Clone Name | baak4n18 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104746.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E07, full insert sequence Length = 1720 Score = 236 bits (119), Expect = 6e-59 Identities = 360/439 (82%), Gaps = 1/439 (0%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 793 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 852 Query: 61 gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120 |||||| | |||| | |||||||||| |||||||| |||||||| ||| |||||||||| Sbjct: 853 aacaaaatcatttgctccagagctggttgactctttaaaaagagttttgaaaaggttcta 912 Query: 121 cggggaggatccgttgcaatcggcggacctgtctcgtattgtaaatattagccatttcca 180 ||||||||||| |||||||| | ||| |||| |||||||| ||| || |||||||| Sbjct: 913 tggggaggatcctttgcaatcagaagacttgtcccgtattgtgaattctaaccatttccg 972 Query: 181 ccgattagcaaagttgctagatgataagaaagtcgccgaaaagattctgctcggtggcca 240 |||| |||| ||| |||| ||||||||||||||| |||||||| | |||||||| Sbjct: 973 tagattgacaaatttgatagaggataagaaagtcgcccaaaagattgtatatggtggcca 1032 Query: 241 gacagatatggagcaactaaaaatagctcctacggtgctggtagatgttcctcttgatac 300 |||||| | |||||||||||||||||||||| ||| || ||||||||||||||||||| Sbjct: 1033 aacagatgagaagcaactaaaaatagctcctactgtgttgttagatgttcctcttgatac 1092 Query: 301 agaactcatgaagggggaaatatttggccccatgcttccaattataacggtcgacaagat 360 | ||||||| | |||||| ||||| ||| | ||||| ||| |||| || |||||||| Sbjct: 1093 aacactcatggcagaggaaatttttggtcccttacttcccattgtaacagttgacaagat 1152 Query: 361 tgaagaaggcatcacgcacatcaacgccggggcgaagccactcgcggcctacctcttcac 420 |||||| ||||| | ||||||| | || | |||||||| || ||||| || ||||| Sbjct: 1153 tgaagatagcatccagttcatcaactcaaggaccaagccacttgcagcctatcttttcac 1212 Query: 421 caaggacaagaaactgcaa 439 ||||||||||||||||||| Sbjct: 1213 caaggacaagaaactgcaa 1231
>dbj|AK104603.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H06, full insert sequence Length = 1720 Score = 236 bits (119), Expect = 6e-59 Identities = 360/439 (82%), Gaps = 1/439 (0%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 793 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 852 Query: 61 gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120 |||||| | |||| | |||||||||| |||||||| |||||||| ||| |||||||||| Sbjct: 853 aacaaaatcatttgctccagagctggttgactctttaaaaagagttttgaaaaggttcta 912 Query: 121 cggggaggatccgttgcaatcggcggacctgtctcgtattgtaaatattagccatttcca 180 ||||||||||| |||||||| | ||| |||| |||||||| ||| || |||||||| Sbjct: 913 tggggaggatcctttgcaatcagaagacttgtcccgtattgtgaattctaaccatttccg 972 Query: 181 ccgattagcaaagttgctagatgataagaaagtcgccgaaaagattctgctcggtggcca 240 |||| |||| ||| |||| ||||||||||||||| |||||||| | |||||||| Sbjct: 973 tagattgacaaatttgatagaggataagaaagtcgcccaaaagattgtatatggtggcca 1032 Query: 241 gacagatatggagcaactaaaaatagctcctacggtgctggtagatgttcctcttgatac 300 |||||| | |||||||||||||||||||||| ||| || ||||||||||||||||||| Sbjct: 1033 aacagatgagaagcaactaaaaatagctcctactgtgttgttagatgttcctcttgatac 1092 Query: 301 agaactcatgaagggggaaatatttggccccatgcttccaattataacggtcgacaagat 360 | ||||||| | |||||| ||||| ||| | ||||| ||| |||| || |||||||| Sbjct: 1093 aacactcatggcagaggaaatttttggtcccttacttcccattgtaacagttgacaagat 1152 Query: 361 tgaagaaggcatcacgcacatcaacgccggggcgaagccactcgcggcctacctcttcac 420 |||||| ||||| | ||||||| | || | |||||||| || ||||| || ||||| Sbjct: 1153 tgaagatagcatccagttcatcaactcaaggaccaagccacttgcagcctatcttttcac 1212 Query: 421 caaggacaagaaactgcaa 439 ||||||||||||||||||| Sbjct: 1213 caaggacaagaaactgcaa 1231
>dbj|AK068297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146E24, full insert sequence Length = 1922 Score = 236 bits (119), Expect = 6e-59 Identities = 360/439 (82%), Gaps = 1/439 (0%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 794 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 853 Query: 61 gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120 |||||| | |||| | |||||||||| |||||||| |||||||| ||| |||||||||| Sbjct: 854 aacaaaatcatttgctccagagctggttgactctttaaaaagagttttgaaaaggttcta 913 Query: 121 cggggaggatccgttgcaatcggcggacctgtctcgtattgtaaatattagccatttcca 180 ||||||||||| |||||||| | ||| |||| |||||||| ||| || |||||||| Sbjct: 914 tggggaggatcctttgcaatcagaagacttgtcccgtattgtgaattctaaccatttccg 973 Query: 181 ccgattagcaaagttgctagatgataagaaagtcgccgaaaagattctgctcggtggcca 