ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4n02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 831 bits (419), Expect = 0.0 Identities = 440/443 (99%), Gaps = 3/443 (0%) Strand = Plus / Plus Query: 1 gctctaccggnaatcgagnaacattggcaagnaggctggtgaactcgcgggacgggcccg 60 |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 941 gctctaccgg-aatcgag-aacattggcaag-aggctggtgaactcgcgggacgggcccg 997 Query: 61 tgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 998 tgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcg 1057 Query: 121 tccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1058 tccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcag 1117 Query: 181 ctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggtaaaggagcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1118 ctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggtaaaggagcac 1177 Query: 241 agcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1178 agcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacc 1237 Query: 301 caacggcaaggagcgacgacggcagctgcctttacaccttttaagcatgccacttttaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1238 caacggcaaggagcgacgacggcagctgcctttacaccttttaagcatgccacttttaat 1297 Query: 361 atctgatgttttacctacctaagtccgcatcgcatccaagcgattgctgggcatgttttg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 atctgatgttttacctacctaagtccgcatcgcatccaagcgattgctgggcatgttttg 1357 Query: 421 ttaatatatctctaaatatattg 443 ||||||||||||||||||||||| Sbjct: 1358 ttaatatatctctaaatatattg 1380
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 454 bits (229), Expect = e-124 Identities = 311/337 (92%), Gaps = 1/337 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 ||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct: 1154 aacatcggcaag-aggctggtgaactcgcgggacggacccgtcaccttcgagcagcccaa 1212 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| || |||||| |||| |||||||| |||||||| |||||||||||||||||||| Sbjct: 1213 gatgacggtggagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgt 1272 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | Sbjct: 1273 caagcgtgtgcagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaa 1332 Query: 200 ggatgcgatgaagactggttccttctacggtaaaggagcacagcaaggtactttgcccgt 259 |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 1333 ggatgccatgaagactggttccttctacggtaaaggagcacaacaaggcactttgcctgt 1392 Query: 260 gccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacga 319 |||||||||||| ||||||| |||||||||||| ||||||||| || ||||||||||| Sbjct: 1393 gccggaaggttgtaccgaccgggatgccaagaacttcgacccaaccgcgaggagcgacga 1452 Query: 320 cggcagctgcctttacaccttttaagcatgccacttt 356 ||||||||||||||||||||||||||||||||||||| Sbjct: 1453 cggcagctgcctttacaccttttaagcatgccacttt 1489
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 428 bits (216), Expect = e-117 Identities = 216/216 (100%) Strand = Plus / Plus Query: 228 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7525 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 7584 Query: 288 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7585 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 7644 Query: 348 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7645 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 7704 Query: 408 tgggcatgttttgttaatatatctctaaatatattg 443 |||||||||||||||||||||||||||||||||||| Sbjct: 7705 tgggcatgttttgttaatatatctctaaatatattg 7740 Score = 408 bits (206), Expect = e-111 Identities = 227/230 (98%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 1 gctctaccggnaatcgagnaacattggcaagnaggctggtgaactcgcgggacgggcccg 60 |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 7079 gctctaccgg-aatcgag-aacattggcaag-aggctggtgaactcgcgggacgggcccg 7135 Query: 61 tgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7136 tgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcg 7195 Query: 121 tccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7196 tccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcag 7255 Query: 181 ctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 230 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7256 ctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 7305 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||| ||||| |||||||| | |||||||| | |||||||| |||||||| |||||| Sbjct: 3873 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 3932 Query: 126 gagcaggacaatgtcaagcgtgtgcagct 154 |||||||| || ||||||||||||||||| Sbjct: 3933 gagcaggagaacgtcaagcgtgtgcagct 3961
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 408 bits (206), Expect = e-111 Identities = 227/230 (98%), Gaps = 3/230 (1%) Strand = Plus / Plus Query: 1 gctctaccggnaatcgagnaacattggcaagnaggctggtgaactcgcgggacgggcccg 60 |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 1196 gctctaccgg-aatcgag-aacattggcaag-aggctggtgaactcgcgggacgggcccg 1252 Query: 61 tgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 tgaccttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcg 1312 Query: 121 tccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1313 tccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcag 1372 Query: 181 ctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 230 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1373 ctctgggtgatgctaaccaggatgcgatgaagactggttccttctacggt 1422 Score = 377 bits (190), Expect = e-101 Identities = 211/214 (98%), Gaps = 3/214 (1%) Strand = Plus / Plus Query: 228 ggtaaaggagcacagcaaggtactttgcccg-tgccggaaggttgcaccgaccaaaatgc 286 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1471 ggtaaaggagcacagcaaggtactttgcccgatgccggaaggttgcaccgaccaaaatgc 1530 Query: 287 caagaactacgacccaacggcaaggagcgacg-acggcagctgcctttacaccttttaag 345 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1531 caagaactacgacccaacggcaaggagcgacgaacggcagctgcctttacaccttttaag 1590 Query: 346 catgccacttttaatatctgatgttttacctac-ctaagtccgcatcgcatccaagcgat 404 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1591 catgccacttttaatatctgatgttttacctacactaagtccgcatcgcatccaagcgat 1650 Query: 405 tgctgggcatgttttgttaatatatctctaaata 438 |||||||||||||||||||||||||||||||||| Sbjct: 1651 tgctgggcatgttttgttaatatatctctaaata 1684
