ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4m03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY483152.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA2) mRNA, complete cds Length = 3907 Score = 456 bits (230), Expect = e-125 Identities = 230/230 (100%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3191 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 3250 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3251 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 3310 Query: 122 cggccctcttctggaggagtgcggtctggactgcacctaggagatgaaaggattggatca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3311 cggccctcttctggaggagtgcggtctggactgcacctaggagatgaaaggattggatca 3370 Query: 182 aaacaagtcgatcatgtggagtaattttgaaggtgtttttgtgcccataa 231 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3371 aaacaagtcgatcatgtggagtaattttgaaggtgtttttgtgcccataa 3420
>gb|BT019129.1| Zea mays clone Contig756.F mRNA sequence Length = 754 Score = 172 bits (87), Expect = 3e-40 Identities = 138/155 (89%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 |||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 396 caagggtctggtggggaggcagaacaggacgccgacgatcgtcatcgtctggtccatcct 455 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 | |||| |||||| |||||||||||||||| || || |||| ||||||||||||| ||| Sbjct: 456 gctggcctcgatcttctcgctcctgtgggtccgcgtcgacccgttcctcgccaagagcga 515 Query: 122 cggccctcttctggaggagtgcggtctggactgca 156 |||||| || ||||||||||| || |||||||||| Sbjct: 516 cggcccgctcctggaggagtgtggcctggactgca 550
>gb|AY103701.1| Zea mays PCO120363 mRNA sequence Length = 3788 Score = 172 bits (87), Expect = 3e-40 Identities = 138/155 (89%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 |||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 3324 caagggtctggtggggaggcagaacaggacgccgacgatcgtcatcgtctggtccatcct 3383 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 | |||| |||||| |||||||||||||||| || || |||| ||||||||||||| ||| Sbjct: 3384 gctggcctcgatcttctcgctcctgtgggtccgcgtcgacccgttcctcgccaagagcga 3443 Query: 122 cggccctcttctggaggagtgcggtctggactgca 156 |||||| || ||||||||||| || |||||||||| Sbjct: 3444 cggcccgctcctggaggagtgtggcctggactgca 3478
>gb|AF200532.1|AF200532 Zea mays cellulose synthase-8 (CesA-8) mRNA, complete cds Length = 3812 Score = 165 bits (83), Expect = 8e-38 Identities = 137/155 (88%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 |||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 3339 caagggtctggtggggaggcagaacaggacgccgacgatcgtcatcgtctggtccatcct 3398 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 | |||| |||||| |||||||||||||||| || || |||| ||||||||||||| | | Sbjct: 3399 gctggcctcgatcttctcgctcctgtgggtccgcgtcgacccgttcctcgccaagagcaa 3458 Query: 122 cggccctcttctggaggagtgcggtctggactgca 156 |||||| || ||||||||||| || |||||||||| Sbjct: 3459 cggcccgctcctggaggagtgtggcctggactgca 3493
>gb|DQ160225.1| Physcomitrella patens cellulose synthase catalytic subunit (CesA7) mRNA, complete cds Length = 4016 Score = 87.7 bits (44), Expect = 1e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 3 aagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctg 62 ||||||||| ||||| | |||||| |||| ||||||||||||||||| ||||| |||||| Sbjct: 3269 aagggtctgatgggacgacagaaccggacaccgacgatcgtgatcgtgtggtcgatcctg 3328 Query: 63 ttggcttcgatcatctcgctcctgtgggtgcg 94 |||| || ||| ||||||| ||||||||||| Sbjct: 3329 ctggcgtccatcttctcgcttctgtgggtgcg 3360
>gb|DQ160224.1| Physcomitrella patens cellulose synthase catalytic subunit (CesA6) mRNA, complete cds Length = 4070 Score = 87.7 bits (44), Expect = 1e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 3 aagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctg 62 ||||||||| ||||| | |||||| |||| ||||||||||||||||| ||||| |||||| Sbjct: 3296 aagggtctgatgggacgacagaaccggacaccgacgatcgtgatcgtgtggtcgatcctg 3355 Query: 63 ttggcttcgatcatctcgctcctgtgggtgcg 94 |||| || ||| ||||||| ||||||||||| Sbjct: 3356 ctggcgtccatcttctcgcttctgtgggtgcg 3387
>ref|XM_470347.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3905 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 3133 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 3192 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 3193 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 3252 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 3253 gaggagtgtggtttggattgcaactag 3279
