ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK065884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 331 1e-87
2ref|XM_462957.1| Oryza sativa (japonica cultivar-group), predic... 230 4e-57
3gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN... 117 4e-23
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 117 4e-23
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
6gb|AY111415.1| Zea mays CL26646_1 mRNA sequence 101 2e-18
7gb|DQ160118.1| Taraxacum officinale TO104-2 (To104-2) mRNA, part... 52 0.002
8gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, comple... 44 0.48
9gb|AC131740.3| Mus musculus BAC clone RP23-85D12 from chromosome... 42 1.9
10emb|AL391868.16| Human DNA sequence from clone RP11-422N19 on ch... 42 1.9
11gb|BC007069.1| Homo sapiens riboflavin kinase, mRNA (cDNA clone ... 42 1.9
12emb|CR618476.1| full-length cDNA clone CS0DF018YC17 of Fetal bra... 42 1.9
13emb|CR603745.1| full-length cDNA clone CS0DN002YG01 of Adult bra... 42 1.9
14dbj|AK002011.1| Homo sapiens cDNA FLJ11149 fis, clone PLACE10067... 42 1.9
15ref|NM_018339.3| Homo sapiens riboflavin kinase (RFK), mRNA 42 1.9
16gb|AF038172.1|AF038172 Homo sapiens clone 23923 mRNA sequence 42 1.9
17emb|AL928847.17| Mouse DNA sequence from clone RP24-386K1 on chr... 42 1.9
18gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, co... 40 7.4
19ref|XM_712351.1| Candida albicans SC5314 hypothetical protein (C... 40 7.4
20ref|XM_712262.1| Candida albicans SC5314 hypothetical protein (C... 40 7.4
21gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complet... 40 7.4
22emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on ch... 40 7.4
23emb|BX571974.6| Zebrafish DNA sequence from clone DKEY-29P4 in l... 40 7.4
24dbj|AB201445.1| Triticum aestivum wSSII-A gene for starch syntha... 40 7.4
25gb|AF128805.1|AF128805 Oryzias latipes FIGalpha mRNA, complete cds 40 7.4
26gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, com... 40 7.4
27gb|AC131766.4| Mus musculus BAC clone RP24-240O7 from 6, complet... 40 7.4
28emb|BX005190.8| Mouse DNA sequence from clone RP23-383A22 on chr... 40 7.4
29gb|AC140407.5| Mus musculus BAC clone RP23-142K9 from chromosome... 40 7.4

>dbj|AK065884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043L06, full
           insert sequence
          Length = 1223

 Score =  331 bits (167), Expect = 1e-87
 Identities = 298/342 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatagtatcgtgcttactggggcctgaccgagcagaaaagattaccatattcgctggg 60
           |||||||| || || |||||||| ||||| || |||||||| ||||||||||| ||||| 
Sbjct: 658 gcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctgga 717

                                                                       
Query: 61  gatgtggttcctngcaaaaaacctgatccggcaatctacttgctagcagcaactacattg 120
           |||||||||||| | |||||||||||||| ||||||||||| || |||||||| ||| | 
Sbjct: 718 gatgtggttcctcgtaaaaaacctgatccagcaatctacttacttgcagcaaccacactt 777

                                                                       
Query: 121 gaagttgatccatctagctgtgttgttgttgaagacagtaacataggactttcagcggcc 180
           | ||| ||||||||||| ||||||||||||||||||||||  ||||| ||| |||| |||
Sbjct: 778 ggagtcgatccatctagttgtgttgttgttgaagacagtactatagggcttgcagcagcc 837

                                                                       
Query: 181 aaagctgctggtatgaagtgcattgtaacaaaaagcgggtacaccgcagatgaggacttt 240
           |||||||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||
Sbjct: 838 aaagctgctggtatgaagtgtatcgtaacaaaaagcggatacactgcagaagaggacttt 897

                                                                       
Query: 241 gtaatagcggacgccgtgttcgattgcatcggcgaccctccggaagggcgctttgatcta 300
           | || ||| || || |||||||||||||| || |||||||| ||||  ||||||||| | 
Sbjct: 898 gcaacagctgatgctgtgttcgattgcattggtgaccctccagaagtacgctttgatttg 957

                                                     
Query: 301 gagttctgcgccaacctcctccagaaacaattcgtgagctga 342
           |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 958 gagttctgcgccaacctcctccagaaacaatttgtaagctga 999