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 365 bits (184), Expect = 8e-98 Identities = 205/211 (97%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| || || ||||||||||||||||| || |||||||| ||||||||||| Sbjct: 77 aacattggcaagaag-cttgtgaactcgcgggacggaccagtgacctttgagcagccaaa 135 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 195 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 255 Query: 200 ggatgcgatgaagactggttccttctacggt 230 ||||||||||||||||||||||||||||||| Sbjct: 256 ggatgcgatgaagactggttccttctacggt 286
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 357 bits (180), Expect = 2e-95 Identities = 204/211 (96%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| || |||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 283 aacattggcaagaag-ctggtgaactcgcgggacggaccagtgacctttgagcagccaaa 341 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 gatgacagtggagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 401 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 461 Query: 200 ggatgcgatgaagactggttccttctacggt 230 ||||||||||||||||||| ||||||||||| Sbjct: 462 ggatgcgatgaagactggtaccttctacggt 492 Score = 246 bits (124), Expect = 5e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Plus Query: 228 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 287 |||||||| |||||||||||||||||||| || |||| ||| ||||||||||| | |||| Sbjct: 540 ggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgcaccgaccagactgcc 599 Query: 288 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 347 ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 600 aagaacttcgacccaacggcgaggagtgacgacggcagctgcctttacaccttttaagca 659 Query: 348 tgccacttttaatatctgatgttttacc-----tacctaagt-ccgcatcgcatccaagc 401 ||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 660 tgcca-atttaatatctgatgttttatcctttgtacctaagtaccgcatcgcatccaagc 718 Query: 402 gattgctgggcatgttttgttaatatat 429 |||||||||||||||||||||||||||| Sbjct: 719 gattgctgggcatgttttgttaatatat 746
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 357 bits (180), Expect = 2e-95 Identities = 204/211 (96%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| || |||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 1133 aacattggcaagaag-ctggtgaactcgcgggacggaccagtgacctttgagcagccaaa 1191 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1192 gatgacagtggagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 1251 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1252 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 1311 Query: 200 ggatgcgatgaagactggttccttctacggt 230 ||||||||||||||||||| ||||||||||| Sbjct: 1312 ggatgcgatgaagactggtaccttctacggt 1342 Score = 246 bits (124), Expect = 5e-62 Identities = 189/208 (90%), Gaps = 7/208 (3%) Strand = Plus / Plus Query: 228 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 287 |||||||| |||||||||||||||||||| || |||| ||| ||||||||||| | |||| Sbjct: 1390 ggtaaaggggcacagcaaggtactttgcctgtaccggcaggatgcaccgaccagactgcc 1449 Query: 288 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 347 ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 1450 aagaacttcgacccaacggcgaggagtgacgacggcagctgcctttacaccttttaagca 1509 Query: 348 tgccacttttaatatctgatgttttacc-----tacctaagt-ccgcatcgcatccaagc 401 ||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| Sbjct: 1510 tgcca-atttaatatctgatgttttatcctttgtacctaagtaccgcatcgcatccaagc 1568 Query: 402 gattgctgggcatgttttgttaatatat 429 |||||||||||||||||||||||||||| Sbjct: 1569 gattgctgggcatgttttgttaatatat 1596
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 283 bits (143), Expect = 2e-73 Identities = 195/211 (92%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 ||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct: 1144 aacatcggcaag-aggctggtgaactcgcgggacggacccgtcaccttcgagcagcccaa 1202 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| || |||||| |||| |||||||| |||||||| |||||||||||||||||||| Sbjct: 1203 gatgacggtggagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgt 1262 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| | Sbjct: 1263 caagcgtgtgcagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaa 1322 Query: 200 ggatgcgatgaagactggttccttctacggt 230 |||||| |||||||||||||||||||||||| Sbjct: 1323 ggatgccatgaagactggttccttctacggt 1353 Score = 180 bits (91), Expect = 3e-42 Identities = 171/195 (87%), Gaps = 7/195 (3%) Strand = Plus / Plus Query: 228 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 287 |||||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||| Sbjct: 1399 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1458 Query: 288 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 347 ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 1459 aagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagca 1518 Query: 348 tgccacttttaata-tctgatgttttac-----ctacctaag-tccgcatcgcatccaag 400 ||||||||| | || |||||||||| || |||||||| ||||||||||| |||| Sbjct: 1519 tgccactttaattattctgatgtttcactctttgtacctaagcaccgcatcgcatacaag 1578 Query: 401 cgattgctgggcatg 415 ||| ||||||||||| Sbjct: 1579 cgactgctgggcatg 1593
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 216 bits (109), Expect = 5e-53 Identities = 277/331 (83%), Gaps = 4/331 (1%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1101 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1159 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1160 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1219 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1220 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1279 Query: 200 ggatgcgatgaagactggttccttctacggtaaaggagcacagcaag---gtactttgcc 256 || || ||||||||||||||||||||||| ||||||||||||||| ||| |||| Sbjct: 1280 cgacgccatgaagactggttccttctacgggcaaggagcacagcaagcaggtaacctgcc 1339 Query: 257 cgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcga 316 |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| Sbjct: 1340 tgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgaggagcga 1399 Query: 317 cgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||| Sbjct: 1400 cgacggcagctgcctttacaccttttaagca 1430