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 34878656 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 34878715 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 34878716 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 34878775 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 34878776 gaggagtgtggtttggattgcaactag 34878802
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 34968728 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 34968787 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 34968788 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 34968847 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 34968848 gaggagtgtggtttggattgcaactag 34968874
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Minus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 136824 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 136765 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 136764 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 136705 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 136704 gaggagtgtggtttggattgcaactag 136678
>dbj|AK100877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127C10, full insert sequence Length = 4029 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 3303 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 3362 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 3363 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 3422 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 3423 gaggagtgtggtttggattgcaactag 3449
>dbj|AK101178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029A22, full insert sequence Length = 2325 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 1928 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 1987 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 1988 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 2047 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 2048 gaggagtgtggtttggattgcaactag 2074
>dbj|AK060814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H07, full insert sequence Length = 1180 Score = 85.7 bits (43), Expect = 6e-14 Identities = 121/147 (82%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| ||| ||||||| ||| Sbjct: 451 ggaaggcaaaacaggacaccaacaattgtcattgtctggtccattctgctggcttcaatc 510 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||| ||||| || | | |||||||| || |||| ||||||||||||||| Sbjct: 511 ttctcgctcctctgggtccggattgatcctttcctggcaaagaatgacggccctcttctg 570 Query: 135 gaggagtgcggtctggactgcacctag 161 |||||||| ||| |||| |||| |||| Sbjct: 571 gaggagtgtggtttggattgcaactag 597
>gb|AF200530.1|AF200530 Zea mays cellulose synthase-6 (CesA-6) mRNA, complete cds Length = 3538 Score = 75.8 bits (38), Expect = 6e-11 Identities = 77/90 (85%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 |||||||||| | || |||||||||||||| || ||||| || || |||||||||||||| Sbjct: 3063 caagggtctggttgggaggcagaacaggacgccaacgattgtcattgtctggtccatcct 3122 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 ||||||||||| ||||||| || ||||| Sbjct: 3123 cctggcttcgatcttctcgctgctttgggt 3152
>gb|AY104730.1| Zea mays PCO100501 mRNA sequence Length = 3783 Score = 75.8 bits (38), Expect = 6e-11 Identities = 77/90 (85%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 |||||||||| | || |||||||||||||| || ||||| || || |||||||||||||| Sbjct: 3296 caagggtctggttgggaggcagaacaggacgccaacgattgtcattgtctggtccatcct 3355 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 ||||||||||| ||||||| || ||||| Sbjct: 3356 cctggcttcgatcttctcgctgctttgggt 3385
>gb|DQ020215.1| Bambusa oldhamii cellulose synthase BoCesA7 mRNA, partial cds Length = 2997 Score = 73.8 bits (37), Expect = 2e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 ||||| || ||||||||||| || || || || ||||||||||| ||| ||||||| ||| Sbjct: 2234 ggaagacaaaacaggaccccaacaattgtcattgtctggtccattctgctggcttcaatc 2293 Query: 75 atctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccgacggccctcttctg 134 |||||||||||||||| || | | |||||||| || |||| || ||||| |||||| Sbjct: 2294 ttctcgctcctgtgggtccggatcgatcctttcctggcaaagaatgatggcccgcttctg 2353 Query: 135 gaggagtgcggtctgga 151 ||||| || |||||||| Sbjct: 2354 gaggaatgtggtctgga 2370
>gb|AF200531.1|AF200531 Zea mays cellulose synthase-7 (CesA-7) mRNA, complete cds Length = 3968 Score = 73.8 bits (37), Expect = 2e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || ||||| || |||||||||||||| ||| ||||||| ||| Sbjct: 3257 ggaaggcaaaacaggacaccaacgattgtcatcgtctggtccattctgctggcttcaatc 3316 Query: 75 atctcgctcctgtgggt 91 |||||||||| ||||| Sbjct: 3317 ttctcgctcctttgggt 3333