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>ref|XM_462957.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1152

 Score =  230 bits (116), Expect = 4e-57
 Identities = 196/223 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatagtatcgtgcttactggggcctgaccgagcagaaaagattaccatattcgctggg 60
           |||||||| || || |||||||| ||||| || |||||||| ||||||||||| ||||| 
Sbjct: 622 gcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctgga 681

                                                                       
Query: 61  gatgtggttcctngcaaaaaacctgatccggcaatctacttgctagcagcaactacattg 120
           |||||||||||| | |||||||||||||| ||||||||||| || |||||||| ||| | 
Sbjct: 682 gatgtggttcctcgtaaaaaacctgatccagcaatctacttacttgcagcaaccacactt 741

                                                                       
Query: 121 gaagttgatccatctagctgtgttgttgttgaagacagtaacataggactttcagcggcc 180
           | ||| ||||||||||| ||||||||||||||||||||||  ||||| ||| |||| |||
Sbjct: 742 ggagtcgatccatctagttgtgttgttgttgaagacagtactatagggcttgcagcagcc 801

                                                      
Query: 181 aaagctgctggtatgaagtgcattgtaacaaaaagcgggtaca 223
           |||||||||||||||||||| || |||||||||||||||||||
Sbjct: 802 aaagctgctggtatgaagtgtatcgtaacaaaaagcgggtaca 844



 Score =  117 bits (59), Expect = 4e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                        
Query: 220  tacaccgcagatgaggactttgtaatagcggacgccgtgttcgattgcatcggcgaccct 279
            ||||| ||||| |||||||||| || ||| || || |||||||||||||| || ||||||
Sbjct: 1030 tacactgcagaagaggactttgcaacagctgatgctgtgttcgattgcattggtgaccct 1089

                                                                        
Query: 280  ccggaagggcgctttgatctagagttctgcgccaacctcctccagaaacaattcgtgagc 339
            || ||||  ||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct: 1090 ccagaagtacgctttgatttggagttctgcgccaacctcctccagaaacaatttgtaagc 1149

               
Query: 340  tga 342
            |||
Sbjct: 1150 tga 1152



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>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
              sequence
          Length = 151269

 Score =  117 bits (59), Expect = 4e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                          
Query: 220    tacaccgcagatgaggactttgtaatagcggacgccgtgttcgattgcatcggcgaccct 279
              ||||| ||||| |||||||||| || ||| || || |||||||||||||| || ||||||
Sbjct: 112246 tacactgcagaagaggactttgcaacagctgatgctgtgttcgattgcattggtgaccct 112305

                                                                          
Query: 280    ccggaagggcgctttgatctagagttctgcgccaacctcctccagaaacaattcgtgagc 339
              || ||||  ||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct: 112306 ccagaagtacgctttgatttggagttctgcgccaacctcctccagaaacaatttgtaagc 112365

                 
Query: 340    tga 342
              |||
Sbjct: 112366 tga 112368



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                          
Query: 139    tgtgttgttgttgaagacagtaacataggactttcagcggccaaagctgctggtatgaag 198
              ||||||||||||||||||||||  ||||| ||| |||| |||||||||||||||||||||
Sbjct: 110171 tgtgttgttgttgaagacagtactatagggcttgcagcagccaaagctgctggtatgaag 110230

                                     
Query: 199    tgcattgtaacaaaaagcgggta 221
              || || |||||||||||||||||
Sbjct: 110231 tgtatcgtaacaaaaagcgggta 110253



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                          
Query: 1      gcaatagtatcgtgcttactggggcctgaccgagcagaaaagattaccatattcgctggg 60
              |||||||| || || |||||||| ||||| || |||||||| ||||||||||| ||||| 
Sbjct: 108976 gcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctgga 109035

                                           
Query: 61     gatgtggttcctngcaaaaaacctgatcc 89
              |||||||||||| | ||||||||||||||
Sbjct: 109036 gatgtggttcctcgtaaaaaacctgatcc 109064



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 90     ggcaatctacttgctagcagcaactacattggaagttgatccatctag 137
              |||||||||||| || |||||||| ||| | | ||| |||||||||||
Sbjct: 109743 ggcaatctacttacttgcagcaaccacacttggagtcgatccatctag 109790