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 216 bits (109), Expect = 5e-53 Identities = 277/331 (83%), Gaps = 4/331 (1%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1136 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1194 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1195 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1254 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1255 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1314 Query: 200 ggatgcgatgaagactggttccttctacggtaaaggagcacagcaag---gtactttgcc 256 || || ||||||||||||||||||||||| ||||||||||||||| ||| |||| Sbjct: 1315 cgacgccatgaagactggttccttctacgggcaaggagcacagcaagcaggtaacctgcc 1374 Query: 257 cgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcga 316 |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| Sbjct: 1375 tgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgaggagcga 1434 Query: 317 cgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||| Sbjct: 1435 cgacggcagctgcctttacaccttttaagca 1465
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 107252 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 107193 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 107192 gcgacgacggcagctgcctttacaccttttaagca 107158 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 108519 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 108461 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 108460 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 108401 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 108400 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 108341 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 108340 cgacgccatgaagactggttccttctacggt 108310 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 255 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 314 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 112127 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 112068 Query: 315 gacgacggcagctgc 329 ||||||||||||||| Sbjct: 112067 gacgacggcagctgc 112053
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 29133 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 29074 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 29073 gcgacgacggcagctgcctttacaccttttaagca 29039 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 30396 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 30338 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 30337 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 30278 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 30277 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 30218 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 30217 cgacgccatgaagactggttccttctacggt 30187 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 255 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 314 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 34004 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 33945 Query: 315 gacgacggcagctgc 329 ||||||||||||||| Sbjct: 33944 gacgacggcagctgc 33930
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1426 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1485 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1486 gcgacgacggcagctgcctttacaccttttaagca 1520 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1106 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1164 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1165 gatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaacgt 1224 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1225 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1284 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1285 cgacgccatgaagactggttccttctacggt 1315
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 28302395 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28302336 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 28302335 gcgacgacggcagctgcctttacaccttttaagca 28302301 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 28303658 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 28303600 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 28303599 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 28303540 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 28303539 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 28303480 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 28303479 cgacgccatgaagactggttccttctacggt 28303449 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 255 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 314 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 28307266 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28307207 Query: 315 gacgacggcagctgc 329 ||||||||||||||| Sbjct: 28307206 gacgacggcagctgc 28307192
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1420 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1479 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1480 gcgacgacggcagctgcctttacaccttttaagca 1514 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1100 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1158 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1159 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1218 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1219 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1278 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1279 cgacgccatgaagactggttccttctacggt 1309
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1458 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1517 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1518 gcgacgacggcagctgcctttacaccttttaagca 1552 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1138 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1196 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1197 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1256 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1257 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1316 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1317 cgacgccatgaagactggttccttctacggt 1347
