ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4m17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 7e-25
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
3dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
4ref|XM_477794.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
5ref|XM_473849.1| Oryza sativa (japonica cultivar-group), predic... 46 0.14
6dbj|AK104817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
7dbj|AK066289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
8dbj|AK059240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
9emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 44 0.54
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
11gb|AC098849.9| Mus musculus chromosome 3, clone RP23-12L23, comp... 42 2.1
12gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, co... 42 2.1
13gb|AC121151.11| Mus musculus chromosome 17, clone RP24-342C2, co... 42 2.1
14gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 42 2.1
15emb|AL049563.4|HS68D15 Human DNA sequence from clone RP1-68D15 o... 42 2.1
16emb|BX890545.7| Zebrafish DNA sequence from clone CH211-253N4 in... 42 2.1
17ref|NM_100975.2| Arabidopsis thaliana MLO4; calmodulin binding A... 40 8.4
18gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map ... 40 8.4
19gb|AC107819.8| Mus musculus chromosome 9, clone RP23-158E1, comp... 40 8.4
20gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Canc... 40 8.4
21gb|BT010322.1| Arabidopsis thaliana At1g11000 mRNA, complete cds 40 8.4
22emb|X87372.1|LESODCC L.esculentum SodCc;Le;2 gene 40 8.4
23gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, compl... 40 8.4
24gb|AC095060.3| Homo sapiens BAC clone RP11-436F23 from 4, comple... 40 8.4
25gb|AC018684.3| Homo sapiens BAC clone RP11-424H16 from 10, compl... 40 8.4
26ref|XM_686478.1| PREDICTED: Danio rerio similar to [Segment 2 of... 40 8.4
27gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosom... 40 8.4
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
30gb|AC113052.10| Mus musculus chromosome 5, clone RP23-250D22, co... 40 8.4
31gb|AF369565.1| Arabidopsis thaliana membrane protein Mlo4 mRNA, ... 40 8.4
32dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
33dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, ... 40 8.4
34dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
35gb|AY106566.1| Zea mays PCO099616 mRNA sequence 40 8.4
36dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.4
37gb|AC144778.3| Mus musculus BAC clone RP23-278A22 from 6, comple... 40 8.4
38dbj|AP000240.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 8.4
39dbj|AP000200.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 8.4
40dbj|AP000096.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 40 8.4 
>dbj|AK068716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163C09, full
            insert sequence
          Length = 3660

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                        
Query: 91   tacagcgtcgaccccttcatcgggcacggagttgggacgatcttccattcagaacccatc 150
            |||||| |||| |||||  |||| || ||| ||||||  || ||||| || ||||| |||
Sbjct: 3097 tacagcatcgatccctttgtcggacatggaattgggaaaatattccactcggaaccgatc 3156

                                                                        
Query: 151  atatggcacacctatgattatgagccaggattcatggttgcaggccagacattcacaatc 210
            || ||||| |||||||||||||||||||| | |||||||| |||||||||||||||||| 
Sbjct: 3157 atttggcatacctatgattatgagccaggctacatggttgtaggccagacattcacaatt 3216

                                                                        
Query: 211  gagcctaccctgtccatggggaccacacagtgcgaggtgtgggacgatggctggaccgct 270
            |||||||| |||||||||||   ||| ||||||    |||||||||| || ||||| |||
Sbjct: 3217 gagcctactctgtccatgggaggcacccagtgcacactgtgggacgacgggtggacggct 3276

                                                  
Query: 271  attacgatggatggcagcctcaacgcacagtttgagca 308
             | ||| ||||  ||||||||| ||| ||||| |||||
Sbjct: 3277 gtcacggtggacagcagcctcaccgcgcagttcgagca 3314



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                          
Query: 3    catgctgaggggcatatcagcctgcaaacatggtggtagctttaag 48
            |||||||||||| ||||||||||||||||| |||| ||| ||||||
Sbjct: 2653 catgctgaggggaatatcagcctgcaaacacggtgctagttttaag 2698
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                              
Query: 164      atgattatgagccaggattcatggttgcaggccagacattcacaat 209
                |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14467197 atgattatgagccaggctacatggttgcaggccagacattcacaat 14467152



