ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104746.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
2dbj|AK104603.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
3dbj|AK068297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
4gb|AY104932.1| Zea mays PCO147149 mRNA sequence 131 3e-27
5gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
6gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
9gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq... 88 3e-14
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 64 5e-07
12emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa... 64 5e-07
13gb|AC125211.4| Mus musculus BAC clone RP23-128E9 from chromosome... 44 0.45
14gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome... 42 1.8
15gb|AC100794.2| Homo sapiens chromosome 18, clone CTD-2559F21, co... 42 1.8
16gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, co... 42 1.8
17gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complet... 40 7.1
18ref|XM_652793.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.1
19ref|XM_985464.1| PREDICTED: Mus musculus excision repair cross-c... 40 7.1
20ref|XM_899152.2| PREDICTED: Mus musculus excision repair cross-c... 40 7.1
21ref|XM_484360.4| PREDICTED: Mus musculus excision repair cross-c... 40 7.1
22ref|XM_986718.1| PREDICTED: Mus musculus excision repair cross-c... 40 7.1
23ref|XM_922393.2| PREDICTED: Mus musculus excision repair cross-c... 40 7.1
24ref|XM_912465.2| PREDICTED: Mus musculus excision repair cross-c... 40 7.1
25gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosom... 40 7.1
26emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 40 7.1
27gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, compl... 40 7.1
28gb|AC150981.14| Medicago truncatula clone mth2-166m22, complete ... 40 7.1
29gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, com... 40 7.1
30gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.1
31dbj|AK139396.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 7.1
32gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, co... 40 7.1
33gb|AF260011.2|AF260011 Homo sapiens chromosome 21 clone PAC H088... 40 7.1
34dbj|BS000169.1| Pan troglodytes chromosome 22 clone:RP43-042E01,... 40 7.1
35emb|AL163248.2|HS21C048 Homo sapiens chromosome 21 segment HS21C048 40 7.1
36gb|AC154412.3| Mus musculus BAC clone RP24-225G4 from 14, comple... 40 7.1
37gb|AF109131.1|AF109131 Sinorhizobium meliloti homogentisate diox... 40 7.1
38emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chr... 40 7.1

>dbj|AK104746.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E07, full
            insert sequence
          Length = 1720

 Score =  236 bits (119), Expect = 6e-59
 Identities = 360/439 (82%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
            |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 793  tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 852

                                                                        
Query: 61   gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120
             |||||| | |||| | |||||||||| |||||||| |||||||| ||| ||||||||||
Sbjct: 853  aacaaaatcatttgctccagagctggttgactctttaaaaagagttttgaaaaggttcta 912

                                                                        
Query: 121  cggggaggatccgttgcaatcggcggacctgtctcgtattgtaaatattagccatttcca 180
             ||||||||||| |||||||| |  ||| |||| |||||||| |||  || |||||||| 
Sbjct: 913  tggggaggatcctttgcaatcagaagacttgtcccgtattgtgaattctaaccatttccg 972

                                                                        
Query: 181  ccgattagcaaagttgctagatgataagaaagtcgccgaaaagattctgctcggtggcca 240
              ||||  |||| ||| |||| ||||||||||||||| |||||||| |    ||||||||
Sbjct: 973  tagattgacaaatttgatagaggataagaaagtcgcccaaaagattgtatatggtggcca 1032

                                                                        
Query: 241  gacagatatggagcaactaaaaatagctcctacggtgctggtagatgttcctcttgatac 300
             ||||||  | |||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1033 aacagatgagaagcaactaaaaatagctcctactgtgttgttagatgttcctcttgatac 1092

                                                                        
Query: 301  agaactcatgaagggggaaatatttggccccatgcttccaattataacggtcgacaagat 360
            |  |||||||   | |||||| ||||| ||| | ||||| ||| |||| || ||||||||
Sbjct: 1093 aacactcatggcagaggaaatttttggtcccttacttcccattgtaacagttgacaagat 1152

                                                                        
Query: 361  tgaagaaggcatcacgcacatcaacgccggggcgaagccactcgcggcctacctcttcac 420
            ||||||  |||||  |  ||||||| |  || | |||||||| || ||||| || |||||
Sbjct: 1153 tgaagatagcatccagttcatcaactcaaggaccaagccacttgcagcctatcttttcac 1212