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1457 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1516 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1517 gcgacgacggcagctgcctttacaccttttaagca 1551 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1137 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1195 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1196 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1255 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1256 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1315 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1316 cgacgccatgaagactggttccttctacggt 1346
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1241 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1300 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1301 gcgacgacggcagctgcctttacaccttttaagca 1335 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 921 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 979 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 980 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1039 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1040 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1099 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1100 cgacgccatgaagactggttccttctacggt 1130
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 28284844 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28284785 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 28284784 gcgacgacggcagctgcctttacaccttttaagca 28284750 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 28286107 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 28286049 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 28286048 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 28285989 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 28285988 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 28285929 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 28285928 cgacgccatgaagactggttccttctacggt 28285898 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 255 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 314 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 28289715 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28289656 Query: 315 gacgacggcagctgc 329 ||||||||||||||| Sbjct: 28289655 gacgacggcagctgc 28289641
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 133 bits (67), Expect = 6e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1462 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1521 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1522 gcgacgacggcagctgcctttacaccttttaagca 1556 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1142 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1200 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1201 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1260 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1261 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1320 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1321 cgacgccatgaagactggttccttctacggt 1351
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 5 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 64 Query: 313 gcgacgacggcagctgcctttacaccttt 341 ||||||||||||||||||||||||||||| Sbjct: 65 gcgacgacggcagctgcctttacaccttt 93
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 117 bits (59), Expect = 3e-23 Identities = 87/95 (91%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| ||||||||| | |||||||||||| |||| Sbjct: 1469 tgcctgtgccggaaggttgcaccgaccctgttgccaagaatt-cgacccaacggcgagga 1527 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 ||||||||||||||||||||||||||||||||||| Sbjct: 1528 gcgacgacggcagctgcctttacaccttttaagca 1562 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 1149 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 1207 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 1208 gatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaacgt 1267 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 1268 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 1327 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 1328 cgacgccatgaagactggttccttctacggt 1358
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 107 bits (54), Expect = 3e-20 Identities = 159/194 (81%) Strand = Plus / Plus Query: 33 aggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgag 92 |||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| | || Sbjct: 807 aggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctggac 866 Query: 93 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 152 |||||||| |||||||| ||||||| || ||||||||||| || || ||| | |||||| Sbjct: 867 aagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagggtgcag 926 Query: 153 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 212 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 927 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 986 Query: 213 actggttccttcta 226 ||||| |||||||| Sbjct: 987 actggatccttcta 1000 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 264 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 323 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1076 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1135 Query: 324 agctgcctttacac 337 |||||||| ||||| Sbjct: 1136 agctgcctgtacac 1149
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 107 bits (54), Expect = 3e-20 Identities = 159/194 (81%) Strand = Plus / Plus Query: 33 aggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgag 92 |||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| | || Sbjct: 1001 aggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctggac 1060 Query: 93 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 152 |||||||| |||||||| ||||||| || ||||||||||| || || ||| | |||||| Sbjct: 1061 aagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagggtgcag 1120 Query: 153 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 212 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 1121 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 1180 Query: 213 actggttccttcta 226 ||||| |||||||| Sbjct: 1181 actggatccttcta 1194 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 264 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 323 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1232 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1291 Query: 324 agctgcctttacac 337 |||||||| ||||| Sbjct: 1292 agctgcctgtacac 1305