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 3        catgctgaggggcatatcagcctgcaaacatggtggtagctttaag 48
                |||||||||||| ||||||||||||||||| |||| ||| ||||||
Sbjct: 14467815 catgctgaggggaatatcagcctgcaaacacggtgctagttttaag 14467770
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>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0673E01
          Length = 125909

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                           
Query: 164   atgattatgagccaggattcatggttgcaggccagacattcacaat 209
             |||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 87528 atgattatgagccaggctacatggttgcaggccagacattcacaat 87483



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 3     catgctgaggggcatatcagcctgcaaacatggtggtagctttaag 48
             |||||||||||| ||||||||||||||||| |||| ||| ||||||
Sbjct: 88146 catgctgaggggaatatcagcctgcaaacacggtgctagttttaag 88101
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>ref|XM_477794.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1062

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 71/87 (81%)
 Strand = Plus / Plus

                                                                       
Query: 21  agcctgcaaacatggtggtagctttaaggatattggagagagaataagtgaatatgtgaa 80
           |||||||||||| |||| ||| ||||||   |||||  ||||||||||||| || ||| |
Sbjct: 541 agcctgcaaacacggtgctagttttaagacaattggtcagagaataagtgagtacgtgga 600

                                      
Query: 81  caagtatggctacagcgtcgacccctt 107
           | |||| || |||||| |||| |||||
Sbjct: 601 cgagtacgggtacagcatcgatccctt 627
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>ref|XM_473849.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 184 atggttgcaggccagacattcacaatcgagcctaccctgtccatggg 230
           ||||||| |||||||||||||||||| || ||  |||| ||||||||
Sbjct: 829 atggttgaaggccagacattcacaatagaaccggccctatccatggg 875



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 1   tgcatgctgaggggcatatcagcctgcaaacatggt 36
           |||||||| ||||  |||||||| ||||||||||||
Sbjct: 643 tgcatgctcagggctatatcagcttgcaaacatggt 678
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>dbj|AK104817.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H12, full
           insert sequence
          Length = 1261

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 184 atggttgcaggccagacattcacaatcgagcctaccctgtccatggg 230
           ||||||| |||||||||||||||||| || ||  |||| ||||||||
Sbjct: 935 atggttgaaggccagacattcacaatagaaccggccctatccatggg 981



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 1   tgcatgctgaggggcatatcagcctgcaaacatggt 36
           |||||||| ||||  |||||||| ||||||||||||
Sbjct: 749 tgcatgctcagggctatatcagcttgcaaacatggt 784
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>dbj|AK066289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063M01, full
            insert sequence
          Length = 1327

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 184  atggttgcaggccagacattcacaatcgagcctaccctgtccatggg 230
            ||||||| |||||||||||||||||| || ||  |||| ||||||||
Sbjct: 956  atggttgaaggccagacattcacaatagaaccggccctatccatggg 1002



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 1   tgcatgctgaggggcatatcagcctgcaaacatggt 36
           |||||||| ||||  |||||||| ||||||||||||
Sbjct: 770 tgcatgctcagggctatatcagcttgcaaacatggt 805
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>dbj|AK059240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F07, full
           insert sequence
          Length = 1062

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 71/87 (81%)
 Strand = Plus / Plus

                                                                       
Query: 21  agcctgcaaacatggtggtagctttaaggatattggagagagaataagtgaatatgtgaa 80
           |||||||||||| |||| ||| ||||||   |||||  ||||||||||||| || ||| |
Sbjct: 541 agcctgcaaacacggtgctagttttaagacaattggtcagagaataagtgagtacgtgga 600

                                      
Query: 81  caagtatggctacagcgtcgacccctt 107
           | |||| || |||||| |||| |||||
Sbjct: 601 cgagtacgggtacagcatcgatccctt 627
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 184   atggttgcaggccagacattcacaat 209
             ||||||| ||||||||||||||||||
Sbjct: 76990 atggttgaaggccagacattcacaat 76965



