ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4m19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OCS1_MAIZE (P24068) Ocs element-binding factor 1 (OCSBF-1) 43 6e-04
2CPRF2_PETCR (Q99090) Light-inducible protein CPRF-2 40 0.005
3EMBP1_WHEAT (P25032) DNA-binding protein EMBP-1 (Histone promote... 36 0.071
4TAF1_TOBAC (Q99142) Transcriptional activator TAF-1 (Fragment) 35 0.16
5HBP1A_WHEAT (P23922) Transcription factor HBP-1a (Histone-specif... 34 0.27
6RF2B_ORYSA (Q6S4P4) Transcription factor RF2b 33 0.35
7GBF3_ARATH (P42776) G-box-binding factor 3 (AtbZIP55) 33 0.35
8TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-bindi... 33 0.46
9GBF2_ARATH (P42775) G-box-binding factor 2 (AtbZIP54) 33 0.46
10TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (... 33 0.60
11RF2A_ORYSA (Q69IL4) Transcription factor RF2a 33 0.60
12CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1 32 0.79
13POF21_ARATH (Q04088) Probable transcription factor PosF21 (AtbZI... 32 0.79
14CPRF3_PETCR (Q99091) Light-inducible protein CPRF-3 32 0.79
15GBF1_ARATH (P42774) G-box-binding factor 1 (AtbZIP41) 32 1.0
16HAC1_YEAST (P41546) Transcriptional activatory protein HAC1 31 1.8
17OP2_MAIZE (P12959) Regulatory protein opaque-2 31 1.8
18ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUM... 31 2.3
19DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7) 31 2.3
20ATF6B_MOUSE (O35451) Cyclic AMP-dependent transcription factor A... 30 3.9
21ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor A... 30 3.9
22TGA3_ARATH (Q39234) Transcription factor TGA3 (AtbZIP22) 30 3.9
23GBF4_ARATH (P42777) G-box-binding factor 4 (AtbZIP40) 30 5.1
24LEC2_MEGRO (P17346) Lectin BRA-2 29 8.7
25ATF6A_HUMAN (P18850) Cyclic AMP-dependent transcription factor A... 29 8.7

>OCS1_MAIZE (P24068) Ocs element-binding factor 1 (OCSBF-1)|
          Length = 151

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +3

Query: 237 RRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 332
           RR KR LSNRES RRSR+ K++HLD+L   V+
Sbjct: 26  RREKRRLSNRESARRSRLRKQQHLDELVQEVA 57



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>CPRF2_PETCR (Q99090) Light-inducible protein CPRF-2|
          Length = 401

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 332
           + +R +RMLSNRES RRSR  K+ H+ +L   VS
Sbjct: 198 DAKRVRRMLSNRESARRSRRRKQAHMTELETQVS 231



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>EMBP1_WHEAT (P25032) DNA-binding protein EMBP-1 (Histone promoter-binding|
           protein 1a(1)) (HBP-1a(1))
          Length = 354

 Score = 35.8 bits (81), Expect = 0.071
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 332
           E +R +R  SNRES RRSR+ K++  ++LA  VS
Sbjct: 250 ELKRERRKQSNRESARRSRLRKQQECEELAQKVS 283



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>TAF1_TOBAC (Q99142) Transcriptional activator TAF-1 (Fragment)|
          Length = 265

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALV 329
           E +R KR  SNRES RRSR+ K+   ++LA  V
Sbjct: 194 ELKREKRKQSNRESARRSRLRKQAEAEELAIRV 226



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>HBP1A_WHEAT (P23922) Transcription factor HBP-1a (Histone-specific|
           transcription factor HBP1)
          Length = 349

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           E ++ KR LSNRES RRSR+ K+   ++L
Sbjct: 252 ELKKQKRKLSNRESARRSRLRKQAECEEL 280



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>RF2B_ORYSA (Q6S4P4) Transcription factor RF2b|
          Length = 329

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 222 ALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           A ++ +RAKR+L+NR+S  RS+  K R++ +L
Sbjct: 129 AAIDPKRAKRILANRQSAARSKERKARYITEL 160



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>GBF3_ARATH (P42776) G-box-binding factor 3 (AtbZIP55)|
          Length = 382

 Score = 33.5 bits (75), Expect = 0.35
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALV 329
           E +R +R  SNRES RRSR+ K+   ++LA  V
Sbjct: 259 ELKRERRKQSNRESARRSRLRKQAETEELARKV 291



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>TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-binding factor 5)|
           (OBF5) (AtbZIP26)
          Length = 330

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +3

Query: 210 EQMRALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           ++ ++ M+Q+  +R+  NRE+ R+SR+ KK ++  L
Sbjct: 37  DRSKSKMDQKTLRRLAQNREAARKSRLRKKAYVQQL 72



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>GBF2_ARATH (P42775) G-box-binding factor 2 (AtbZIP54)|
          Length = 360

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALV 329
           E +R KR  SNRES RRSR+ K+   + L+  V
Sbjct: 249 EVKREKRKQSNRESARRSRLRKQAETEQLSVKV 281



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>TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b)|
           (AtbZIP20)
          Length = 330

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 210 EQMRALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           ++ +  M+Q+  +R+  NRE+ R+SR+ KK ++  L
Sbjct: 37  DRSKGKMDQKTLRRLAQNREAARKSRLRKKAYVQQL 72



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>RF2A_ORYSA (Q69IL4) Transcription factor RF2a|
          Length = 380