>gb|AY103655.1| Zea mays PCO096398 mRNA sequence Length = 3897 Score = 73.8 bits (37), Expect = 2e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || ||||| || |||||||||||||| ||| ||||||| ||| Sbjct: 3270 ggaaggcaaaacaggacaccaacgattgtcatcgtctggtccattctgctggcttcaatc 3329 Query: 75 atctcgctcctgtgggt 91 |||||||||| ||||| Sbjct: 3330 ttctcgctcctttgggt 3346
>ref|XM_477282.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3746 Score = 60.0 bits (30), Expect = 3e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||| || | |||||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 3185 caagggtttggttggaaggcaaaacaggacaccaacgattgttatcgtctggtccattct 3244 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 ||||||| ||| |||| || || ||||| || | | |||||||| || |||| | Sbjct: 3245 actggcttcaatcttctcacttctatgggtccggatcgatcctttccttgcgaagaataa 3304 Query: 122 cggccctcttctggaggagtgcggtctgga 151 ||||||||||||||||| || |||||||| Sbjct: 3305 tggccctcttctggaggaatgtggtctgga 3334
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 3e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||| || | |||||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 8533236 caagggtttggttggaaggcaaaacaggacaccaacgattgttatcgtctggtccattct 8533295 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 ||||||| ||| |||| || || ||||| || | | |||||||| || |||| | Sbjct: 8533296 actggcttcaatcttctcacttctatgggtccggatcgatcctttccttgcgaagaataa 8533355 Query: 122 cggccctcttctggaggagtgcggtctgga 151 ||||||||||||||||| || |||||||| Sbjct: 8533356 tggccctcttctggaggaatgtggtctgga 8533385 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Minus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 13688708 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 13688649 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 13688648 ttctcactcctctgggt 13688632
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0669H03 Length = 167878 Score = 60.0 bits (30), Expect = 3e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||| || | |||||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 65704 caagggtttggttggaaggcaaaacaggacaccaacgattgttatcgtctggtccattct 65763 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 ||||||| ||| |||| || || ||||| || | | |||||||| || |||| | Sbjct: 65764 actggcttcaatcttctcacttctatgggtccggatcgatcctttccttgcgaagaataa 65823 Query: 122 cggccctcttctggaggagtgcggtctgga 151 ||||||||||||||||| || |||||||| Sbjct: 65824 tggccctcttctggaggaatgtggtctgga 65853
>dbj|AK100914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D04, full insert sequence Length = 3746 Score = 60.0 bits (30), Expect = 3e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||| || | |||||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 3185 caagggtttggttggaaggcaaaacaggacaccaacgattgttatcgtctggtccattct 3244 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 ||||||| ||| |||| || || ||||| || | | |||||||| || |||| | Sbjct: 3245 actggcttcaatcttctcacttctatgggtccggatcgatcctttccttgcgaagaataa 3304 Query: 122 cggccctcttctggaggagtgcggtctgga 151 ||||||||||||||||| || |||||||| Sbjct: 3305 tggccctcttctggaggaatgtggtctgga 3334
>dbj|AK059649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C05, full insert sequence Length = 1335 Score = 60.0 bits (30), Expect = 3e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||| || | |||||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 522 caagggtttggttggaaggcaaaacaggacaccaacgattgttatcgtctggtccattct 581 Query: 62 gttggcttcgatcatctcgctcctgtgggtgcgtgtgaaccctttcctcgccaagaccga 121 ||||||| ||| |||| || || ||||| || | | |||||||| || |||| | Sbjct: 582 actggcttcaatcttctcacttctatgggtccggatcgatcctttccttgcgaagaataa 641 Query: 122 cggccctcttctggaggagtgcggtctgga 151 ||||||||||||||||| || |||||||| Sbjct: 642 tggccctcttctggaggaatgtggtctgga 671
>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08, complete sequence Length = 144781 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 128450 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 128391 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 128390 cctcgcgtcgatcttctcccttctgtgggt 128361
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 17293 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 17234 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 17233 cctcgcgtcgatcttctcccttctgtgggt 17204
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Minus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 4506826 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 4506767 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 4506766 cctcgcgtcgatcttctcccttctgtgggt 4506737
>dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085K01, full insert sequence Length = 3768 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 3258 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 3317 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 3318 cctcgcgtcgatcttctcccttctgtgggt 3347
>dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034D20, full insert sequence Length = 3897 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 3258 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 3317 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 3318 cctcgcgtcgatcttctcccttctgtgggt 3347
>dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125F05, full insert sequence Length = 3801 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 3258 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 3317 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 3318 cctcgcgtcgatcttctcccttctgtgggt 3347
>dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P03, full insert sequence Length = 3732 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 3258 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 3317 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 3318 cctcgcgtcgatcttctcccttctgtgggt 3347
>dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B06, full insert sequence Length = 3764 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 3258 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 3317 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 3318 cctcgcgtcgatcttctcccttctgtgggt 3347
>dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013125H24, full insert sequence Length = 3802 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 3258 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 3317 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 3318 cctcgcgtcgatcttctcccttctgtgggt 3347
>dbj|AK060838.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D02, full insert sequence Length = 1426 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 935 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 994 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 995 cctcgcgtcgatcttctcccttctgtgggt 1024
>dbj|AK060079.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C08, full insert sequence Length = 1097 Score = 52.0 bits (26), Expect = 8e-04 Identities = 74/90 (82%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || ||||| ||||| ||||||||||| ||||| Sbjct: 509 caagggtctcatgggcaggcagaaccgcactccgaccatcgtcatcgtctggtcgatcct 568 Query: 62 gttggcttcgatcatctcgctcctgtgggt 91 | || |||||| |||| || |||||||| Sbjct: 569 cctcgcgtcgatcttctcccttctgtgggt 598
>gb|DQ020214.1| Bambusa oldhamii cellulose synthase BoCesA6 mRNA, partial cds Length = 2867 Score = 50.1 bits (25), Expect = 0.003 Identities = 64/77 (83%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || ||||| || ||||||||||| || ||||||| ||| Sbjct: 2418 ggaaggcaaaacaggacgccaacaatcgtcattgtctggtccattcttctggcttcaatc 2477 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 2478 ttctcactcctctgggt 2494
>gb|AF200525.1|AF200525 Zea mays cellulose synthase-1 (CesA-1) mRNA, complete cds Length = 3752 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||||||||||||| | || || || ||||| || |||||||||||||| Sbjct: 3251 caagggtctcatgggaaggcagaaccgcacaccaacaatcgtcattgtctggtccatcct 3310
>gb|AY110415.1| Zea mays CL1166_1 mRNA sequence Length = 3898 Score = 48.1 bits (24), Expect = 0.013 Identities = 51/60 (85%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||||||||||||| | || || || ||||| || |||||||||||||| Sbjct: 3257 caagggtctcatgggaaggcagaaccgcacaccaacaatcgtcattgtctggtccatcct 3316
>emb|AL645488.6| Human DNA sequence from clone RP11-33J1 on chromosome 1 Contains a CpG island, complete sequence Length = 105641 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 11 gttgggaaggcagaacaggacc 32 |||||||||||||||||||||| Sbjct: 61303 gttgggaaggcagaacaggacc 61282
>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0084P08 Length = 158656 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Minus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 156327 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 156268 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 156267 ttctcactcctctgggt 156251
>dbj|AP004298.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409D09 Length = 150485 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Minus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 39700 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 39641 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 39640 ttctcactcctctgggt 39624