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  117 bits (59), Expect = 4e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                            
Query: 220      tacaccgcagatgaggactttgtaatagcggacgccgtgttcgattgcatcggcgaccct 279
                ||||| ||||| |||||||||| || ||| || || |||||||||||||| || ||||||
Sbjct: 20194162 tacactgcagaagaggactttgcaacagctgatgctgtgttcgattgcattggtgaccct 20194221

                                                                            
Query: 280      ccggaagggcgctttgatctagagttctgcgccaacctcctccagaaacaattcgtgagc 339
                || ||||  ||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct: 20194222 ccagaagtacgctttgatttggagttctgcgccaacctcctccagaaacaatttgtaagc 20194281

                   
Query: 340      tga 342
                |||
Sbjct: 20194282 tga 20194284



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 139      tgtgttgttgttgaagacagtaacataggactttcagcggccaaagctgctggtatgaag 198
                ||||||||||||||||||||||  ||||| ||| |||| |||||||||||||||||||||
Sbjct: 20192087 tgtgttgttgttgaagacagtactatagggcttgcagcagccaaagctgctggtatgaag 20192146

                                       
Query: 199      tgcattgtaacaaaaagcgggta 221
                || || |||||||||||||||||
Sbjct: 20192147 tgtatcgtaacaaaaagcgggta 20192169



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1        gcaatagtatcgtgcttactggggcctgaccgagcagaaaagattaccatattcgctggg 60
                |||||||| || || |||||||| ||||| || |||||||| ||||||||||| ||||| 
Sbjct: 20190892 gcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctgga 20190951

                                             
Query: 61       gatgtggttcctngcaaaaaacctgatcc 89
                |||||||||||| | ||||||||||||||
Sbjct: 20190952 gatgtggttcctcgtaaaaaacctgatcc 20190980



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 90       ggcaatctacttgctagcagcaactacattggaagttgatccatctag 137
                |||||||||||| || |||||||| ||| | | ||| |||||||||||
Sbjct: 20191659 ggcaatctacttacttgcagcaaccacacttggagtcgatccatctag 20191706



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  117 bits (59), Expect = 4e-23
 Identities = 107/123 (86%)
 Strand = Plus / Plus

                                                                            
Query: 220      tacaccgcagatgaggactttgtaatagcggacgccgtgttcgattgcatcggcgaccct 279
                ||||| ||||| |||||||||| || ||| || || |||||||||||||| || ||||||
Sbjct: 20187189 tacactgcagaagaggactttgcaacagctgatgctgtgttcgattgcattggtgaccct 20187248

                                                                            
Query: 280      ccggaagggcgctttgatctagagttctgcgccaacctcctccagaaacaattcgtgagc 339
                || ||||  ||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct: 20187249 ccagaagtacgctttgatttggagttctgcgccaacctcctccagaaacaatttgtaagc 20187308

                   
Query: 340      tga 342
                |||
Sbjct: 20187309 tga 20187311



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 139      tgtgttgttgttgaagacagtaacataggactttcagcggccaaagctgctggtatgaag 198
                ||||||||||||||||||||||  ||||| ||| |||| |||||||||||||||||||||
Sbjct: 20185114 tgtgttgttgttgaagacagtactatagggcttgcagcagccaaagctgctggtatgaag 20185173

                                       
Query: 199      tgcattgtaacaaaaagcgggta 221
                || || |||||||||||||||||
Sbjct: 20185174 tgtatcgtaacaaaaagcgggta 20185196



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1        gcaatagtatcgtgcttactggggcctgaccgagcagaaaagattaccatattcgctggg 60
                |||||||| || || |||||||| ||||| || |||||||| ||||||||||| ||||| 
Sbjct: 20183919 gcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctgga 20183978

                                             
Query: 61       gatgtggttcctngcaaaaaacctgatcc 89
                |||||||||||| | ||||||||||||||
Sbjct: 20183979 gatgtggttcctcgtaaaaaacctgatcc 20184007



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 90       ggcaatctacttgctagcagcaactacattggaagttgatccatctag 137
                |||||||||||| || |||||||| ||| | | ||| |||||||||||
Sbjct: 20184686 ggcaatctacttacttgcagcaaccacacttggagtcgatccatctag 20184733



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>gb|AY111415.1| Zea mays CL26646_1 mRNA sequence
          Length = 485

 Score =  101 bits (51), Expect = 2e-18
 Identities = 190/238 (79%)
 Strand = Plus / Minus