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 1     tgcatgctgaggggcatatcagcctgcaaacatggt 36
             |||||||| ||||  |||||||| ||||||||||||
Sbjct: 77804 tgcatgctcagggctatatcagcttgcaaacatggt 77769
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 184      atggttgcaggccagacattcacaat 209
                ||||||| ||||||||||||||||||
Sbjct: 30979617 atggttgaaggccagacattcacaat 30979592



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 1        tgcatgctgaggggcatatcagcctgcaaacatggt 36
                |||||||| ||||  |||||||| ||||||||||||
Sbjct: 30980431 tgcatgctcagggctatatcagcttgcaaacatggt 30980396
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>gb|AC098849.9| Mus musculus chromosome 3, clone RP23-12L23, complete sequence
          Length = 210441

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 573   tacagaaataagcatgaatga 593
             |||||||||||||||||||||
Sbjct: 64295 tacagaaataagcatgaatga 64275
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>gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, complete sequence
          Length = 192916

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 573   tacagaaataagcatgaatga 593
             |||||||||||||||||||||
Sbjct: 21250 tacagaaataagcatgaatga 21270
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>gb|AC121151.11| Mus musculus chromosome 17, clone RP24-342C2, complete sequence
          Length = 205467

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 510   acttcctctttcattttctca 530
             |||||||||||||||||||||
Sbjct: 36278 acttcctctttcattttctca 36298
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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 518   tttcattttctcaaggaatgttgga 542
             ||||||||| |||||||||||||||
Sbjct: 89147 tttcattttatcaaggaatgttgga 89171
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>emb|AL049563.4|HS68D15 Human DNA sequence from clone RP1-68D15 on chromosome X Contains the 3'
             end of a novel gene (FLJ23018) and the 3' end of the TRPC5
             gene for transient receptor potential cation channel
             subfamily C member 5, complete sequence
          Length = 113028

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 142   gaacccatcatatggcacacc 162
             |||||||||||||||||||||
Sbjct: 68658 gaacccatcatatggcacacc 68678
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>emb|BX890545.7| Zebrafish DNA sequence from clone CH211-253N4 in linkage group 4,
              complete sequence
          Length = 186267

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 482    cattagcatctcattcatttg 502
              |||||||||||||||||||||
Sbjct: 146640 cattagcatctcattcatttg 146620
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>ref|NM_100975.2| Arabidopsis thaliana MLO4; calmodulin binding AT1G11000 (MLO4)
           mRNA, complete cds
          Length = 1971

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 tcctctttcattttctcaag 532
           ||||||||||||||||||||
Sbjct: 255 tcctctttcattttctcaag 236
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>gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map q21.3-22.11, complete
              sequence
          Length = 210352

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ctcattagcatctcattcat 499
              ||||||||||||||||||||
Sbjct: 136189 ctcattagcatctcattcat 136170
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>gb|AC107819.8| Mus musculus chromosome 9, clone RP23-158E1, complete sequence
          Length = 172309

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    taaggatattggagagagaa 64
             ||||||||||||||||||||
Sbjct: 81704 taaggatattggagagagaa 81723
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>gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205825

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    tctttcattttctcaaggaa 535
              ||||||||||||||||||||
Sbjct: 138314 tctttcattttctcaaggaa 138333
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>gb|BT010322.1| Arabidopsis thaliana At1g11000 mRNA, complete cds
          Length = 1722

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 tcctctttcattttctcaag 532
           ||||||||||||||||||||
Sbjct: 185 tcctctttcattttctcaag 166
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>emb|X87372.1|LESODCC L.esculentum  SodCc;Le;2 gene
          Length = 11053

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 564  gtgaaatgttacagaaataa 583
            ||||||||||||||||||||
Sbjct: 2441 gtgaaatgttacagaaataa 2422
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>gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, complete sequence
          Length = 138073

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 512    ttcctctttcattttctcaa 531
              ||||||||||||||||||||
Sbjct: 128417 ttcctctttcattttctcaa 128398
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>gb|AC095060.3| Homo sapiens BAC clone RP11-436F23 from 4, complete sequence
          Length = 111259