240 |||| |||| ||| |||| ||||||||||||||| |||||||| | |||||||| Sbjct: 974 tagattgacaaatttgatagaggataagaaagtcgcccaaaagattgtatatggtggcca 1033 Query: 241 gacagatatggagcaactaaaaatagctcctacggtgctggtagatgttcctcttgatac 300 |||||| | |||||||||||||||||||||| ||| || ||||||||||||||||||| Sbjct: 1034 aacagatgagaagcaactaaaaatagctcctactgtgttgttagatgttcctcttgatac 1093 Query: 301 agaactcatgaagggggaaatatttggccccatgcttccaattataacggtcgacaagat 360 | ||||||| | |||||| ||||| ||| | ||||| ||| |||| || |||||||| Sbjct: 1094 aacactcatggcagaggaaatttttggtcccttacttcccattgtaacagttgacaagat 1153 Query: 361 tgaagaaggcatcacgcacatcaacgccggggcgaagccactcgcggcctacctcttcac 420 |||||| ||||| | ||||||| | || | |||||||| || ||||| || ||||| Sbjct: 1154 tgaagatagcatccagttcatcaactcaaggaccaagccacttgcagcctatcttttcac 1213 Query: 421 caaggacaagaaactgcaa 439 ||||||||||||||||||| Sbjct: 1214 caaggacaagaaactgcaa 1232
>gb|AY104932.1| Zea mays PCO147149 mRNA sequence Length = 2304 Score = 131 bits (66), Expect = 3e-27 Identities = 139/162 (85%), Gaps = 1/162 (0%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggccg-gcatgcattgctccggattacatcataac 60 |||||| ||||||||||| ||||| |||| |||||||||||||| |||||||||||||| Sbjct: 1206 tgttggcaaatggggatgcaacaacggccaagcatgcattgctccagattacatcataac 1265 Query: 61 gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120 ||||||| | |||| | |||||||| | |||||| |||||||| |||||||||||||| Sbjct: 1266 gacaaaatcatttgcaccggagctggtggcctctttcaaaagagttttggaaaggttcta 1325 Query: 121 cggggaggatccgttgcaatcggcggacctgtctcgtattgt 162 ||||||||||| || |||| || ||| ||||||||||||| Sbjct: 1326 tggggaggatcctctggaatcagcagacttgtctcgtattgt 1367 Score = 48.1 bits (24), Expect = 0.029 Identities = 90/112 (80%) Strand = Plus / Plus Query: 252 agcaactaaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatga 311 ||||||||||||| ||||||| | || ||||||||||| ||| ||||| | |||| Sbjct: 1457 agcaactaaaaatttctcctacactattgttagatgttcctgaagattcagaaattatga 1516 Query: 312 agggggaaatatttggccccatgcttccaattataacggtcgacaagattga 363 || ||||||||||| ||| ||||||| ||| | |||||||| |||||||| Sbjct: 1517 caggcgaaatatttgggcccttgcttcctattgtgacggtcgaaaagattga 1568
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 89 gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148 |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| | ||| Sbjct: 140521 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 140580 Query: 149 ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208 |||| |||||||| ||| || |||||||| |||| |||| ||| |||| |||||| Sbjct: 140581 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 140640 Query: 209 aaagtcgccgaaaagatt 226 ||||||||| |||||||| Sbjct: 140641 aaagtcgcccaaaagatt 140658 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 259 aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310 ||||||||||||||| ||| || |||||||||||||||||||| ||||||| Sbjct: 140783 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 140834 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 395 aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439 |||||||| || ||||| || |||||||||||||||||||||||| Sbjct: 141237 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 141281 Score = 54.0 bits (27), Expect = 5e-04 Identities = 73/87 (83%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 140344 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 140403 Query: 61 gacaaaagcgtttgttacagagctggt 87 |||||| | |||| | |||||||||| Sbjct: 140404 aacaaaatcatttgctccagagctggt 140430
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 89 gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148 |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| | ||| Sbjct: 10374 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 10433 Query: 149 ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208 |||| |||||||| ||| || |||||||| |||| |||| ||| |||| |||||| Sbjct: 10434 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 10493 Query: 209 aaagtcgccgaaaagatt 226 ||||||||| |||||||| Sbjct: 10494 aaagtcgcccaaaagatt 10511 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 259 aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310 ||||||||||||||| ||| || |||||||||||||||||||| ||||||| Sbjct: 10636 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 10687 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 395 aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439 |||||||| || ||||| || |||||||||||||||||||||||| Sbjct: 11090 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 11134 Score = 54.0 bits (27), Expect = 5e-04 Identities = 73/87 (83%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 10197 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 10256 Query: 61 gacaaaagcgtttgttacagagctggt 87 |||||| | |||| | |||||||||| Sbjct: 10257 aacaaaatcatttgctccagagctggt 10283