                               
Query: 421  caaggacaagaaactgcaa 439
            |||||||||||||||||||
Sbjct: 1213 caaggacaagaaactgcaa 1231



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>dbj|AK104603.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H06, full
            insert sequence
          Length = 1720

 Score =  236 bits (119), Expect = 6e-59
 Identities = 360/439 (82%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
            |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 793  tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 852

                                                                        
Query: 61   gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120
             |||||| | |||| | |||||||||| |||||||| |||||||| ||| ||||||||||
Sbjct: 853  aacaaaatcatttgctccagagctggttgactctttaaaaagagttttgaaaaggttcta 912

                                                                        
Query: 121  cggggaggatccgttgcaatcggcggacctgtctcgtattgtaaatattagccatttcca 180
             ||||||||||| |||||||| |  ||| |||| |||||||| |||  || |||||||| 
Sbjct: 913  tggggaggatcctttgcaatcagaagacttgtcccgtattgtgaattctaaccatttccg 972

                                                                        
Query: 181  ccgattagcaaagttgctagatgataagaaagtcgccgaaaagattctgctcggtggcca 240
              ||||  |||| ||| |||| ||||||||||||||| |||||||| |    ||||||||
Sbjct: 973  tagattgacaaatttgatagaggataagaaagtcgcccaaaagattgtatatggtggcca 1032

                                                                        
Query: 241  gacagatatggagcaactaaaaatagctcctacggtgctggtagatgttcctcttgatac 300
             ||||||  | |||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1033 aacagatgagaagcaactaaaaatagctcctactgtgttgttagatgttcctcttgatac 1092

                                                                        
Query: 301  agaactcatgaagggggaaatatttggccccatgcttccaattataacggtcgacaagat 360
            |  |||||||   | |||||| ||||| ||| | ||||| ||| |||| || ||||||||
Sbjct: 1093 aacactcatggcagaggaaatttttggtcccttacttcccattgtaacagttgacaagat 1152

                                                                        
Query: 361  tgaagaaggcatcacgcacatcaacgccggggcgaagccactcgcggcctacctcttcac 420
            ||||||  |||||  |  ||||||| |  || | |||||||| || ||||| || |||||
Sbjct: 1153 tgaagatagcatccagttcatcaactcaaggaccaagccacttgcagcctatcttttcac 1212

                               
Query: 421  caaggacaagaaactgcaa 439
            |||||||||||||||||||
Sbjct: 1213 caaggacaagaaactgcaa 1231



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>dbj|AK068297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146E24, full
            insert sequence
          Length = 1922

 Score =  236 bits (119), Expect = 6e-59
 Identities = 360/439 (82%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
            |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 794  tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 853

                                                                        
Query: 61   gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120
             |||||| | |||| | |||||||||| |||||||| |||||||| ||| ||||||||||
Sbjct: 854  aacaaaatcatttgctccagagctggttgactctttaaaaagagttttgaaaaggttcta 913

                                                                        
Query: 121  cggggaggatccgttgcaatcggcggacctgtctcgtattgtaaatattagccatttcca 180
             ||||||||||| |||||||| |  ||| |||| |||||||| |||  || |||||||| 
Sbjct: 914  tggggaggatcctttgcaatcagaagacttgtcccgtattgtgaattctaaccatttccg 973

                                                                        
Query: 181  ccgattagcaaagttgctagatgataagaaagtcgccgaaaagattctgctcggtggcca 240
              ||||  |||| ||| |||| ||||||||||||||| |||||||| |    ||||||||
Sbjct: 974  tagattgacaaatttgatagaggataagaaagtcgcccaaaagattgtatatggtggcca 1033

                                                                        
Query: 241  gacagatatggagcaactaaaaatagctcctacggtgctggtagatgttcctcttgatac 300
             ||||||  | |||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 1034 aacagatgagaagcaactaaaaatagctcctactgtgttgttagatgttcctcttgatac 1093

                                                                        
Query: 301  agaactcatgaagggggaaatatttggccccatgcttccaattataacggtcgacaagat 360
            |  |||||||   | |||||| ||||| ||| | ||||| ||| |||| || ||||||||
Sbjct: 1094 aacactcatggcagaggaaatttttggtcccttacttcccattgtaacagttgacaagat 1153