                                                                       
Query: 105 agcagcaactacattggaagttgatccatctagctgtgttgttgttgaagacagtaacat 164
           ||||||||||||| | | ||||||||||   |||||||||||| |||||| |||||  ||
Sbjct: 485 agcagcaactacacttggagttgatccacaaagctgtgttgttattgaagccagtactat 426

                                                                       
Query: 165 aggactttcagcggccaaagctgctggtatgaagtgcattgtaacaaaaagcgggtacac 224
           ||| ||  ||||||| |||||||| || |||||||| || |||||     |||| |||||
Sbjct: 425 agggctcgcagcggcaaaagctgccggcatgaagtgtatcgtaacnnnnngcggctacac 366

                                                                       
Query: 225 cgcagatgaggactttgtaatagcggacgccgtgttcgattgcatcggcgaccctccgga 284
            ||||| |||||||| |  | ||| || || |||||||||||||| || ||||| || ||
Sbjct: 365 tgcagaagaggacttcgagacagcagatgcagtgttcgattgcattggtgacccgccaga 306

                                                                     
Query: 285 agggcgctttgatctagagttctgcgccaacctcctccagaaacaattcgtgagctga 342
           || |||||| ||| | || |||||||||||  | ||| |||||||||  |||||||||
Sbjct: 305 agtgcgcttcgatttggatttctgcgccaagttgctcaagaaacaatatgtgagctga 248



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>gb|DQ160118.1| Taraxacum officinale TO104-2 (To104-2) mRNA, partial cds
          Length = 278

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 86/106 (81%)
 Strand = Plus / Plus

                                                                       
Query: 173 cagcggccaaagctgctggtatgaagtgcattgtaacaaaaagcgggtacaccgcagatg 232
           ||||||| ||||| || || ||||  |||||||| || || ||||| ||||| |||||||
Sbjct: 48  cagcggcaaaagccgccggaatgacatgcattgtcaccaagagcggttacacagcagatg 107

                                                         
Query: 233 aggactttgtaatagcggacgccgtgttcgattgcatcggcgaccc 278
           ||||||||| ||  || ||||| || || || |||||||| |||||
Sbjct: 108 aggactttgcaaacgcagacgctgtttttgactgcatcggagaccc 153



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>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence
          Length = 163009

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 143   ttgttgttgaagacagtaacat 164
             ||||||||||||||||||||||
Sbjct: 52469 ttgttgttgaagacagtaacat 52448



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>gb|AC131740.3| Mus musculus BAC clone RP23-85D12 from chromosome 2, complete sequence
          Length = 158830

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 417   agttgtaaatggttttgaata 437
             |||||||||||||||||||||
Sbjct: 46729 agttgtaaatggttttgaata 46709



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>emb|AL391868.16| Human DNA sequence from clone RP11-422N19 on chromosome 9 Contains the
             3' end of one variant of the PCSK5 gene for proprotein
             convertase subtilisin/kexin type 5, a novel gene
             (FLJ11149), a laminin receptor 1 (ribosomal protein SA,
             67kDa) (LAMR1) pseudogene and a CpG island, complete
             sequence
          Length = 102137

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   tgttgttgttgaagacagtaa 161
             |||||||||||||||||||||
Sbjct: 79718 tgttgttgttgaagacagtaa 79698



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>gb|BC007069.1| Homo sapiens riboflavin kinase, mRNA (cDNA clone MGC:12524
            IMAGE:3997678), complete cds
          Length = 2617

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  tgttgttgttgaagacagtaa 161
            |||||||||||||||||||||
Sbjct: 1476 tgttgttgttgaagacagtaa 1496



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>emb|CR618476.1| full-length cDNA clone CS0DF018YC17 of Fetal brain of Homo sapiens
            (human)
          Length = 2424

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  tgttgttgttgaagacagtaa 161
            |||||||||||||||||||||
Sbjct: 1290 tgttgttgttgaagacagtaa 1310



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>emb|CR603745.1| full-length cDNA clone CS0DN002YG01 of Adult brain of Homo sapiens
            (human)
          Length = 2395

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  tgttgttgttgaagacagtaa 161
            |||||||||||||||||||||
Sbjct: 1315 tgttgttgttgaagacagtaa 1335



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>dbj|AK002011.1| Homo sapiens cDNA FLJ11149 fis, clone PLACE1006731, weakly similar to
            RIBOFLAVIN KINASE (EC 2.7.1.26)/ FMN ADENYLYLTRANSFERASE
            (EC 2.7.7.2)
          Length = 1592