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 89 gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148 |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| | ||| Sbjct: 4359011 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 4359070 Query: 149 ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208 |||| |||||||| ||| || |||||||| |||| |||| ||| |||| |||||| Sbjct: 4359071 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 4359130 Query: 209 aaagtcgccgaaaagatt 226 ||||||||| |||||||| Sbjct: 4359131 aaagtcgcccaaaagatt 4359148 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 259 aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310 ||||||||||||||| ||| || |||||||||||||||||||| ||||||| Sbjct: 4359273 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 4359324 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 395 aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439 |||||||| || ||||| || |||||||||||||||||||||||| Sbjct: 4359727 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 4359771 Score = 54.0 bits (27), Expect = 5e-04 Identities = 73/87 (83%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 4358834 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 4358893 Query: 61 gacaaaagcgtttgttacagagctggt 87 |||||| | |||| | |||||||||| Sbjct: 4358894 aacaaaatcatttgctccagagctggt 4358920
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 91.7 bits (46), Expect = 2e-15 Identities = 115/138 (83%) Strand = Plus / Plus Query: 89 gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148 |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| | ||| Sbjct: 4367705 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 4367764 Query: 149 ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208 |||| |||||||| ||| || |||||||| |||| |||| ||| |||| |||||| Sbjct: 4367765 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 4367824 Query: 209 aaagtcgccgaaaagatt 226 ||||||||| |||||||| Sbjct: 4367825 aaagtcgcccaaaagatt 4367842 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 259 aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310 ||||||||||||||| ||| || |||||||||||||||||||| ||||||| Sbjct: 4367967 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 4368018 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 395 aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439 |||||||| || ||||| || |||||||||||||||||||||||| Sbjct: 4368421 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 4368465 Score = 54.0 bits (27), Expect = 5e-04 Identities = 73/87 (83%), Gaps = 1/87 (1%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60 |||||| || |||||||||||||| || | ||||||||||||||| || ||| | ||||| Sbjct: 4367528 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 4367587 Query: 61 gacaaaagcgtttgttacagagctggt 87 |||||| | |||| | |||||||||| Sbjct: 4367588 aacaaaatcatttgctccagagctggt 4367614
>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence Length = 105215 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 91 ctctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggacct 150 |||||||||||||||||||| ||||||||| ||||||||||| ||||||| || ||| | Sbjct: 14723 ctctttgaaaagagtcttggtaaggttctatggggaggatcctctgcaatcagcagactt 14782 Query: 151 gtctcgtattgt 162 |||||||||||| Sbjct: 14783 gtctcgtattgt 14794 Score = 69.9 bits (35), Expect = 8e-09 Identities = 57/63 (90%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 2 tgttggtaaatggggatgtaacaatggccg-gcatgcattgctccggattacatcataac 60 |||||| ||||||||||| |||||||||| || ||||||||||| |||||||||||||| Sbjct: 14531 tgttggcaaatggggatgcaacaatggccaagcgtgcattgctccagattacatcataac 14590 Query: 61 gac 63 ||| Sbjct: 14591 gac 14593 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 395 aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439 ||||||||||| |||||||| ||||||||| ||||||| |||||| Sbjct: 15414 aagccactcgctgcctaccttttcaccaagaacaagaagctgcaa 15458