                                                                        
Query: 361  tgaagaaggcatcacgcacatcaacgccggggcgaagccactcgcggcctacctcttcac 420
            ||||||  |||||  |  ||||||| |  || | |||||||| || ||||| || |||||
Sbjct: 1154 tgaagatagcatccagttcatcaactcaaggaccaagccacttgcagcctatcttttcac 1213

                               
Query: 421  caaggacaagaaactgcaa 439
            |||||||||||||||||||
Sbjct: 1214 caaggacaagaaactgcaa 1232



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>gb|AY104932.1| Zea mays PCO147149 mRNA sequence
          Length = 2304

 Score =  131 bits (66), Expect = 3e-27
 Identities = 139/162 (85%), Gaps = 1/162 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgttggtaaatggggatgtaacaatggccg-gcatgcattgctccggattacatcataac 60
            |||||| ||||||||||| ||||| ||||  |||||||||||||| ||||||||||||||
Sbjct: 1206 tgttggcaaatggggatgcaacaacggccaagcatgcattgctccagattacatcataac 1265

                                                                        
Query: 61   gacaaaagcgtttgttacagagctggtcgactctttgaaaagagtcttggaaaggttcta 120
            ||||||| | ||||   | |||||||| | |||||| |||||||| ||||||||||||||
Sbjct: 1266 gacaaaatcatttgcaccggagctggtggcctctttcaaaagagttttggaaaggttcta 1325

                                                      
Query: 121  cggggaggatccgttgcaatcggcggacctgtctcgtattgt 162
             |||||||||||  || |||| || ||| |||||||||||||
Sbjct: 1326 tggggaggatcctctggaatcagcagacttgtctcgtattgt 1367



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 90/112 (80%)
 Strand = Plus / Plus

                                                                        
Query: 252  agcaactaaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatga 311
            |||||||||||||  |||||||  |  || |||||||||||   ||| ||||| | ||||
Sbjct: 1457 agcaactaaaaatttctcctacactattgttagatgttcctgaagattcagaaattatga 1516

                                                                
Query: 312  agggggaaatatttggccccatgcttccaattataacggtcgacaagattga 363
              || ||||||||||| ||| ||||||| ||| | |||||||| ||||||||
Sbjct: 1517 caggcgaaatatttgggcccttgcttcctattgtgacggtcgaaaagattga 1568



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>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08
              map MAP_LOC, complete sequence
          Length = 154839

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                          
Query: 89     gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148
              |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| |  |||
Sbjct: 140521 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 140580

                                                                          
Query: 149    ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208
               |||| |||||||| |||  || ||||||||   ||||  |||| ||| |||| ||||||
Sbjct: 140581 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 140640

                                
Query: 209    aaagtcgccgaaaagatt 226
              ||||||||| ||||||||
Sbjct: 140641 aaagtcgcccaaaagatt 140658



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 259    aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310
              ||||||||||||||| ||| || ||||||||||||||||||||  |||||||
Sbjct: 140783 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 140834



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 395    aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439
              |||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 141237 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 141281



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 73/87 (83%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                          
Query: 2      tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
              |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 140344 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 140403

                                         
Query: 61     gacaaaagcgtttgttacagagctggt 87
               |||||| | |||| | ||||||||||
Sbjct: 140404 aacaaaatcatttgctccagagctggt 140430



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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0009F15, complete sequence
          Length = 142289

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                         
Query: 89    gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148
             |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| |  |||
Sbjct: 10374 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 10433

                                                                         
Query: 149   ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208
              |||| |||||||| |||  || ||||||||   ||||  |||| ||| |||| ||||||
Sbjct: 10434 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 10493

                               
Query: 209   aaagtcgccgaaaagatt 226
             ||||||||| ||||||||
Sbjct: 10494 aaagtcgcccaaaagatt 10511



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 259   aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310
             ||||||||||||||| ||| || ||||||||||||||||||||  |||||||
Sbjct: 10636 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 10687



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 395   aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439
             |||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 11090 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 11134



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 73/87 (83%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
             |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 10197 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 10256