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  tgttgttgttgaagacagtaa 161
            |||||||||||||||||||||
Sbjct: 1559 tgttgttgttgaagacagtaa 1579



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>ref|NM_018339.3| Homo sapiens riboflavin kinase (RFK), mRNA
          Length = 2712

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  tgttgttgttgaagacagtaa 161
            |||||||||||||||||||||
Sbjct: 1571 tgttgttgttgaagacagtaa 1591



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>gb|AF038172.1|AF038172 Homo sapiens clone 23923 mRNA sequence
          Length = 1588

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 141 tgttgttgttgaagacagtaa 161
           |||||||||||||||||||||
Sbjct: 453 tgttgttgttgaagacagtaa 473



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>emb|AL928847.17| Mouse DNA sequence from clone RP24-386K1 on chromosome 2, complete
             sequence
          Length = 42866

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 417   agttgtaaatggttttgaata 437
             |||||||||||||||||||||
Sbjct: 35520 agttgtaaatggttttgaata 35500



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>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence
          Length = 199727

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   ttgtaaatggttttgaatat 438
             ||||||||||||||||||||
Sbjct: 35856 ttgtaaatggttttgaatat 35837



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>ref|XM_712351.1| Candida albicans SC5314 hypothetical protein (CaO19_8122), mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  aaaagaaacgacgctatttt 458
            ||||||||||||||||||||
Sbjct: 1162 aaaagaaacgacgctatttt 1181



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>ref|XM_712262.1| Candida albicans SC5314 hypothetical protein (CaO19_492), mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  aaaagaaacgacgctatttt 458
            ||||||||||||||||||||
Sbjct: 1162 aaaagaaacgacgctatttt 1181



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>gb|AC125215.4| Mus musculus BAC clone RP23-93K19 from 6, complete sequence
          Length = 215584

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 428   gttttgaatataaaagaaac 447
             ||||||||||||||||||||
Sbjct: 23763 gttttgaatataaaagaaac 23744



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>emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on chromosome 13 Contains a
              ubiquitin pseudogene, complete sequence
          Length = 105783

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 467    aaatggctggcattcaacaa 486
              ||||||||||||||||||||
Sbjct: 102875 aaatggctggcattcaacaa 102894



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>emb|BX571974.6| Zebrafish DNA sequence from clone DKEY-29P4 in linkage group 12, complete
              sequence
          Length = 267018

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    attcaacaacacttacaaaa 497
              ||||||||||||||||||||
Sbjct: 180226 attcaacaacacttacaaaa 180245



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>dbj|AB201445.1| Triticum aestivum wSSII-A gene for starch synthase II-A, complete
           cds
          Length = 6898

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 agaaacaattcgtgagctga 342
           ||||||||||||||||||||
Sbjct: 576 agaaacaattcgtgagctga 557



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>gb|AF128805.1|AF128805 Oryzias latipes FIGalpha mRNA, complete cds
          Length = 1099

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 114 tacattggaagttgatccatctag 137
           |||||||||||||||| |||||||
Sbjct: 809 tacattggaagttgatgcatctag 832



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>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence
          Length = 174902

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   ttgtaaatggttttgaatat 438
             ||||||||||||||||||||
Sbjct: 87878 ttgtaaatggttttgaatat 87897



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>gb|AC131766.4| Mus musculus BAC clone RP24-240O7 from 6, complete sequence
          Length = 152512

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   gttttgaatataaaagaaac 447
             ||||||||||||||||||||
Sbjct: 70534 gttttgaatataaaagaaac 70553



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>emb|BX005190.8| Mouse DNA sequence from clone RP23-383A22 on chromosome X, complete
             sequence
          Length = 212955

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   cacttacaaaattgtttgtc 506
             ||||||||||||||||||||
Sbjct: 64598 cacttacaaaattgtttgtc 64579



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>gb|AC140407.5| Mus musculus BAC clone RP23-142K9 from chromosome unknown, complete
             sequence
          Length = 193404

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   cacttacaaaattgtttgtc 506
             ||||||||||||||||||||
Sbjct: 42374 cacttacaaaattgtttgtc 42355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,826,230
Number of Sequences: 3902068
Number of extensions: 4826230
Number of successful extensions: 87318
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87213
Number of HSP's gapped (non-prelim): 104
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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