>gb|AC158968.3| Mus musculus chromosome 1, clone RP23-411D16, complete sequence
          Length = 183663

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   tctttaagaaaacttttttgc 183
             |||||||||||||||||||||
Sbjct: 59429 tctttaagaaaacttttttgc 59409

>emb|Z73974.1|CEF29F11 Caenorhabditis elegans Cosmid F29F11, complete sequence
          Length = 36258

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   atcaaagattggtaatttcag 137
             |||||||||||||||||||||
Sbjct: 36091 atcaaagattggtaatttcag 36071

>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tctatgtagaaactcttaag 50
             ||||||||||||||||||||
Sbjct: 97872 tctatgtagaaactcttaag 97891

>emb|AL139093.11| Human DNA sequence from clone RP11-440J4 on chromosome 6 Contains a
              serine palmitoyltransferase long chain base subunit 1
              (SPTLC1) pseudogene, complete sequence
          Length = 131995

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    tatgctctttaagaaaactttttt 181
              |||||||||||||||||| |||||
Sbjct: 126299 tatgctctttaagaaaacattttt 126276

>gb|AC149388.1| Phakopsora pachyrhizi clone JGIAFNA-5B14, complete sequence
          Length = 37039

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   tggatcaaagattggtaat 132
             |||||||||||||||||||
Sbjct: 20065 tggatcaaagattggtaat 20047

>gb|AC113092.25| Mus musculus chromosome 6, clone RP23-309N11, complete sequence
          Length = 186431

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 162   ctctttaagaaaacttttt 180
             |||||||||||||||||||
Sbjct: 70347 ctctttaagaaaacttttt 70365

>gb|AY246563.1| Branchiostoma floridae cosmid MPMGc117P1382Q6, partial sequence
          Length = 42246

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 144   gctgacagattgtttatgc 162
             |||||||||||||||||||
Sbjct: 19443 gctgacagattgtttatgc 19461

>emb|CT009708.6| Mouse DNA sequence from clone RP23-82F10 on chromosome 9, complete
              sequence
          Length = 247670

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 164    ctttaagaaaacttttttgcttt 186
              |||||||||||||||||| ||||
Sbjct: 153294 ctttaagaaaactttttttcttt 153272

>gb|AF543300.1| Fusobacterium nucleatum 16S ribosomal RNA gene, partial sequence
          Length = 1479

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 134 tcagatgaacgctgacaga 152
           |||||||||||||||||||
Sbjct: 17  tcagatgaacgctgacaga 35

>emb|CR384088.10| Zebrafish DNA sequence from clone CH211-107K4 in linkage group 15,
             complete sequence
          Length = 156313

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 168   aagaaaacttttttgcttt 186
             |||||||||||||||||||
Sbjct: 79917 aagaaaacttttttgcttt 79935

>gb|AE004338.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section
           246 of 251 of the complete chromosome
          Length = 13647

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 166 ttaagaaaacttttttgct 184
           |||||||||||||||||||
Sbjct: 769 ttaagaaaacttttttgct 787

>emb|AL392044.7| Human DNA sequence from clone RP11-195E11 on chromosome 9 Contains the
             5' end of a novel gene (MGC21981), three novel genes and a
             CpG island, complete sequence
          Length = 167206

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 162   ctctttaagaaaacttttttgct 184
             |||||||||||||||||| ||||
Sbjct: 46777 ctctttaagaaaacttttctgct 46755

>emb|AL359757.21| Human DNA sequence from clone RP11-165I9 on chromosome 13q12.11-12.3
             Contains the PABPC3 gene for poly(A) binding protein,
             cytoplasmic 3, the gene for a novel protein (FLJ30487), a
             pseudogene similar to part of 60S ribosomal protein L23a
             (RPL23A), 4 novel genes and 4 CpG islands, complete
             sequence
          Length = 187066

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 168   aagaaaacttttttgcttt 186
             |||||||||||||||||||
Sbjct: 80700 aagaaaacttttttgcttt 80682

>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the
              3' end of a novel gene, the CENJP gene for centromere
              protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a
              pseudogene similar to part of solute carrier family 25
              (mitochondrial carrier; ornithine transporter) member 15
              (SLC25A15), a TPTE and PTEN homologous inositol lipid
              phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34
              (RPL34) pseudogene and 2 CpG islands, complete sequence
          Length = 167319

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 163    tctttaagaaaactttttt 181
              |||||||||||||||||||
Sbjct: 151368 tctttaagaaaactttttt 151386

>emb|AL136360.21| Human DNA sequence from clone RP11-317B7 on chromosome 4, complete
             sequence
          Length = 103727

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 163   tctttaagaaaactttttt 181
             |||||||||||||||||||
Sbjct: 41239 tctttaagaaaactttttt 41257

>gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, complete sequence
          Length = 121054

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 118   tcaaagattggtaatttca 136
             |||||||||||||||||||
Sbjct: 93683 tcaaagattggtaatttca 93701

>gb|AC012060.12| Homo sapiens chromosome , clone RP11-19A24, complete sequence
          Length = 164179

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    tcaaagattggtaatttca 136
              |||||||||||||||||||
Sbjct: 142061 tcaaagattggtaatttca 142043

>gb|AC080121.4| Homo sapiens chromosome 15, clone RP13-500A21, complete sequence
          Length = 154987

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    tcaaagattggtaatttca 136
              |||||||||||||||||||
Sbjct: 128636 tcaaagattggtaatttca 128618

>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 168     aagaaaacttttttgcttt 186
               |||||||||||||||||||
Sbjct: 1576484 aagaaaacttttttgcttt 1576502

>gb|AC012377.5|AC012377 Homo sapiens chromosome 15 clone RP11-325N19 map 15q14, complete
             sequence
          Length = 197782

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 40    aaactcttaagcaggatttaaca 62
             |||||||| ||||||||||||||
Sbjct: 92993 aaactcttgagcaggatttaaca 92971

>gb|AF329653.1|AF329653 Rattus norvegicus liver fatty acid-binding protein gene promotor,
            partial sequence
          Length = 3501

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   tgctgatctgactactcca 110
            |||||||||||||||||||
Sbjct: 2342 tgctgatctgactactcca 2360

>gb|DQ060036.1| Homo sapiens polymerase (DNA directed) nu (POLN) gene, complete cds
          Length = 161222

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 163   tctttaagaaaactttttt 181
             |||||||||||||||||||
Sbjct: 98776 tctttaagaaaactttttt 98794

>gb|AC023908.6|AC023908 Homo sapiens chromosome 15 clone RP11-37C7 map 15q14, complete sequence
          Length = 169670

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 40     aaactcttaagcaggatttaaca 62
              |||||||| ||||||||||||||
Sbjct: 168159 aaactcttgagcaggatttaaca 168137

>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster
          Length = 152740

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 93     gctgatctgactactccagagtg 115
              ||||||||||| |||||||||||
Sbjct: 140358 gctgatctgaccactccagagtg 140380

>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 198488

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 93    gctgatctgactactccagagtg 115
             ||||||||||| |||||||||||
Sbjct: 29470 gctgatctgaccactccagagtg 29492

>gb|AF165139.6| Homo sapiens chromosome 9 clone RP11-44L18 map unmapped, complete
             sequence
          Length = 153942

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 162   ctctttaagaaaacttttttgct 184
             |||||||||||||||||| ||||
Sbjct: 56201 ctctttaagaaaacttttctgct 56223

>emb|X74408.1|FN16SRNAB F.necrophorum (FnS-40) gene for 16S rRNA
          Length = 1499

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 134 tcagatgaacgctgacaga 152
           |||||||||||||||||||
Sbjct: 17  tcagatgaacgctgacaga 35

>gb|AY106822.1| Zea mays PCO104784 mRNA sequence
          Length = 728

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                              
Query: 95  tgatctgactactccagagtggatcaaagattggt 129
           |||||| ||| |||||||||||||| | |||||||
Sbjct: 209 tgatctcactgctccagagtggatccaggattggt 243

>emb|Z68226.1|HSL141A8 Human DNA sequence from clone LA04NC01-141A8 on chromosome 4, complete
             sequence
          Length = 41569

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 163   tctttaagaaaactttttt 181
             |||||||||||||||||||
Sbjct: 31263 tctttaagaaaactttttt 31281

>emb|Z67997.1|HSL206D7 Human DNA sequence from clone LA04NC01-206D7 on chromosome 4,
            complete sequence
          Length = 19068

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 163  tctttaagaaaactttttt 181
            |||||||||||||||||||
Sbjct: 2376 tctttaagaaaactttttt 2394

>gb|AC000399.1|AC000399 Genomic sequence from Mouse 9, complete sequence
          Length = 140554

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 164   ctttaagaaaacttttttgcttt 186
             |||||||||||||||||| ||||
Sbjct: 82472 ctttaagaaaactttttttcttt 82494

>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 163    tctttaagaaaactttttt 181
              |||||||||||||||||||
Sbjct: 137187 tctttaagaaaactttttt 137169

>emb|AL603792.12| Mouse DNA sequence from clone RP23-328B4 on chromosome 11, complete
              sequence
          Length = 203030

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     tagaaactcttaagcagga 55
              |||||||||||||||||||
Sbjct: 178613 tagaaactcttaagcagga 178595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,902,787
Number of Sequences: 3902068
Number of extensions: 1902787
Number of successful extensions: 127353
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127255
Number of HSP's gapped (non-prelim): 98
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)