ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4l23 |
|---|---|
| Clone Library Name | barley_pub |
>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase| Length = 407 Score = 114 bits (285), Expect = 2e-25 Identities = 54/92 (58%), Positives = 72/92 (78%) Frame = +1 Query: 7 GTRLVDESDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFD 186 G R+ E+DL++Y+ ++D+ Y TY VLDILQ+VFYR++A REAFVEMC+D VQ++TFD Sbjct: 314 GQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFD 373 Query: 187 SYLYKRVVPGNPIEDIKLAVNTIGSLVRAIAL 282 SYLYK VVP NP+ +K+ TIGSL+R AL Sbjct: 374 SYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405
>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase| Length = 391 Score = 58.5 bits (140), Expect = 1e-08 Identities = 28/79 (35%), Positives = 48/79 (60%) Frame = +1 Query: 28 SDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRV 207 +DL+ A F + + +KVL ++Q +Y S+ RE FV +C D VQRMTF+SY+ K++ Sbjct: 304 ADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKM 363 Query: 208 VPGNPIEDIKLAVNTIGSL 264 P++++K+ + L Sbjct: 364 TKFQPLKNLKIGFKNLAHL 382
>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6| Length = 3519 Score = 42.7 bits (99), Expect = 7e-04 Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 12/110 (10%) Frame = -2 Query: 303 ELPHLPAQR-----DG-PDEAADGVDSELDVL--DGVARHDALV---EVAVEGHPLHVVV 157 +LP P QR DG P +A+GVD E D + D V R D++ E+ ++ LH V+ Sbjct: 2554 DLPTYPFQRQRFWLDGSPASSANGVDGEADAMIWDAVEREDSVAVAEELGIDAEALHTVL 2613 Query: 156 GAHLHERLPRRVGAVEHL-LQDVQHLVRWPVEPVELRQVLAQVALVHQPR 10 A R R VEH LQD ++ V W P L +VL L PR Sbjct: 2614 PALSSWRRRR----VEHRRLQDWRYRVEWKPFPAALDEVLGGGWLFVVPR 2659
>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 32.7 bits (73), Expect = 0.77 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = -2 Query: 417 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRDGPDEA 259 LKSVR+A L + S +P R+S V QG +P A +RDG DEA Sbjct: 17 LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71
>RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in renal carcinoma| on chromosome 8) Length = 664 Score = 32.0 bits (71), Expect = 1.3 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 10/96 (10%) Frame = -2 Query: 465 TTSRSTPLPLYSHLLCLKSVRSAADLC-------YTDRSAAASSNPSRMSGTFPVCRRSQ 307 T++R TP Y H LCL+ D C Y + +SN S +G P + Sbjct: 556 TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKDNSNVSNNNGFIPPNETPE 615 Query: 306 GELPHLPAQRDGPDEAADGVDSELDV---LDGVARH 208 + A+ D D D + DV +GV +H Sbjct: 616 EAVREAAAESDRELNEDDSTDCDDDVQRERNGVIQH 651
>BCL2_BOVIN (O02718) Apoptosis regulator Bcl-2| Length = 229 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 118 SGRTPSAGCPAPCTLASRAGRTPPGTCAGRSRPPAA 11 +G P PAP L+S+ GRTP + PPAA Sbjct: 35 AGAAPPGAAPAPGILSSQPGRTPAPSRTSPPPPPAA 70
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 31.6 bits (70), Expect = 1.7 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Frame = +3 Query: 216 QPHRGHQARCQH---HRQPRQGHRAAPGDGEAH 305 + RGHQ + QH H QP GHR G H Sbjct: 173 EQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGH 205
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 30.8 bits (68), Expect = 2.9 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Frame = +3 Query: 27 ERPAQVPGGVRPALLANVQGAGHPAEGVLPLQXXXXXXXXXXXXXXXXXXXXXQLPLQAR 206 ++PAQV G +PA Q G +G P Q Q P Q + Sbjct: 574 QQPAQVQQGQQPAQGQQGQQLGQGQQGQQPGQ-----------------GQQGQQPAQGQ 616 Query: 207 RAGQPHRGHQARCQHHRQPRQGHRA-APGDGE 299 + QP +G QH +QP QG + PG G+ Sbjct: 617 QGQQPGQG-----QHGQQPGQGQQGQQPGQGQ 643
>CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein 2 (CDK5| activator-binding protein C48) Length = 1822 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = +3 Query: 228 GHQARCQHHRQPR--QGHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRIDRYSRDPRP 401 G AR + H Q +G R G+ H ++ ++PE S + L ++ SRDP+P Sbjct: 1324 GKSARVEPHPQNELLKGLRTVEGNLPYHHLLPESPEPSASHALSDDEMSEKSFLSRDPKP 1383
>INAR2_MOUSE (O35664) Interferon-alpha/beta receptor beta chain precursor| (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2) Length = 513 Score = 30.4 bits (67), Expect = 3.8 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = -2 Query: 315 RSQGELPHLPAQ----RDGPDEAADGVDSELDVLDG 220 R+Q LP LP+Q DG E +D DS+ DV DG Sbjct: 474 RTQPPLPSLPSQDLWTEDGSSEKSDTSDSDADVGDG 509
>RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase| Length = 893 Score = 30.0 bits (66), Expect = 5.0 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Frame = -2 Query: 300 LPHLPAQRDGPDEAADGVDSELDVLDGV--------ARHDALVEVAVEGHPLHVVVGAHL 145 LP L +RD GV++EL+ LD + R DAL V E L G Sbjct: 670 LPELREKRDDLQSRVGGVEAELEQLDDLRERRDHLAERVDALESVHDEVSTLESTYGDLR 729 Query: 144 HERLPRRVGAVEHLLQDVQHLV 79 E R V +E +L + LV Sbjct: 730 AELRQRNVEVLERMLNETFDLV 751
>VGLB_PRVIF (P08355) Glycoprotein GII precursor| Length = 913 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -2 Query: 366 AASSNPSRMSGTFPVCRRSQGELPHLPAQRDGPDEAADGVDSELDVLDGV 217 AAS++P+ +G P ++ L + A GP EA DG +LD V Sbjct: 64 AASASPTPGTGATPNDVSAEASLEEIEAFSPGPSEAPDGEYGDLDARTAV 113
>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)| (PDM-1) (dPOU-19) (dOCT1) Length = 601 Score = 30.0 bits (66), Expect = 5.0 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = +3 Query: 273 HRAAPGDGEAHL---VIADTPETSLTSCLGCSKLRRIDRYSRDPRPIERI*GRGDENKEV 443 H A+P D + L ++ TP ++ + + + R I R SR P P++ D+N Sbjct: 9 HTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSRSPSPLQSNASDCDDNNSS 68 Query: 444 MASIERSCLGRTCPIFLYGDVQTSEQFV 527 + + C P Q Q + Sbjct: 69 VGTSSDRCRSPLSPALSLSHQQAKRQLM 96
>VP6_BTV1S (Q03328) VP6 protein (Minor inner core protein VP6)| Length = 328 Score = 30.0 bits (66), Expect = 5.0 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -2 Query: 318 RRSQGELPHLPAQRDGPDE 262 RR QG+ PH AQR+GP+E Sbjct: 207 RRKQGKKPHGDAQREGPEE 225
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 6.5 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 497 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 327 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 6.5 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 497 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 327 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 6.5 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 497 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 327 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 6.5 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -3 Query: 497 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 327 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>ACSA_MOUSE (Q9QXG4) Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1)| (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA synthetase short-chain family member 2) Length = 701 Score = 29.6 bits (65), Expect = 6.5 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -2 Query: 321 CRRSQGELPHLPAQRDGPDEAADGVDSELDVLDGVARHDALVEVAVEGHPLHVVVGAHLH 142 CRR Q + + D + + S +V + H+A+ E AV GHP H V G L+ Sbjct: 554 CRRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHP-HPVKGECLY 612
>ZN592_HUMAN (Q92610) Zinc finger protein 592| Length = 1267 Score = 29.3 bits (64), Expect = 8.5 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = +3 Query: 216 QPHRGHQARCQHHRQPRQGHRAAPGDGEAHLVIADTPETSLTSCLGCS 359 +P GH + H ++P G APG V + SL C CS Sbjct: 1083 KPPGGHSPQVNHLKRPVSGVGDAPGTSNGATVSSTKRHKSLFQCAKCS 1130
>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 29.3 bits (64), Expect = 8.5 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -2 Query: 417 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRDGPDEA 259 LKSVR+A L + S +P R+S V QG +P A R G DEA Sbjct: 17 LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>HEMA_IABUD (P19694) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 564 Score = 29.3 bits (64), Expect = 8.5 Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Frame = -2 Query: 579 FFFTFIHISNIGVLQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRS 400 F++T + ++ V + H++ + +T +TP+P + S Sbjct: 245 FYWTIVEPGDLIVFNTIGNLIAPRGHYKLNN----QKKSTILNTPIP----------IGS 290 Query: 399 AADLCYTDRSAAASSNPSRMSGTFPV--CRR--SQGELPHLPAQRDGPDEAADGV 247 C+TD+ + +++NP + + C + QG L R+ P++A+ G+ Sbjct: 291 CVSKCHTDKGSVSTTNPFQNISRIAIGECPKYVKQGSLKLATGMRNVPEKASRGL 345
>ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 293 Score = 29.3 bits (64), Expect = 8.5 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 279 AAPGDGEAHLVIADTPETSLTSCLGCSKL 365 A PGDG AH + ADT L + L KL Sbjct: 177 ATPGDGRAHNINADTVAGELAAALEAEKL 205 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,672,420 Number of Sequences: 219361 Number of extensions: 1702492 Number of successful extensions: 6612 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 6202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6603 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
