ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4n02 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 214 bits (545), Expect = 8e-56 Identities = 103/106 (97%), Positives = 104/106 (98%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 + RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD Sbjct: 359 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 418 Query: 204 AMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 341 AMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 419 AMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 167 bits (422), Expect = 2e-41 Identities = 78/106 (73%), Positives = 92/106 (86%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 + RLVNSR+GP FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN D Sbjct: 369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANAD 428 Query: 204 AMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 341 A+ G+FYGKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 429 AIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 162 bits (409), Expect = 5e-40 Identities = 78/109 (71%), Positives = 91/109 (83%), Gaps = 2/109 (1%) Frame = +3 Query: 21 TLAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQ 200 T+ +LVNS++GP +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN Sbjct: 368 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANN 427 Query: 201 DAMKTGSFYGKGAQQ--GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 341 DA+K G+FYG A Q G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 428 DAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 161 bits (408), Expect = 6e-40 Identities = 75/101 (74%), Positives = 89/101 (88%) Frame = +3 Query: 33 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 212 +LVNS+DGP FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ Sbjct: 370 KLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAID 429 Query: 213 TGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 335 G+F+GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 430 RGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 119 bits (299), Expect = 3e-27 Identities = 55/70 (78%), Positives = 65/70 (92%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 ++ RLVNSR+GP TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN D Sbjct: 356 ISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDD 415 Query: 204 AMKTGSFYGK 233 AMKTG+FYGK Sbjct: 416 AMKTGAFYGK 425
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 115 bits (287), Expect = 7e-26 Identities = 53/70 (75%), Positives = 64/70 (91%) Frame = +3 Query: 21 TLAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQ 200 ++ +LVNS++GP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN Sbjct: 368 SIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANS 427 Query: 201 DAMKTGSFYG 230 DAM TG+FYG Sbjct: 428 DAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 114 bits (285), Expect = 1e-25 Identities = 53/69 (76%), Positives = 63/69 (91%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 + RLVNSR+GP FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN D Sbjct: 359 IGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSD 418 Query: 204 AMKTGSFYG 230 AMKTGSFYG Sbjct: 419 AMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 112 bits (280), Expect = 4e-25 Identities = 51/68 (75%), Positives = 64/68 (94%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 +A +LVNS++GP TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+D Sbjct: 365 IARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANED 424 Query: 204 AMKTGSFY 227 AMKTGSF+ Sbjct: 425 AMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 109 bits (272), Expect = 4e-24 Identities = 50/68 (73%), Positives = 63/68 (92%) Frame = +3 Query: 21 TLAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQ 200 T+ +LVNS++GP TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQ Sbjct: 368 TIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQ 427 Query: 201 DAMKTGSF 224 DA+K G+F Sbjct: 428 DAIKRGTF 435
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 105 bits (263), Expect = 4e-23 Identities = 50/67 (74%), Positives = 60/67 (89%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 + +L+NS DGP TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN D Sbjct: 373 IGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANAD 432 Query: 204 AMKTGSF 224 A+ TG+F Sbjct: 433 AINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 105 bits (261), Expect = 7e-23 Identities = 49/68 (72%), Positives = 59/68 (86%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 + +L+NS DGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN D Sbjct: 373 IGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANAD 432 Query: 204 AMKTGSFY 227 A+ GSF+ Sbjct: 433 AINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 105 bits (261), Expect = 7e-23 Identities = 49/65 (75%), Positives = 59/65 (90%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQD 203 + +L+NSRDGP TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN D Sbjct: 368 IGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANAD 427 Query: 204 AMKTG 218 A+ TG Sbjct: 428 AINTG 432
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 102 bits (254), Expect = 5e-22 Identities = 45/65 (69%), Positives = 63/65 (96%) Frame = +3 Query: 33 RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK 212 +LVNS++GP TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K Sbjct: 374 KLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIK 433 Query: 213 TGSFY 227 +GSF+ Sbjct: 434 SGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 99.4 bits (246), Expect = 4e-21 Identities = 45/69 (65%), Positives = 62/69 (89%) Frame = +3 Query: 21 TLAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQ 200 ++ +LVNS++GP TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+ Sbjct: 372 SVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANE 431 Query: 201 DAMKTGSFY 227 DA+K+GSF+ Sbjct: 432 DAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 67.0 bits (162), Expect = 2e-11 Identities = 30/44 (68%), Positives = 38/44 (86%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 155 + LVNS++ P TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 366 IGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/54 (48%), Positives = 35/54 (64%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 185 + +LVN+R V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 342 IGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 42.0 bits (97), Expect = 7e-04 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +3 Query: 24 LAXRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 167 ++ R+VNS +GP F++P T+ L+E + +V EQ ++ QL D Y Sbjct: 242 VSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 23) (DHHC-23) Length = 409 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = -3 Query: 268 PSGTGKVPCCAPLP*KEPVFIASWLASPRAAWLM*VSASCT-RLTLSCSWTSMCPYSSSF 92 P G+ K+P +P KE L P AW + C R+ C W + C S+ Sbjct: 242 PKGSSKMPAGSPTKAKEDWCAKCQLVRPARAWRCRICGICVRRMDHHCVWINSCVGESNH 301 Query: 91 STVI 80 I Sbjct: 302 QAFI 305
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 48 RDGPVTFEQPKMTVEK 95 R+GP TFEQP MT+EK Sbjct: 17 REGPPTFEQPAMTIEK 32
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 163 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 59 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier| family 20 member 1-B) Length = 685 Score = 29.6 bits (65), Expect = 3.8 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -2 Query: 338 GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQSCLAHV 165 G++ ++AP W++VLG ++ F G + + SF GT++ +V++ Q+C+ Sbjct: 15 GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL-- 69 Query: 164 GVSKLHTLDIVLL 126 S T+ VLL Sbjct: 70 -ASIFETVGSVLL 81
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = +2 Query: 215 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 322 +FL R RS R AR R K Q LRPNG E+RR Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169
>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +3 Query: 120 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 287 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +3 Query: 120 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 287 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +3 Query: 120 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 287 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = +3 Query: 120 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 287 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>BGS4_SCHPO (O74475) 1,3-beta-glucan synthase component bgs4 (EC 2.4.1.34)| (1,3-beta-D-glucan-UDP glucosyltransferase) Length = 1955 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = +3 Query: 120 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYD 299 V + N + Q AD Y ++ L A+ D+M YG+G P G T+ Y Sbjct: 28 VYDDQNAYQRQPADAYSNEEFLDQADYDSM-----YGEG--YNGYDYPTGVTESYGDEYT 80 Query: 300 PTARSDDGSCLYT 338 P + G Y+ Sbjct: 81 PVDTASSGINQYS 93
>S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (Solute carrier| family 20 member 1) Length = 685 Score = 28.5 bits (62), Expect = 8.4 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -2 Query: 356 KVACLKGVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQ 183 +V G++ ++ P W++VLG ++ F G + + SF GT++ +V++ Q Sbjct: 9 EVTSALGIENVKIMEPFLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQ 65 Query: 182 SCLAHVGVSKLHTLDIVLL 126 +C+ S T+ VLL Sbjct: 66 ACIL---ASIFETVGSVLL 81
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -1 Query: 324 CRRRSLPLGRSSWHFGRCNLP 262 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,558,341 Number of Sequences: 219361 Number of extensions: 1133715 Number of successful extensions: 3009 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2949 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3008 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