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 101 bits (51), Expect = 2e-18 Identities = 172/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 20 aacattggcaagnaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaa 79 |||||||||||| ||||||||||||||| |||| || || | ||||||||||| || Sbjct: 355 aacattggcaag-aggctggtgaactcgagggagggcccaccggagttcgagcagcccaa 413 Query: 80 gatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgt 139 |||||| |||| ||||| | |||||||| ||||||| || |||||||||| || || Sbjct: 414 gatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaacgt 473 Query: 140 caagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaacca 199 ||||||||||||||| ||||| ||| ||||| |||| ||||| ||||| |||||| Sbjct: 474 caagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaactc 533 Query: 200 ggatgcgatgaagactggttccttctacggt 230 || || |||||||||||||||||||||||| Sbjct: 534 cgacgccatgaagactggttccttctacggt 564
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||| |||||| ||||||||||| |||||||||||| |||| Sbjct: 41 tgcctgtgccggaaggttgacccgaccctgttgccaagaacttcgacccaacggcgagga 100 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 |||||||||||||||||||||| | |||||||||| Sbjct: 101 gcgacgacggcagctgcctttaaaacttttaagca 135
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||||||||| ||||| || |||||||||| | |||||||| |||||||| || | Sbjct: 760 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 819 Query: 126 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 185 |||||||| || ||||||||||||||||||||||||| ||| | | | |||| ||||| Sbjct: 820 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 879 Query: 186 ggtgatgctaaccaggatgcgatgaagactggttccttct 225 ||||| || ||| |||| || ||||||||||| ||||||| Sbjct: 880 ggtgaagccaacgaggacgccatgaagactggctccttct 919
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||||||||| ||||| || |||||||||| | |||||||| |||||||| || | Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214 Query: 126 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 185 |||||||| || ||||||||||||||||||||||||| ||| | | | |||| ||||| Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274 Query: 186 ggtgatgctaaccaggatgcgatgaagactggttccttct 225 ||||| || ||| |||| || ||||||||||| ||||||| Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 1e-16 Identities = 132/160 (82%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||||||||| ||||| || |||||||||| | |||||||| |||||||| || | Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214 Query: 126 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 185 |||||||| || ||||||||||||||||||||||||| ||| | | | |||| ||||| Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274 Query: 186 ggtgatgctaaccaggatgcgatgaagactggttccttct 225 ||||| || ||| |||| || ||||||||||| ||||||| Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 91.7 bits (46), Expect = 2e-15 Identities = 157/194 (80%) Strand = Plus / Plus Query: 33 aggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgag 92 |||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| | || Sbjct: 1108 aggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctggac 1167 Query: 93 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 152 |||||||| |||||||| | ||||| || ||||| ||||| || || ||| | |||||| Sbjct: 1168 aagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtgcag 1227 Query: 153 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 212 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 1228 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 1287 Query: 213 actggttccttcta 226 ||||| |||||||| Sbjct: 1288 actggatccttcta 1301 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 264 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 323 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1377 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1436 Query: 324 agctgcctttacac 337 |||||||| ||||| Sbjct: 1437 agctgcctgtacac 1450
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 91.7 bits (46), Expect = 2e-15 Identities = 157/194 (80%) Strand = Plus / Plus Query: 33 aggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgag 92 |||||||||||||||| ||| ||||| ||| |||| |||||| |||||||| | || Sbjct: 971 aggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctggac 1030 Query: 93 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 152 |||||||| |||||||| | ||||| || ||||| ||||| || || ||| | |||||| Sbjct: 1031 aagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtgcag 1090 Query: 153 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 212 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 1091 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 1150 Query: 213 actggttccttcta 226 ||||| |||||||| Sbjct: 1151 actggatccttcta 1164 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 264 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 323 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1202 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1261 Query: 324 agctgcctttacac 337 |||||||| ||||| Sbjct: 1262 agctgcctgtacac 1275
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||| ||||| |||||||| | |||||||| | |||||||| |||||||| |||||| Sbjct: 1304 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 1363 Query: 126 gagcaggacaatgtcaagcgtgtgcagct 154 |||||||| || ||||||||||||||||| Sbjct: 1364 gagcaggagaacgtcaagcgtgtgcagct 1392
