+ G + RW
Sbjct: 100 LFTAGQLVDVTGQSKGKGFAGTIKRW 125

---

>RL3_YERPS (P11252) 50S ribosomal protein L3|
          Length = 209

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW 214
           +E+ ++ +F   + +D+ G +KGKG+ G V RW
Sbjct: 94  QEISVE-IFADVKKVDVTGTSKGKGFAGTVKRW 125

---

>RL3_YERPE (Q8ZJA9) 50S ribosomal protein L3|
          Length = 209

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRW 214
           +E+ ++ +F   + +D+ G +KGKG+ G V RW
Sbjct: 94  QEISVE-IFADVKKVDVTGTSKGKGFAGTVKRW 125

---

>RL3_MYCPN (P75580) 50S ribosomal protein L3|
          Length = 287

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRW 214
           +FQ  E +D+  ++KG+G+ G + RW
Sbjct: 101 LFQVGEYVDVSAISKGRGFTGAIKRW 126

---

>FLGH_PSEPK (Q88ER9) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 231

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 334 VVSILTSPSNSVGHPSRMPGTNTGNLAKTSVGLAGKAGDTPTCHNTF----ITLTLGYTD 167
           V  I+T   N     S+  G+     +KT +GL    G TP  +N F    ++L  GY+ 
Sbjct: 67  VGDIITITLNERTSASKNAGSQIAKTSKTDIGLTSLFGSTPNTNNPFGGGDLSLEAGYSG 126

Query: 166 D 164
           D
Sbjct: 127 D 127

---

>RL3_ONYPE (P60455) 50S ribosomal protein L3|
          Length = 157

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 232
           +FQ  +++D+ G +KGKG+ G + R   +R P
Sbjct: 42  LFQVGDLVDVTGTSKGKGFAGSIKRHNQSRGP 73

---

>RL3_STRCO (Q9L0E0) 50S ribosomal protein L3|
          Length = 214

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +2

Query: 116 KEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT--RLPRKTHRGLRKVACIGAW-HP 286
           +E+  +A F+    +D+   +KGKG+ GV+ R      +     HR  R    IG    P
Sbjct: 98  QEITAEA-FESGVKVDVTAKSKGKGFAGVMKRHNFKGGKASHGAHRVHRMPGSIGGCATP 156

Query: 287 ARVSYTVARAGQNGYHHRTEMNKKVYKI 370
            RV   +  AG+ G    T  N  V+ +
Sbjct: 157 GRVFKGMRMAGRMGNERVTTQNLTVHAV 184

---

>RL3_SHEON (Q8EK68) 50S ribosomal protein L3|
          Length = 212

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F     +D+ G +KGKG++G V RW   R    TH      R    IG    P RV   
Sbjct: 103 IFADVAKVDVTGQSKGKGFQGGVKRWNF-RTQDMTHGNSLSHRSNGSIGQNQTPGRVFKG 161

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              +G  G    T  N  V ++
Sbjct: 162 KKMSGHMGAERVTTQNLDVVRV 183

---

>RL3_SHIFL (P60447) 50S ribosomal protein L3|
          Length = 209

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G +KGKG+ G V RW   R    TH      R    IG    P +V   
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  +  V ++
Sbjct: 159 KKMAGQMGNERVTVQSLDVVRV 180

---

>RL3_SALTY (P60446) 50S ribosomal protein L3|
          Length = 209

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G +KGKG+ G V RW   R    TH      R    IG    P +V   
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  +  V ++
Sbjct: 159 KKMAGQMGNERVTVQSLDVVRV 180

---

>RL3_SALTI (P60445) 50S ribosomal protein L3|
          Length = 209

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G +KGKG+ G V RW   R    TH      R    IG    P +V   
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  +  V ++
Sbjct: 159 KKMAGQMGNERVTVQSLDVVRV 180

---

>RL3_ECOLI (P60438) 50S ribosomal protein L3|
          Length = 209

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G +KGKG+ G V RW   R    TH      R    IG    P +V   
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  +  V ++
Sbjct: 159 KKMAGQMGNERVTVQSLDVVRV 180