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 567    aaatgttacagaaataagca 586
              ||||||||||||||||||||
Sbjct: 105262 aaatgttacagaaataagca 105281
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>gb|AC018684.3| Homo sapiens BAC clone RP11-424H16 from 10, complete sequence
          Length = 175968

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 566   gaaatgttacagaaataagc 585
             ||||||||||||||||||||
Sbjct: 60297 gaaatgttacagaaataagc 60316
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>ref|XM_686478.1| PREDICTED: Danio rerio similar to [Segment 2 of 2] Traf2 and NCK
           interacting kinase (LOC563112), mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 454 agttcagcccattgatgaag 473
           ||||||||||||||||||||
Sbjct: 125 agttcagcccattgatgaag 144
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>gb|AC157651.3| Mus musculus BAC clone RP24-363O21 from chromosome 6, complete sequence
          Length = 171141

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 539   tggatctgtaccattcacttctga 562
             ||||||||||| ||||||||||||
Sbjct: 90166 tggatctgtacaattcacttctga 90189
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 394      agataagagagggtgaaagg 413
                ||||||||||||||||||||
Sbjct: 22438698 agataagagagggtgaaagg 22438717
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 53      ttggagagagaataagtgaa 72
               ||||||||||||||||||||
Sbjct: 9464305 ttggagagagaataagtgaa 9464324
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>gb|AC113052.10| Mus musculus chromosome 5, clone RP23-250D22, complete sequence
          Length = 193698

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 510    acttcctctttcattttctcaagg 533
              ||||||||||||| ||||||||||
Sbjct: 143809 acttcctctttcagtttctcaagg 143786
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>gb|AF369565.1| Arabidopsis thaliana membrane protein Mlo4 mRNA, complete cds
          Length = 1953

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 513 tcctctttcattttctcaag 532
           ||||||||||||||||||||
Sbjct: 237 tcctctttcattttctcaag 218
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>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0059O19
          Length = 144386

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttggagagagaataagtgaa 72
             ||||||||||||||||||||
Sbjct: 51927 ttggagagagaataagtgaa 51946
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>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete
              sequences
          Length = 220133

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ctcattagcatctcattcat 499
              ||||||||||||||||||||
Sbjct: 199540 ctcattagcatctcattcat 199521
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>dbj|AP004586.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0493A04
          Length = 149367

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   agataagagagggtgaaagg 413
             ||||||||||||||||||||
Sbjct: 33626 agataagagagggtgaaagg 33645
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>gb|AY106566.1| Zea mays PCO099616 mRNA sequence
          Length = 499

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 98  tcgaccccttcatcgggcacggagttgggacgatcttcca 137
           ||||||||||| | |||||||| ||||||| ||| |||||
Sbjct: 445 tcgaccccttcgtggggcacggcgttgggaggatgttcca 484
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>dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, section 49/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ctcattagcatctcattcat 499
              ||||||||||||||||||||
Sbjct: 143191 ctcattagcatctcattcat 143172
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>gb|AC144778.3| Mus musculus BAC clone RP23-278A22 from 6, complete sequence
          Length = 187115

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 539  tggatctgtaccattcacttctga 562
            ||||||||||| ||||||||||||
Sbjct: 6806 tggatctgtacaattcacttctga 6829
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>dbj|AP000240.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
              clone:B175P11, complete sequence
          Length = 176099

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    ctcattagcatctcattcat 499
              ||||||||||||||||||||
Sbjct: 133548 ctcattagcatctcattcat 133529
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>dbj|AP000200.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B355D16-T1073, segment 6/8, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   ctcattagcatctcattcat 499
             ||||||||||||||||||||
Sbjct: 34800 ctcattagcatctcattcat 34819
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>dbj|AP000096.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             B335D16-P10G11 region, segment 6/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   ctcattagcatctcattcat 499
             ||||||||||||||||||||
Sbjct: 34800 ctcattagcatctcattcat 34819


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,864,938
Number of Sequences: 3902068
Number of extensions: 4864938
Number of successful extensions: 96217
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96054
Number of HSP's gapped (non-prelim): 163
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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