ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4m14 |
|---|---|
| Clone Library Name | barley_pub |
>KPYC_SOLTU (P22200) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)| Length = 510 Score = 98.6 bits (244), Expect = 1e-20 Identities = 51/62 (82%), Positives = 54/62 (87%) Frame = +2 Query: 41 YRGLIPLLAEGSAKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICT 220 YRGLIPLL EGSAKATDSESTE IL+AALKSAV + LCK GDAVV LHRIG ASVIKIC Sbjct: 449 YRGLIPLLGEGSAKATDSESTEVILEAALKSAVTRGLCKPGDAVVALHRIGSASVIKICV 508 Query: 221 VQ 226 V+ Sbjct: 509 VK 510
>KPYC_SOYBN (Q42806) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)| Length = 511 Score = 96.7 bits (239), Expect = 4e-20 Identities = 48/62 (77%), Positives = 54/62 (87%) Frame = +2 Query: 41 YRGLIPLLAEGSAKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICT 220 YRGLIP+L EGSAKATD+ESTE IL+AALKSA ++ LCK GDAVV LHRIG ASVIKIC Sbjct: 450 YRGLIPILGEGSAKATDAESTEVILEAALKSATERALCKPGDAVVALHRIGAASVIKICI 509 Query: 221 VQ 226 V+ Sbjct: 510 VK 511
>KPYC_TOBAC (Q42954) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK)| Length = 508 Score = 75.9 bits (185), Expect = 7e-14 Identities = 38/62 (61%), Positives = 47/62 (75%) Frame = +2 Query: 41 YRGLIPLLAEGSAKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICT 220 +RGL+P+L GSA+A+ ESTEE L AL+ A K LCK GD+VV LHR+G ASVIKI T Sbjct: 447 FRGLVPVLHAGSARASHEESTEEALDFALQHAKTKGLCKQGDSVVALHRVGTASVIKIVT 506 Query: 221 VQ 226 V+ Sbjct: 507 VK 508
>KPYC_ARATH (O65595) Probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)| (PK) Length = 497 Score = 70.1 bits (170), Expect = 4e-12 Identities = 37/62 (59%), Positives = 45/62 (72%) Frame = +2 Query: 41 YRGLIPLLAEGSAKATDSESTEEILQAALKSAVKKQLCKAGDAVVVLHRIGVASVIKICT 220 YRGL+P+L GSA+A+ ESTEE L+ A + KKQLCK GD+VV L R G A VIKI T Sbjct: 436 YRGLVPVLYAGSARASIDESTEETLEFASEYGKKKQLCKTGDSVVALFRTGNAIVIKILT 495 Query: 221 VQ 226 V+ Sbjct: 496 VK 497
>BCOR_HUMAN (Q6W2J9) BCoR protein (BCL-6 corepressor)| Length = 1755 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 243 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI 109 +P H+ I + A+PMR T +ASPA+ AD S W++ Sbjct: 247 LPPPHYVGPHIPSSLASPMRLSTPSASPAIPPLVHCADKSLPWKM 291
>ATS1_HUMAN (Q9UHI8) ADAMTS-1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 1) (ADAM-TS 1) (ADAM-TS1) (METH-1) Length = 967 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -1 Query: 164 LQPCRAASSQPT*AQPGGSPPSTLSLWPWRSLRQGAGSGLCXI 36 +QP AAS + A PG PP+ L R RQG G C + Sbjct: 158 IQPLPAASERLATAAPGEKPPAPLQFHLLRRNRQGDVGGTCGV 200
>KPYK_DROME (O62619) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 533 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +2 Query: 41 YRGLIPLLAEGSAKATDSESTEEILQAALKSAVKKQLCKAGDAVVVL----HRIGVASVI 208 YRGL+PL+ + + + +Q L+ K K GD+VVV+ G + I Sbjct: 468 YRGLVPLIYKEPGLGDWLKDVDVRVQFGLQVGKKNGFIKTGDSVVVVTGWKQGSGFTNTI 527 Query: 209 KICTVQ 226 +I TV+ Sbjct: 528 RIVTVE 533
>NGL1_HUMAN (Q9HCJ2) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich| repeat-containing protein 4C) Length = 640 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +3 Query: 255 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 416 +P C W+ W D+ PS CC L GR + ++ Y+ YAP Sbjct: 301 NPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354
>NGL1_MOUSE (Q8C031) Netrin-G1 ligand precursor (NGL-1) (Leucine-rich| repeat-containing protein 4C) Length = 640 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = +3 Query: 255 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 416 +P C W+ W D+ PS CC L GR + ++ Y+ YAP Sbjct: 301 NPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAP 354
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 29.3 bits (64), Expect = 7.4 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -2 Query: 376 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 257 SPLP LP+ + QQ+A+ T T Q P GPG Sbjct: 500 SPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPG 539
>CCR5_ATEGE (Q95NC4) C-C chemokine receptor type 5 (C-C CKR-5) (CC-CKR-5)| (CCR-5) (CCR5) (CD195 antigen) Length = 352 Score = 29.3 bits (64), Expect = 7.4 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +3 Query: 330 CCIDPIRAGKLGGRGLRYIELFYYRWYAPCSMVCGRCHACTIF 458 CC++PI +G + Y+ +F+ + A C C C+IF Sbjct: 290 CCVNPIIYAFVGEKFRNYLLVFFQKHIAKCF-----CECCSIF 327
>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)| Length = 1759 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = -3 Query: 243 MPGGHHWTVQILMTEATPMRCRTTTASPALQSCFFTADLSAAWRI-----SSVDSES 88 +P H+ I + A+PMR T +AS A+ +D S W++ + VDS S Sbjct: 247 LPPPHYVNPHIPSSLASPMRLSTPSASAAIPPLVHCSDKSLPWKMGVNPGNPVDSHS 303
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -2 Query: 376 SPLPPNLPARIGSMQQTATDGTISTCFHKTQVSPRQQGPG 257 SPLP LP+ + QQ+A+ T T Q P GPG Sbjct: 502 SPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPG 541
>LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B precursor| Length = 713 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = +3 Query: 255 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 416 +P C W+ W + VPS CC L GR + ++ ++ YAP Sbjct: 311 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 364
>LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 gamma 2 subunit)| (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t chain) Length = 1191 Score = 28.9 bits (63), Expect = 9.6 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 9/69 (13%) Frame = -3 Query: 222 TVQILMTEATPMRCRTTTASPALQSCFFTAD--LSAAWRISSVDSESVAL-------AEP 70 TVQ+++TEA R T+A +Q T D L + SVD E + L A+ Sbjct: 1071 TVQLVITEAQQADARATSAGVTIQDTLNTLDGILHLIDQPGSVDEEGMMLLEQGLFQAKT 1130 Query: 69 SARSGIRPL 43 S +RPL Sbjct: 1131 QINSRLRPL 1139
>TFEB_HUMAN (P19484) Transcription factor EB| Length = 476 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -1 Query: 308 INLFPQDPGFATAARTGVLGSPCPADIT 225 +N++ DP TA+ GV S CPAD+T Sbjct: 191 LNVYSSDPQ-VTASLVGVTSSSCPADLT 217
>LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B precursor| Length = 709 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/54 (27%), Positives = 23/54 (42%) Frame = +3 Query: 255 HPGPCCRGETWVLWKQVDIVPSVAVCCIDPIRAGKLGGRGLRYIELFYYRWYAP 416 +P C W+ W + VPS CC L GR + ++ ++ YAP Sbjct: 313 NPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAP 366 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,257,043 Number of Sequences: 219361 Number of extensions: 1570907 Number of successful extensions: 4610 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4610 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