                                        
Query: 61    gacaaaagcgtttgttacagagctggt 87
              |||||| | |||| | ||||||||||
Sbjct: 10257 aacaaaatcatttgctccagagctggt 10283



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                           
Query: 89      gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148
               |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| |  |||
Sbjct: 4359011 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 4359070

                                                                           
Query: 149     ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208
                |||| |||||||| |||  || ||||||||   ||||  |||| ||| |||| ||||||
Sbjct: 4359071 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 4359130

                                 
Query: 209     aaagtcgccgaaaagatt 226
               ||||||||| ||||||||
Sbjct: 4359131 aaagtcgcccaaaagatt 4359148



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 259     aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310
               ||||||||||||||| ||| || ||||||||||||||||||||  |||||||
Sbjct: 4359273 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 4359324



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 395     aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439
               |||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 4359727 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 4359771



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 73/87 (83%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                           
Query: 2       tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
               |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 4358834 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 4358893

                                          
Query: 61      gacaaaagcgtttgttacagagctggt 87
                |||||| | |||| | ||||||||||
Sbjct: 4358894 aacaaaatcatttgctccagagctggt 4358920



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 115/138 (83%)
 Strand = Plus / Plus

                                                                           
Query: 89      gactctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggac 148
               |||||||| |||||||| ||| |||||||||| ||||||||||| |||||||| |  |||
Sbjct: 4367705 gactctttaaaaagagttttgaaaaggttctatggggaggatcctttgcaatcagaagac 4367764

                                                                           
Query: 149     ctgtctcgtattgtaaatattagccatttccaccgattagcaaagttgctagatgataag 208
                |||| |||||||| |||  || ||||||||   ||||  |||| ||| |||| ||||||
Sbjct: 4367765 ttgtcccgtattgtgaattctaaccatttccgtagattgacaaatttgatagaggataag 4367824

                                 
Query: 209     aaagtcgccgaaaagatt 226
               ||||||||| ||||||||
Sbjct: 4367825 aaagtcgcccaaaagatt 4367842



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 259     aaaaatagctcctacggtgctggtagatgttcctcttgatacagaactcatg 310
               ||||||||||||||| ||| || ||||||||||||||||||||  |||||||
Sbjct: 4367967 aaaaatagctcctactgtgttgttagatgttcctcttgatacaacactcatg 4368018



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 395     aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439
               |||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 4368421 aagccacttgcagcctatcttttcaccaaggacaagaaactgcaa 4368465



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 73/87 (83%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                           
Query: 2       tgttggtaaatggggatgtaacaatggcc-ggcatgcattgctccggattacatcataac 60
               |||||| || |||||||||||||| || | ||||||||||||||| || ||| | |||||
Sbjct: 4367528 tgttggcaagtggggatgtaacaacgggcaggcatgcattgctccagactacgttataac 4367587

                                          
Query: 61      gacaaaagcgtttgttacagagctggt 87
                |||||| | |||| | ||||||||||
Sbjct: 4367588 aacaaaatcatttgctccagagctggt 4367614



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>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                         
Query: 91    ctctttgaaaagagtcttggaaaggttctacggggaggatccgttgcaatcggcggacct 150
             |||||||||||||||||||| ||||||||| |||||||||||  ||||||| || ||| |
Sbjct: 14723 ctctttgaaaagagtcttggtaaggttctatggggaggatcctctgcaatcagcagactt 14782

                         
Query: 151   gtctcgtattgt 162
             ||||||||||||
Sbjct: 14783 gtctcgtattgt 14794



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 57/63 (90%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                         
Query: 2     tgttggtaaatggggatgtaacaatggccg-gcatgcattgctccggattacatcataac 60
             |||||| ||||||||||| ||||||||||  || ||||||||||| ||||||||||||||
Sbjct: 14531 tgttggcaaatggggatgcaacaatggccaagcgtgcattgctccagattacatcataac 14590

                
Query: 61    gac 63
             |||
Sbjct: 14591 gac 14593



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 395   aagccactcgcggcctacctcttcaccaaggacaagaaactgcaa 439
             ||||||||||| |||||||| ||||||||| ||||||| ||||||
Sbjct: 15414 aagccactcgctgcctaccttttcaccaagaacaagaagctgcaa 15458