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 284 gatgttcctcttgatacagaactcatgaagggggaaatatttggccccatgcttccaatt 343 ||||||||||||||| ||| ||||||||| |||||| ||||||||| ||||||| || Sbjct: 3953672 gatgttcctcttgattcagggatcatgaaggaggaaatctttggccccttgcttcctatc 3953731 Query: 344 ataacggt 351 |||||||| Sbjct: 3953732 ataacggt 3953739 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 407 gcctacctcttcaccaaggaca 428 |||||||||||||||||||||| Sbjct: 3953926 gcctacctcttcaccaaggaca 3953947
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 284 gatgttcctcttgatacagaactcatgaagggggaaatatttggccccatgcttccaatt 343 ||||||||||||||| ||| ||||||||| |||||| ||||||||| ||||||| || Sbjct: 3953646 gatgttcctcttgattcagggatcatgaaggaggaaatctttggccccttgcttcctatc 3953705 Query: 344 ataacggt 351 |||||||| Sbjct: 3953706 ataacggt 3953713 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 407 gcctacctcttcaccaaggaca 428 |||||||||||||||||||||| Sbjct: 3953900 gcctacctcttcaccaaggaca 3953921
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 284 gatgttcctcttgatacagaactcatgaagggggaaatatttggccccatgcttccaatt 343 ||||||||||||||| ||| ||||||||| |||||| ||||||||| ||||||| || Sbjct: 115648 gatgttcctcttgattcagggatcatgaaggaggaaatctttggccccttgcttcctatc 115707 Query: 344 ataacggt 351 |||||||| Sbjct: 115708 ataacggt 115715 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 407 gcctacctcttcaccaaggaca 428 |||||||||||||||||||||| Sbjct: 115902 gcctacctcttcaccaaggaca 115923
>gb|AC125211.4| Mus musculus BAC clone RP23-128E9 from chromosome 6, complete sequence Length = 193979 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 274 ggtgctggtagatgttcctcttgata 299 ||||||||||||||||||||| |||| Sbjct: 94255 ggtgctggtagatgttcctctggata 94280
>gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome 3, complete sequence Length = 181261 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 gccccatgcttccaattataa 347 ||||||||||||||||||||| Sbjct: 144967 gccccatgcttccaattataa 144947
>gb|AC100794.2| Homo sapiens chromosome 18, clone CTD-2559F21, complete sequence Length = 143575 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 ttgtaaatattagccatttcc 179 ||||||||||||||||||||| Sbjct: 115962 ttgtaaatattagccatttcc 115982
>gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, complete sequence Length = 179544 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 ttgtaaatattagccatttcc 179 ||||||||||||||||||||| Sbjct: 20909 ttgtaaatattagccatttcc 20929
>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence Length = 192476 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 aaactgcaacaagatttcgt 450 |||||||||||||||||||| Sbjct: 71634 aaactgcaacaagatttcgt 71653 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 aaactgcaacaagatttcgt 450 |||||||||||||||||||| Sbjct: 68702 aaactgcaacaagatttcgt 68721
>ref|XM_652793.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0281.2), mRNA Length = 1362 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 actcgcggcctacctcttcaccaa 423 ||||||||||||||||||| |||| Sbjct: 1035 actcgcggcctacctcttctccaa 1058
>ref|XM_985464.1| PREDICTED: Mus musculus excision repair cross-complementing rodent repair deficiency, complementation group 6, transcript variant 5 (Ercc6), mRNA Length = 6598 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 6321 agcaaagttgctagatgata 6302
>ref|XM_899152.2| PREDICTED: Mus musculus excision repair cross-complementing rodent repair deficiency, complementation group 6, transcript variant 4 (Ercc6), mRNA Length = 6715 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 6438 agcaaagttgctagatgata 6419
>ref|XM_484360.4| PREDICTED: Mus musculus excision repair cross-complementing rodent repair deficiency, complementation group 6, transcript variant 1 (Ercc6), mRNA Length = 8422 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 8145 agcaaagttgctagatgata 8126