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 7e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 93 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 152 |||||||||||||| || ||||||| |||||||||||||||||||| ||| | || || Sbjct: 3 aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62 Query: 153 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 208 || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| |||| Sbjct: 63 ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct: 4541319 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 4541378 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 || ||||| ||| ||||||||||||||| |||||| Sbjct: 4541379 gcaacgacagcatctgcctttacaccttctaagca 4541413
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 253 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 312 |||| |||||||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct: 84693 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 84752 Query: 313 gcgacgacggcagctgcctttacaccttttaagca 347 || ||||| ||| ||||||||||||||| |||||| Sbjct: 84753 gcaacgacagcatctgcctttacaccttctaagca 84787
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||| ||||| |||||||| |||||||||| | |||||||| |||||||| |||||| Sbjct: 1154 ttcgaccagcccaagatgaccatcgagaagctcatggagtacggccacatgctggtccag 1213 Query: 126 gagcaggacaatgtcaagcgtgtgcagct 154 |||||||| || || ||||| |||||||| Sbjct: 1214 gagcaggagaacgtgaagcgcgtgcagct 1242
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 1e-04 Identities = 106/132 (80%) Strand = Plus / Plus Query: 66 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 125 ||||||||||| |||||||| |||| ||||| || |||||||| ||||||| ||||| Sbjct: 1232 ttcgagcagccgaagatgactatcgaaaagctcctcgagtacggaaacatgcttgtccaa 1291 Query: 126 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 185 ||||| || ||||| ||| | || || | ||||| | ||| ||||| |||| ||||| Sbjct: 1292 gagcaagagaatgtgaagagagttcaattggctgataagtacttgagcgaggctgctctt 1351 Query: 186 ggtgatgctaac 197 |||||||||||| Sbjct: 1352 ggtgatgctaac 1363
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Plus Query: 156 gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 205 ||||||| |||||||| |||| || || |||||||||||||||||||| Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 171 agccaggcagctctgggtgatg 192 |||||||||||||||||||||| Sbjct: 51254 agccaggcagctctgggtgatg 51275
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 421 ttaatatatctctaaatatatt 442 |||||||||||||||||||||| Sbjct: 67963 ttaatatatctctaaatatatt 67942
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 gttaatatatctctaaatata 440 ||||||||||||||||||||| Sbjct: 12335 gttaatatatctctaaatata 12315
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 gttaatatatctctaaatata 440 ||||||||||||||||||||| Sbjct: 66367 gttaatatatctctaaatata 66387
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 cacttttaatatctgatgttt 371 ||||||||||||||||||||| Sbjct: 3040420 cacttttaatatctgatgttt 3040440
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 126 gagcaggacaatgtcaagcgtgtgcagct 154 |||||||| ||||||||||| |||||||| Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 cacttttaatatctgatgttt 371 ||||||||||||||||||||| Sbjct: 3040365 cacttttaatatctgatgttt 3040385
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 cacttttaatatctgatgttt 371 ||||||||||||||||||||| Sbjct: 114423 cacttttaatatctgatgttt 114403
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 gttaatatatctctaaatata 440 ||||||||||||||||||||| Sbjct: 6197 gttaatatatctctaaatata 6217
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 1565 tgagccaggcagctctgggcgatg 1542
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 6.1 Identities = 68/84 (80%) Strand = Plus / Plus Query: 113 catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 172 |||||| |||||||||||||| || |||||| | || || | ||||||| |||||| Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322 Query: 173 ccaggcagctctgggtgatgctaa 196 | |||| ||||| ||||||||||| Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agcgtgtgcagcttgctgac 161 |||||||||||||||||||| Sbjct: 223 agcgtgtgcagcttgctgac 242
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 atgccacttttaatatctga 366 |||||||||||||||||||| Sbjct: 141077 atgccacttttaatatctga 141058
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 atgccacttttaatatctga 366 |||||||||||||||||||| Sbjct: 142583 atgccacttttaatatctga 142564
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 atgccacttttaatatctga 366 |||||||||||||||||||| Sbjct: 95911 atgccacttttaatatctga 95930
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 aatatatctctaaatatatt 442 |||||||||||||||||||| Sbjct: 30473 aatatatctctaaatatatt 30454
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 caggagcaggacaatgtcaa 142 |||||||||||||||||||| Sbjct: 126419 caggagcaggacaatgtcaa 126438
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 311 gagcgacgacggcagctgcctttacacc 338 |||||||||||||||| |||| |||||| Sbjct: 5133 gagcgacgacggcagcagcctgtacacc 5160
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 tccaagcgattgctgggcatgttt 418 ||||| |||||||||||||||||| Sbjct: 41715 tccaatcgattgctgggcatgttt 41692
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 1659 tgagccaggcagctctgggcgatg 1636
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 2026 tgagccaggcagctctgggcgatg 2003
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tacaccttttaagcatgcca 352 |||||||||||||||||||| Sbjct: 78254 tacaccttttaagcatgcca 78235
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 caggagcaggacaatgtcaa 142 |||||||||||||||||||| Sbjct: 106979 caggagcaggacaatgtcaa 106960
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 tgagccaggcagctctgggtgatg 192 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 aatatatctctaaatatatt 442 |||||||||||||||||||| Sbjct: 62485 aatatatctctaaatatatt 62504
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 agcatgccacttttaatatctgat 367 |||||| ||||||||||||||||| Sbjct: 127852 agcatggcacttttaatatctgat 127875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,094,122 Number of Sequences: 3902068 Number of extensions: 3094122 Number of successful extensions: 58117 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57847 Number of HSP's gapped (non-prelim): 228 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