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                           
Query: 284     gatgttcctcttgatacagaactcatgaagggggaaatatttggccccatgcttccaatt 343
               ||||||||||||||| |||   ||||||||| |||||| ||||||||| ||||||| || 
Sbjct: 3953672 gatgttcctcttgattcagggatcatgaaggaggaaatctttggccccttgcttcctatc 3953731

                       
Query: 344     ataacggt 351
               ||||||||
Sbjct: 3953732 ataacggt 3953739



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 407     gcctacctcttcaccaaggaca 428
               ||||||||||||||||||||||
Sbjct: 3953926 gcctacctcttcaccaaggaca 3953947



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                           
Query: 284     gatgttcctcttgatacagaactcatgaagggggaaatatttggccccatgcttccaatt 343
               ||||||||||||||| |||   ||||||||| |||||| ||||||||| ||||||| || 
Sbjct: 3953646 gatgttcctcttgattcagggatcatgaaggaggaaatctttggccccttgcttcctatc 3953705

                       
Query: 344     ataacggt 351
               ||||||||
Sbjct: 3953706 ataacggt 3953713



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 407     gcctacctcttcaccaaggaca 428
               ||||||||||||||||||||||
Sbjct: 3953900 gcctacctcttcaccaaggaca 3953921



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>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152090

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                          
Query: 284    gatgttcctcttgatacagaactcatgaagggggaaatatttggccccatgcttccaatt 343
              ||||||||||||||| |||   ||||||||| |||||| ||||||||| ||||||| || 
Sbjct: 115648 gatgttcctcttgattcagggatcatgaaggaggaaatctttggccccttgcttcctatc 115707

                      
Query: 344    ataacggt 351
              ||||||||
Sbjct: 115708 ataacggt 115715



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 407    gcctacctcttcaccaaggaca 428
              ||||||||||||||||||||||
Sbjct: 115902 gcctacctcttcaccaaggaca 115923



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>gb|AC125211.4| Mus musculus BAC clone RP23-128E9 from chromosome 6, complete sequence
          Length = 193979

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 274   ggtgctggtagatgttcctcttgata 299
             ||||||||||||||||||||| ||||
Sbjct: 94255 ggtgctggtagatgttcctctggata 94280



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>gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome 3, complete sequence
          Length = 181261

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 327    gccccatgcttccaattataa 347
              |||||||||||||||||||||
Sbjct: 144967 gccccatgcttccaattataa 144947



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>gb|AC100794.2| Homo sapiens chromosome 18, clone CTD-2559F21, complete sequence
          Length = 143575

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 159    ttgtaaatattagccatttcc 179
              |||||||||||||||||||||
Sbjct: 115962 ttgtaaatattagccatttcc 115982



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>gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, complete sequence
          Length = 179544

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   ttgtaaatattagccatttcc 179
             |||||||||||||||||||||
Sbjct: 20909 ttgtaaatattagccatttcc 20929



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>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence
          Length = 192476

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   aaactgcaacaagatttcgt 450
             ||||||||||||||||||||
Sbjct: 71634 aaactgcaacaagatttcgt 71653



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   aaactgcaacaagatttcgt 450
             ||||||||||||||||||||
Sbjct: 68702 aaactgcaacaagatttcgt 68721



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>ref|XM_652793.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0281.2), mRNA
          Length = 1362

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 400  actcgcggcctacctcttcaccaa 423
            ||||||||||||||||||| ||||
Sbjct: 1035 actcgcggcctacctcttctccaa 1058



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>ref|XM_985464.1| PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6, transcript
            variant 5 (Ercc6), mRNA
          Length = 6598

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 6321 agcaaagttgctagatgata 6302



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>ref|XM_899152.2| PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6, transcript
            variant 4 (Ercc6), mRNA
          Length = 6715

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 6438 agcaaagttgctagatgata 6419



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>ref|XM_484360.4| PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6, transcript
            variant 1 (Ercc6), mRNA
          Length = 8422

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 8145 agcaaagttgctagatgata 8126



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>ref|XM_986718.1| PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6, transcript
            variant 9 (Ercc6), mRNA
          Length = 6598

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 6321 agcaaagttgctagatgata 6302



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>ref|XM_922393.2| PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6, transcript
            variant 8 (Ercc6), mRNA
          Length = 6715