>dbj|AK121193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086F23, full insert sequence Length = 4127 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 3391 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 3450 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 3451 ttctcactcctctgggt 3467
>dbj|AK073561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042D15, full insert sequence Length = 4208 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 3473 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 3532 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 3533 ttctcactcctctgggt 3549
>dbj|AK071976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013085H01, full insert sequence Length = 1867 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 1196 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 1255 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 1256 ttctcactcctctgggt 1272
>dbj|AK067386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F14, full insert sequence Length = 3221 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 2485 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 2544 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 2545 ttctcactcctctgggt 2561
>dbj|AK062154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H11, full insert sequence Length = 1827 Score = 42.1 bits (21), Expect = 0.78 Identities = 63/77 (81%) Strand = Plus / Plus Query: 15 ggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcctgttggcttcgatc 74 |||||||| |||||||| || || || || || ||||||||||| || ||||||| ||| Sbjct: 1091 ggaaggcaaaacaggacgccaacaattgttattgtctggtccattcttctggcttcaatc 1150 Query: 75 atctcgctcctgtgggt 91 |||| ||||| ||||| Sbjct: 1151 ttctcactcctctgggt 1167
>ref|XM_540277.2| PREDICTED: Canis familiaris similar to polymerase (RNA) III (DNA directed) polypeptide C (62kD) (LOC483159), mRNA Length = 1686 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gtctggtccatcctgttggc 67 |||||||||||||||||||| Sbjct: 785 gtctggtccatcctgttggc 766
>gb|BC109972.1| Bos taurus similar to polymerase (RNA) III (DNA directed) polypeptide C (62kD), mRNA (cDNA clone MGC:133926 IMAGE:8047141), complete cds Length = 2199 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gtctggtccatcctgttggc 67 |||||||||||||||||||| Sbjct: 1296 gtctggtccatcctgttggc 1277
>gb|AC164004.3| Mus musculus chromosome 5, clone RP23-58C20, complete sequence Length = 198872 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tgaaccctttcctcgccaag 116 |||||||||||||||||||| Sbjct: 152831 tgaaccctttcctcgccaag 152850
>gb|AF200526.1|AF200526 Zea mays cellulose synthase-2 (CesA-2) mRNA, complete cds Length = 3725 Score = 40.1 bits (20), Expect = 3.1 Identities = 50/60 (83%) Strand = Plus / Plus Query: 2 caagggtctgttgggaaggcagaacaggaccccgacgatcgtgatcgtctggtccatcct 61 ||||||||| |||| ||||||||| | || || || ||||| ||||| ||||||||||| Sbjct: 3244 caagggtctcatgggcaggcagaaccgcacgccaacaatcgtcatcgtttggtccatcct 3303
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tcctcgccaagaccgacggc 125 |||||||||||||||||||| Sbjct: 1424308 tcctcgccaagaccgacggc 1424289
>gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, complete sequence Length = 181047 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tgaaccctttcctcgccaag 116 |||||||||||||||||||| Sbjct: 128473 tgaaccctttcctcgccaag 128454
>ref|NM_001038511.1| Bos taurus similar to polymerase (RNA) III (DNA directed) polypeptide C (62kD) (MGC133926), mRNA Length = 2199 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gtctggtccatcctgttggc 67 |||||||||||||||||||| Sbjct: 1296 gtctggtccatcctgttggc 1277
>gb|AC161414.3| Mus musculus chromosome 1, clone CH36-500J15, complete sequence Length = 165234 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gaaaggattggatcaaaaca 186 |||||||||||||||||||| Sbjct: 68647 gaaaggattggatcaaaaca 68628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,846,465 Number of Sequences: 3902068 Number of extensions: 1846465 Number of successful extensions: 44581 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44443 Number of HSP's gapped (non-prelim): 130 length of query: 239 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 217 effective length of database: 17,147,199,772 effective search space: 3720942350524 effective search space used: 3720942350524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
