ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4m24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPR1_YEAST (Q12361) G protein-coupled receptor GPR1 32 0.39
2GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outg... 29 3.3
3TRDN_CANFA (P82179) Triadin 28 5.6
4YKN1_SCHPO (Q9HDX4) Putative transporter B1A11.01 28 5.6
5PHR_THET8 (P61497) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.... 28 7.3
6LFTR_PSEAE (Q9I0M1) Leucyl/phenylalanyl-tRNA--protein transferas... 23 7.7
7LFTR_PSEPK (Q88FS7) Leucyl/phenylalanyl-tRNA--protein transferas... 23 9.9

>GPR1_YEAST (Q12361) G protein-coupled receptor GPR1|
          Length = 961

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 150 WLWDNRFSGGLLPGLSPKQRYYWCASLLLPA 58
           W W N+ SG +  GL  K+ Y W  + L+PA
Sbjct: 160 WKWRNKRSGNMEGGLYKKRSYIWPITALVPA 190



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>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 141 DNRFSGGLLPGLSPKQRYYWCASLLLPATSPHARQICSAP*GPA 10
           D  FSG L PG S K       ++  P TS +   +CS   GPA
Sbjct: 248 DPEFSGKLTPGSSGKTELVSSVTVA-PVTSENVNPVCSGGAGPA 290



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>TRDN_CANFA (P82179) Triadin|
          Length = 700

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 285 KDEPNSSSLKQ-EKQPQQAYRCSGKKIVCICKHTRYPKYSDR*PIVWLWDNRFSGGLLPG 109
           K +P ++ +K+ +K P +A    GK+   + KH +  +Y+      ++ D    G L PG
Sbjct: 221 KVKPTAAKVKEVQKTPPKAKEKEGKETAAVAKHEQKDQYAF---CRYMIDMFVHGDLRPG 277

Query: 108 LSP 100
            SP
Sbjct: 278 QSP 280



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>YKN1_SCHPO (Q9HDX4) Putative transporter B1A11.01|
          Length = 495

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 4/25 (16%)
 Frame = +1

Query: 139 VPEPDYRLPIAILG----ISGVFAY 201
           VPEP++RLP+A LG    ++G+F +
Sbjct: 358 VPEPEFRLPMAFLGCFAIMTGMFIF 382



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>PHR_THET8 (P61497) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 420

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 261 LKQEKQPQQAYRCSGKKIVCICKHTRYPKYSD 166
           L  EK P+ A R   K +  +  HT Y +Y D
Sbjct: 74  LPWEKVPEAARRLKAKAVYALTSHTPYGRYRD 105



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>LFTR_PSEAE (Q9I0M1) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)|
           (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase)
          Length = 226

 Score = 23.1 bits (48), Expect(2) = 7.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 142 GQPFLWWS 119
           GQP LWWS
Sbjct: 52  GQPILWWS 59



 Score = 23.1 bits (48), Expect(2) = 7.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 216 KKIVCICKHTRYPKYSDR*PIVW 148
           +++V   +H  +P Y D  PI+W
Sbjct: 35  QRLVAAYRHGCFPWYQDGQPILW 57



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>LFTR_PSEPK (Q88FS7) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)|
           (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase)
          Length = 226

 Score = 23.1 bits (48), Expect(2) = 9.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 142 GQPFLWWS 119
           GQP LWWS
Sbjct: 52  GQPILWWS 59



 Score = 22.7 bits (47), Expect(2) = 9.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 222 SGKKIVCICKHTRYPKYSDR*PIVW 148
           S +++V   +H  +P Y D  PI+W
Sbjct: 33  SPERLVQAYRHGCFPWYQDGQPILW 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,966,386
Number of Sequences: 219361
Number of extensions: 933689
Number of successful extensions: 2696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2695
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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