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 6438 agcaaagttgctagatgata 6419



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>ref|XM_912465.2| PREDICTED: Mus musculus excision repair cross-complementing rodent
            repair deficiency, complementation group 6, transcript
            variant 5 (Ercc6), mRNA
          Length = 8422

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 8145 agcaaagttgctagatgata 8126



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>gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosome 18, complete
             sequence
          Length = 142250

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ttgaaaagagtcttggaaag 114
             ||||||||||||||||||||
Sbjct: 13217 ttgaaaagagtcttggaaag 13198



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>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 472    catgctcgtcaacgacgtcgccct 495
              ||||||||||||||||||| ||||
Sbjct: 125848 catgctcgtcaacgacgtctccct 125825



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>gb|AC123951.3| Mus musculus BAC clone RP23-166M23 from 18, complete sequence
          Length = 220088

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ttgaaaagagtcttggaaag 114
              ||||||||||||||||||||
Sbjct: 193342 ttgaaaagagtcttggaaag 193323



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>gb|AC150981.14| Medicago truncatula clone mth2-166m22, complete sequence
          Length = 116485

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   aagtcgccgaaaagattctg 229
             ||||||||||||||||||||
Sbjct: 77323 aagtcgccgaaaagattctg 77342



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>gb|AC055822.10| Homo sapiens chromosome 8, clone RP11-707M3, complete sequence
          Length = 202033

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    caacaagatttcgtctcaaa 456
              ||||||||||||||||||||
Sbjct: 126015 caacaagatttcgtctcaaa 126034



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     gtgctggtagatgttcctct 294
               ||||||||||||||||||||
Sbjct: 5004471 gtgctggtagatgttcctct 5004452



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>dbj|AK139396.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830042P19 product:unclassifiable, full
            insert sequence
          Length = 3167

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  agcaaagttgctagatgata 206
            ||||||||||||||||||||
Sbjct: 2875 agcaaagttgctagatgata 2856



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>gb|AC079052.4| Homo sapiens chromosome 18, clone RP11-142I20, complete sequence
          Length = 164220

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 426   acaagaaactgcaacaagat 445
             ||||||||||||||||||||
Sbjct: 75217 acaagaaactgcaacaagat 75198



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>gb|AF260011.2|AF260011 Homo sapiens chromosome 21 clone PAC H08866 map 21q22.1, complete
             sequence
          Length = 113729

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gatatggagcaactaaaaat 264
             ||||||||||||||||||||
Sbjct: 96153 gatatggagcaactaaaaat 96172



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>dbj|BS000169.1| Pan troglodytes chromosome 22 clone:RP43-042E01, map 22, complete
              sequences
          Length = 228269

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    gatatggagcaactaaaaat 264
              ||||||||||||||||||||
Sbjct: 181232 gatatggagcaactaaaaat 181251



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>emb|AL163248.2|HS21C048 Homo sapiens chromosome 21 segment HS21C048
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    gatatggagcaactaaaaat 264
              ||||||||||||||||||||
Sbjct: 331993 gatatggagcaactaaaaat 332012



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>gb|AC154412.3| Mus musculus BAC clone RP24-225G4 from 14, complete sequence
          Length = 182048

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    agcaaagttgctagatgata 206
              ||||||||||||||||||||
Sbjct: 165304 agcaaagttgctagatgata 165285



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>gb|AF109131.1|AF109131 Sinorhizobium meliloti homogentisate dioxygenase (hmgA) and
            maleylacetoacetate isomerase (maiA) genes, complete cds;
            and unknown gene
          Length = 3256

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 472  catgctcgtcaacgacgtcgccct 495
            ||||||||||||||||||| ||||
Sbjct: 2001 catgctcgtcaacgacgtctccct 2024



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>emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chromosome 14, complete
              sequence
          Length = 215157

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    agcaaagttgctagatgata 206
              ||||||||||||||||||||
Sbjct: 181556 agcaaagttgctagatgata 181575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,722,427
Number of Sequences: 3902068
Number of extensions: 3722427
Number of successful extensions: 61957
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61759
Number of HSP's gapped (non-prelim): 184
length of query: 525
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 502
effective length of database: 17,143,297,704
effective search space: 8605935447408
effective search space used: 8605935447408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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