ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4m03 |
|---|---|
| Clone Library Name | barley_pub |
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 53.9 bits (128), Expect = 1e-07 Identities = 24/51 (47%), Positives = 30/51 (58%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KGL+GRQNRTPT R++PFL K GPLL++CG+DC Sbjct: 999 KGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/51 (49%), Positives = 30/51 (58%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KGLLG+Q+R PT RVNPF++K DGP+LE CGLDC Sbjct: 1037 KGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 48.1 bits (113), Expect = 6e-06 Identities = 25/51 (49%), Positives = 29/51 (56%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KGLLG+Q+R PT RVNPF+AK GP+LE CGLDC Sbjct: 1034 KGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 48.1 bits (113), Expect = 6e-06 Identities = 25/51 (49%), Positives = 29/51 (56%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KGLLG+Q+R PT RVNPF+AK GP+LE CGLDC Sbjct: 1019 KGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 47.8 bits (112), Expect = 8e-06 Identities = 21/51 (41%), Positives = 28/51 (54%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KGL+GRQNRTPT R++PF+ KT GP +CG++C Sbjct: 976 KGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KGL+GRQNRTPT R++PF ++ GP + ECG++C Sbjct: 1015 KGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 43.9 bits (102), Expect = 1e-04 Identities = 22/51 (43%), Positives = 29/51 (56%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTDGPLLEECGLDC 155 KG+LG+Q++ PT RVNPF+AK GP+LE CGL+C Sbjct: 1033 KGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKTD 122 KGL+GRQNRTPT R+NPF++KTD Sbjct: 933 KGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTD 972
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 35.8 bits (81), Expect = 0.030 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFLAKT 119 KGLLGRQNRTPT R+NPF++ T Sbjct: 1017 KGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVSTT 1055
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 33.5 bits (75), Expect = 0.15 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 3 KGLLGRQNRTPTXXXXXXXXXXXXXXXXXXRVNPFL 110 KGLLGRQNRTPT R+NPF+ Sbjct: 1030 KGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFV 1065
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 30.0 bits (66), Expect = 1.7 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -1 Query: 110 EERVHTHPQERDDRSQQDGPDDHDRRGPVLPSQQ 9 ++R RD R ++D DD DRRGP L S++ Sbjct: 1271 DDRRRERDDRRDLRERRDLRDDRDRRGPPLRSER 1304
>MEX1_ORYSA (Q7XTQ5) Maltose excess protein 1-like, chloroplast precursor| Length = 399 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -3 Query: 171 LSSPRCSPDRTPPEEGRRSWRGKGSHAPTGA 79 +SS R PP GRR WR G+ AP+ A Sbjct: 5 VSSVRLPLRAAPPLYGRREWRADGARAPSPA 35
>PDLI2_MOUSE (Q8R1G6) PDZ and LIM domain protein 2 (PDZ-LIM protein mystique)| Length = 349 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 192 STCFDPILSSPR-CSPDRTPP 133 S CF P+ SPR CSP TPP Sbjct: 120 SACFSPVSLSPRPCSPFSTPP 140
>TLE3_MOUSE (Q08122) Transducin-like enhancer protein 3 (ESG) (Grg-3)| Length = 771 Score = 28.9 bits (63), Expect = 3.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 168 SSPRCSPDRTPPEEGRRSWRGKGSHAPT 85 ++PR SP +PPE G RG APT Sbjct: 257 ATPRVSPAHSPPENGLDKARGLKKDAPT 284
>TLE3_RAT (Q9JIT3) Transducin-like enhancer protein 3 (rTLE3)| Length = 764 Score = 28.9 bits (63), Expect = 3.7 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -3 Query: 168 SSPRCSPDRTPPEEGRRSWRGKGSHAPT 85 ++PR SP +PPE G RG APT Sbjct: 258 ATPRVSPAHSPPENGLDKARGLKKDAPT 285
>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor| Length = 332 Score = 28.9 bits (63), Expect = 3.7 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -1 Query: 224 HKNTFKITPHDRLVLIQSFHLLGAVQTALLQ-KRAVGLGEERV 99 H K+TP + VLI F L G + L+Q + +G+ ERV Sbjct: 266 HNLLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERV 308
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 80 RDDRSQQDGPDDHDRRGPVLPSQQ 9 RD R ++D DD DRRGP L S++ Sbjct: 1245 RDLRDRRDLRDDRDRRGPPLRSER 1268
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)| Length = 634 Score = 28.1 bits (61), Expect = 6.3 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -1 Query: 158 GAVQTALLQKRAVGLGEERVHTHPQERDDRSQQDGPDDHDRRGPV-LPSQQ 9 G + AL+QKR+ +E +PQ++ + D P + P P QQ Sbjct: 29 GETEEALIQKRSYDYYQEPCDDYPQQQQQQEPCDYPQQQQQEEPCDYPQQQ 79
>VP13A_HUMAN (Q96RL7) Vacuolar protein sorting 13A (Chorein)| (Chorea-acanthocytosis protein) Length = 3174 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -1 Query: 215 TFKITPHDRLVLIQSFHLLGAVQTALLQKRAVGLGEE 105 TFKI VLI+ +HL+G + ++++ +GLG E Sbjct: 880 TFKIRFEVPKVLIEFYHLVGDCELSVVEILVLGLGAE 916
>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated| protein of 350 kDa) Length = 3117 Score = 27.7 bits (60), Expect = 8.3 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Frame = -1 Query: 191 RLVLIQSFHLLGAVQTAL-LQKRAVGLGEERVHTHPQE--RDDRSQQDGPDDHDRRGP 27 +L+L Q + QT + LQ++ GE ++ +H + +D+++ GP D + R P Sbjct: 1772 QLILKQQEEIEKIRQTTIKLQEKLKSAGESKLDSHSDDDTKDNKATSPGPTDLETRSP 1829 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,561,266 Number of Sequences: 219361 Number of extensions: 755540 Number of successful extensions: 1997 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1989 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