>ref|XM_986718.1| PREDICTED: Mus musculus excision repair cross-complementing rodent repair deficiency, complementation group 6, transcript variant 9 (Ercc6), mRNA Length = 6598 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 6321 agcaaagttgctagatgata 6302
>ref|XM_922393.2| PREDICTED: Mus musculus excision repair cross-complementing rodent repair deficiency, complementation group 6, transcript variant 8 (Ercc6), mRNA Length = 6715 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 6438 agcaaagttgctagatgata 6419
>ref|XM_912465.2| PREDICTED: Mus musculus excision repair cross-complementing rodent repair deficiency, complementation group 6, transcript variant 5 (Ercc6), mRNA Length = 8422 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 8145 agcaaagttgctagatgata 8126
>gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosome 18, complete sequence Length = 142250 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ttgaaaagagtcttggaaag 114 |||||||||||||||||||| Sbjct: 13217 ttgaaaagagtcttggaaag 13198
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 472 catgctcgtcaacgacgtcgccct 495 ||||||||||||||||||| |||| Sbjct: 125848 catgctcgtcaacgacgtctccct 125825
>gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, complete sequence Length = 220088 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ttgaaaagagtcttggaaag 114 |||||||||||||||||||| Sbjct: 193342 ttgaaaagagtcttggaaag 193323
>gb|AC150981.14| Medicago truncatula clone mth2-166m22, complete sequence Length = 116485 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 aagtcgccgaaaagattctg 229 |||||||||||||||||||| Sbjct: 77323 aagtcgccgaaaagattctg 77342
>gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, complete sequence Length = 202033 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 caacaagatttcgtctcaaa 456 |||||||||||||||||||| Sbjct: 126015 caacaagatttcgtctcaaa 126034
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gtgctggtagatgttcctct 294 |||||||||||||||||||| Sbjct: 5004471 gtgctggtagatgttcctct 5004452
>dbj|AK139396.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830042P19 product:unclassifiable, full insert sequence Length = 3167 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 2875 agcaaagttgctagatgata 2856
>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence Length = 164220 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 acaagaaactgcaacaagat 445 |||||||||||||||||||| Sbjct: 75217 acaagaaactgcaacaagat 75198
>gb|AF260011.2|AF260011 Homo sapiens chromosome 21 clone PAC H08866 map 21q22.1, complete sequence Length = 113729 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gatatggagcaactaaaaat 264 |||||||||||||||||||| Sbjct: 96153 gatatggagcaactaaaaat 96172
>dbj|BS000169.1| Pan troglodytes chromosome 22 clone:RP43-042E01, map 22, complete sequences Length = 228269 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gatatggagcaactaaaaat 264 |||||||||||||||||||| Sbjct: 181232 gatatggagcaactaaaaat 181251
>emb|AL163248.2|HS21C048 Homo sapiens chromosome 21 segment HS21C048 Length = 340000 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gatatggagcaactaaaaat 264 |||||||||||||||||||| Sbjct: 331993 gatatggagcaactaaaaat 332012
>gb|AC154412.3| Mus musculus BAC clone RP24-225G4 from 14, complete sequence Length = 182048 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 165304 agcaaagttgctagatgata 165285
>gb|AF109131.1|AF109131 Sinorhizobium meliloti homogentisate dioxygenase (hmgA) and maleylacetoacetate isomerase (maiA) genes, complete cds; and unknown gene Length = 3256 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 472 catgctcgtcaacgacgtcgccct 495 ||||||||||||||||||| |||| Sbjct: 2001 catgctcgtcaacgacgtctccct 2024
>emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chromosome 14, complete sequence Length = 215157 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agcaaagttgctagatgata 206 |||||||||||||||||||| Sbjct: 181556 agcaaagttgctagatgata 181575 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,722,427 Number of Sequences: 3902068 Number of extensions: 3722427 Number of successful extensions: 61957 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61759 Number of HSP's gapped (non-prelim): 184 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)