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 222 ALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           AL++ +RAKR+ +NR+S  RS+  K R++ +L
Sbjct: 178 ALVDPKRAKRIWANRQSAARSKERKMRYIAEL 209



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>CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1|
          Length = 411

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 237 RRAKRMLSNRESVRRSRMHKKRHLDDLAALV 329
           +R +R  SNRES RRSR+ K+   ++LA  V
Sbjct: 271 KRERRKQSNRESARRSRLRKQAEAEELAIKV 301



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>POF21_ARATH (Q04088) Probable transcription factor PosF21 (AtbZIP59)|
          Length = 398

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 222 ALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           AL++ +RAKR+ +NR+S  RS+  K R++ +L
Sbjct: 198 ALIDPKRAKRIWANRQSAARSKERKTRYIFEL 229



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>CPRF3_PETCR (Q99091) Light-inducible protein CPRF-3|
          Length = 296

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           E +R +R  SNRES RRSR+ K+   D+L
Sbjct: 196 ELKRQRRKQSNRESARRSRLRKQAKSDEL 224



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>GBF1_ARATH (P42774) G-box-binding factor 1 (AtbZIP41)|
          Length = 315

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           E +R KR  SNRES RRSR+ K+   + L
Sbjct: 222 ELKRQKRKQSNRESARRSRLRKQAECEQL 250



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>HAC1_YEAST (P41546) Transcriptional activatory protein HAC1|
          Length = 230

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 231 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALVSL 335
           EQRR +R+L NR +  +SR  K+ HL  L    SL
Sbjct: 39  EQRRIERILRNRRAAHQSREKKRLHLQYLERKCSL 73



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>OP2_MAIZE (P12959) Regulatory protein opaque-2|
          Length = 453

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 234 QRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           + R ++  SNRES RRSR  K  HL +L
Sbjct: 226 EERVRKKESNRESARRSRYRKAAHLKEL 253



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>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 640

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 231 EQRRAKRMLSNRE--SVRRSRMHKKRHLDDLAAL 326
           E+R  KR L  +E  S +RSR+ +K  LDD+ AL
Sbjct: 606 EERSRKRKLDEKENLSAKRSRIEQKEELDDVIAL 639



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>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)|
          Length = 1121

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 412  HTMRMITKDDSMGKIDKYDP*TVKIHKLTSAARSSRWRFLCIRE 281
            HT R I K   + K+ +YDP T+   +LT   R   W+ L + E
Sbjct: 1010 HTRRTIFKTTLLNKVSRYDPFTIHNEQLTRVLRP--WKDLTLYE 1051



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>ATF6B_MOUSE (O35451) Cyclic AMP-dependent transcription factor ATF-6 beta|
           (Activating transcription factor 6 beta) (ATF6-beta)
           (cAMP-responsive element-binding protein-like 1) (cAMP
           response element-binding protein-related protein)
           (Creb-rp)
          Length = 699

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 RRAKRMLSNRESVRRSRMHKKRHLDDLAA 323
           +R +RM+ NRES  +SR  KK +L  L A
Sbjct: 324 KRQQRMIKNRESACQSRRKKKEYLQGLEA 352



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>ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor ATF-6 beta|
           (Activating transcription factor 6 beta) (ATF6-beta)
           (cAMP-responsive element-binding protein-like 1) (cAMP
           response element-binding protein-related protein)
           (Creb-rp) (Protein G13
          Length = 703

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 RRAKRMLSNRESVRRSRMHKKRHLDDLAA 323
           +R +RM+ NRES  +SR  KK +L  L A
Sbjct: 327 KRQQRMIKNRESACQSRRKKKEYLQGLEA 355



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>TGA3_ARATH (Q39234) Transcription factor TGA3 (AtbZIP22)|
          Length = 384

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 228 MEQRRAKRMLSNRESVRRSRMHKKRHLDDL 317
           +  +  +R+  NRE+ R+SR+ KK H+  L
Sbjct: 95  INDKMKRRLAQNREAARKSRLRKKAHVQQL 124



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>GBF4_ARATH (P42777) G-box-binding factor 4 (AtbZIP40)|
          Length = 270

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 237 RRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 332
           +R KRM+ NRES  RSR  K+ +  +L  L +
Sbjct: 189 QRQKRMIKNRESAARSRERKQAYQVELETLAA 220



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>LEC2_MEGRO (P17346) Lectin BRA-2|
          Length = 173

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
 Frame = +1

Query: 259 PIGSRC---AARGCTRSAISTTSPRSSVCEFLPSTGHICRFCP---------CYH-PLLS 399
           P+   C   A    T++    T+  S + E + +T H C  CP         C+H PL  
Sbjct: 9   PVPDTCGHVAEERVTQAFAELTTKLSELQENVTNTFHGCNHCPNGWVTSENKCFHVPLEK 68

Query: 400 SSWYEKCGVM*RCGAMLPLITIHSLSPSI 486
           +SW    GV  R  +   L +I +   ++
Sbjct: 69  ASWMVAHGVCARLDSRARLASIDAADQAV 97



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>ATF6A_HUMAN (P18850) Cyclic AMP-dependent transcription factor ATF-6 alpha|
           (Activating transcription factor 6 alpha) (ATF6-alpha)
          Length = 670

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 237 RRAKRMLSNRESVRRSRMHKKRHLDDLAA 323
           RR +RM+ NRES  +SR  KK ++  L A
Sbjct: 308 RRQQRMIKNRESACQSRKKKKEYMLGLEA 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,006,576
Number of Sequences: 219361
Number of extensions: 1017169
Number of successful extensions: 3293
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3289
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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