---

>RL3_ECOL6 (P60439) 50S ribosomal protein L3|
          Length = 209

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G +KGKG+ G V RW   R    TH      R    IG    P +V   
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  +  V ++
Sbjct: 159 KKMAGQMGNERVTVQSLDVVRV 180

---

>RL3_ECO57 (P60440) 50S ribosomal protein L3|
          Length = 209

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 137 VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL---RKVACIGA-WHPARVSYT 304
           +F   + +D+ G +KGKG+ G V RW   R    TH      R    IG    P +V   
Sbjct: 100 LFADVKKVDVTGTSKGKGFAGTVKRWNF-RTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  +  V ++
Sbjct: 159 KKMAGQMGNERVTVQSLDVVRV 180

---

>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 26   LKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
            +KQ KA   EI +N   I   +  G    EK  P+DA   ++E+ ++
Sbjct: 8146 IKQLKAFQQEISLNHNKIEQIIAQGEQLIEKSEPLDAAIIEEELDEL 8192

---

>HUTI_BACHD (Q9KBE4) Imidazolonepropionase (EC 3.5.2.7)|
           (Imidazolone-5-propionate hydrolase)
          Length = 426

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 31/118 (26%), Positives = 49/118 (41%)
 Frame = +2

Query: 2   GTRRKMKGLKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTK 181
           G+R     LKQ+    +EI  NGG I   V+      E+E+   A+   + M+   GVT 
Sbjct: 87  GSREHEMALKQQGVPYLEILKNGGGILATVEATRAASEEELITKAICHLNRMLS-YGVTT 145

Query: 182 GKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNK 355
            +   G    +G+ R      + LR    +G  HP  +  T   A      HR + ++
Sbjct: 146 IEAKSG----YGLDR--ETEWKQLRAAKAVGEQHPIDIVSTFLGAHAIPTSHRNDPDR 197

---

>RL3_BRAJA (Q89J84) 50S ribosomal protein L3|
          Length = 238

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 122 VPIDAVFQKD-----EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 244
           +P+ A  Q D     + +D+ G + GKG+ G + RW    L R TH
Sbjct: 91  IPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGL-RATH 135

---

>HOY1_YARLI (Q99160) Homeobox protein HOY1|
          Length = 509

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -2

Query: 331 VSILTSPSNSVGHPSRMPGTNTGNLAKTSVGLAGKAGDTPTCHNTFITLTLGYTDDVNHL 152
           V+ +T+PS  V + + +      NL  T +G       TP   + F    LG+  D+N L
Sbjct: 405 VAHVTNPSGHVTNHNHLSDP-AANLTSTILGNVTPGHTTPVLDDGF---ELGHVTDINDL 460

Query: 151 IFLENRINGDFLLKEVVTIVHLIGNGA-TID 62
           + +   +       E+ +  H+I N A T+D
Sbjct: 461 VSVAQLLPNHVTEAELASNCHMIANNAFTLD 491

---

>RL3_RHOPA (P60456) 50S ribosomal protein L3 (RRP-L3)|
          Length = 241

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 122 VPIDAVFQKD-----EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH 244
           +P+ A  Q D     + +D+ G + GKG+ G + RW    L R TH
Sbjct: 91  LPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKRWNFGGL-RATH 135

---

>RL3_PLARO (P72233) 50S ribosomal protein L3 (Fragment)|
          Length = 140

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWG 217
           F+  + +D+ G +KGKG+ GV+ R G
Sbjct: 105 FEAGQFVDVTGKSKGKGFAGVMKRHG 130

---

>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1003

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 323 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 222
           +D+ E++ R P +++R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKESRRSGRATNHDSCDSCKEGG 66

---

>RL3_PROMM (Q7V542) 50S ribosomal protein L3|
          Length = 218

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRK-THRGLRKVACIGA-WHPARVSYTVAR 313
           F+  + +D+ G T G+G+ G   R G +R P     +  R+    GA   P R+      
Sbjct: 102 FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRM 161

Query: 314 AGQNGYHHRTEMNKKVYKI 370
           AG+ G   RT     + K+
Sbjct: 162 AGRYGGKKRTTRGLTILKV 180

---

>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 323 SDQPEQQCRTP*QDARHQYRQPCEDLCGSCGEGG 222
           +D+ E++ R P ++ R   R    D C SC EGG
Sbjct: 33  TDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGG 66

---

>RL3_RHOBA (Q7UN20) 50S ribosomal protein L3|
          Length = 228

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWG-----VTRLPRKTHRGLRKVACIGAWHPARVSYT 304
           F   + +DI G +KG+G+ GV+ R        T   +K HR         +  P+R    
Sbjct: 119 FNDVKKVDITGTSKGRGFAGVMKRHNFAGQRATHGVKKCHRHAGGTGMSAS--PSRTFKG 176

Query: 305 VARAGQNGYHHRTEMNKKVYKI 370
              AGQ G    T  N +V ++
Sbjct: 177 KRMAGQYGNAKVTTRNLEVVRV 198

---

>RK3_ODOSI (P49569) Chloroplast 50S ribosomal protein L3|
          Length = 196

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = +2

Query: 152 EMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHRGLRKVACIGAWHPARVSYTVARAG 319
           + ID+ G + GKG+ G+  R   TR P     K HR    +       P RV      AG
Sbjct: 95  QFIDVTGKSSGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGM--GTTPGRVLPGKKMAG 152

Query: 320 QNGYHHRTEMNKKVYKIGKVGQE 388
           Q G  ++    KK+  I   G E
Sbjct: 153 QLG--NKVTKTKKLKIIQVNGNE 173

---

>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)|
            (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus
            and actin connecting element protein) (NUANCE protein)
          Length = 6885

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 26   LKQKKAHLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDI 166
            ++Q      EI +N   I   + +G    +K  P+DAV  +DE+ ++
Sbjct: 6283 MRQLNGFQQEITLNTNKIDQLIVFGEQLIQKSEPLDAVLIEDELEEL 6329

---

>RL3_PROMA (Q7V9W2) 50S ribosomal protein L3|
          Length = 219

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP----RKTHR 247
           F++ + +D+ G + G+G+ G   R G +R P     K HR
Sbjct: 102 FEEGQKVDVSGTSMGRGFSGYQKRHGFSRGPMSHGSKNHR 141

---

>RL3_AGRT5 (Q8UE18) 50S ribosomal protein L3|
          Length = 213

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTR 211
           FQ  +++D+ G T GKG+ G + R
Sbjct: 102 FQSGQLVDVTGTTIGKGFAGAMKR 125

---

>RL3_ANASP (Q8YPH9) 50S ribosomal protein L3|
          Length = 211

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +2

Query: 44  HLMEIQINGGTIADKVDYGYNFFEKEVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVT 223
           HL E   +G +     DY      +E+  D +F   E++D+IG + G+G+ G   R    
Sbjct: 79  HLKEYHTDGSS-----DYALG---QEIKAD-IFSVGELVDVIGTSIGRGFAGNQKRNNFG 129

Query: 224 RLP----RKTHR 247
           R P     K HR
Sbjct: 130 RGPMSHGSKNHR 141

---

>MRAY_CHLCH (Q3ANV6) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 368

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 340 PMVVSILTSPSNSVGHPSRMPGTNTGNLAKTSVGLAGKA 224
           P+V+ I+T+ SN+V     + G   G  A   +GLAG A
Sbjct: 180 PVVIFIITAISNAVNLTDGLDGLAAGTSAIAFIGLAGFA 218

---

>RL3_SYNPX (Q7U4K0) 50S ribosomal protein L3|
          Length = 218

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +2

Query: 140 FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTH--RGLRKVACIG-AWHPARVSYTVA 310
           F+  + +D+ G T G+G+ G   R G +R P  TH  +  R+   IG    P R+     
Sbjct: 102 FEAGQKVDVSGDTIGRGFSGYQKRHGFSRGP-MTHGSKNHREPGSIGPGTTPGRIYPGKR 160

Query: 311 RAGQNGYHHRTEMNKKVYKI 370
            AG+ G    T     + K+
Sbjct: 161 MAGRYGGKKITTRGLTILKV 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,973,789
Number of Sequences: 219361
Number of extensions: 1346446
Number of successful extensions: 4338
Number of sequences better than 10.0: 192
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4292
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---