ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4l18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
2dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
3dbj|AK111986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 3e-38
4ref|NM_187359.1| Oryza sativa (japonica cultivar-group), mRNA 155 1e-34
5gb|AY103845.1| Zea mays PCO078224 mRNA sequence 98 2e-17
6gb|AY553366.1| Elaeis oleifera small-protein-like mRNA, partial ... 62 1e-06
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
8gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 54 3e-04
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
10emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j2... 52 0.001
11gb|BT013317.1| Lycopersicon esculentum clone 135002R, mRNA sequence 48 0.019
12gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, com... 42 1.2
13ref|NM_026666.1| Mus musculus ubinuclein 1 (Ubn1), mRNA 42 1.2
14gb|BC060723.1| Mus musculus ubinuclein 1, mRNA (cDNA clone IMAGE... 42 1.2
15gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome... 42 1.2
16gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosom... 42 1.2
17gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosom... 42 1.2
18gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, com... 42 1.2
19gb|BC098372.1| Mus musculus ubinuclein 1, mRNA (cDNA clone MGC:1... 42 1.2
20emb|Z99765.1|FPZ99765 Flaveria pringlei gdcsH gene 42 1.2
21dbj|AK147571.1| Mus musculus 14 days pregnant adult female place... 42 1.2
22dbj|AK084046.1| Mus musculus 12 days embryo spinal ganglion cDNA... 42 1.2
23gb|AC131718.5| Mus musculus BAC clone RP23-171B16 from 6, comple... 42 1.2
24gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple... 42 1.2
25emb|AL356430.19| Human DNA sequence from clone RP11-467B13 on ch... 40 4.6
26gb|AC162464.7| Mus musculus 6 BAC RP24-131E12 (Roswell Park Canc... 40 4.6
27emb|BX649301.3| Zebrafish DNA sequence from clone DKEY-208D13 in... 40 4.6
28gb|AC021491.16| Homo sapiens chromosome 17, clone RP11-94C24, co... 40 4.6
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
30dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
31gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaC... 40 4.6
32gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.11... 40 4.6
33gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Re... 40 4.6
34gb|AC171638.2| Rhesus Macaque BAC CH250-504D18 (Children's Hosp... 40 4.6 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  167 bits (84), Expect = 3e-38
 Identities = 121/134 (90%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgcactgcctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaa 60
                |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 18525835 tgcacttcctggaatggagaccctctcatcagcaaagcaggaagacatggttgatgtgaa 18525776

                                                                            
Query: 61       cttaaagtccagcaatgctaactcatctcagtcgcaggcacaggccgggggatgcagtng 120
                ||| ||||| ||||| || |||||||| ||||| ||||||||||| |||||||||||| |
Sbjct: 18525775 cttgaagtcaagcaacgccaactcatcccagtctcaggcacaggctgggggatgcagttg 18525716

                              
Query: 121      ntagctccagtccc 134
                 ||||| |||||||
Sbjct: 18525715 ttagcttcagtccc 18525702



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 59/63 (93%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                            
Query: 251      attttgtcagnggcctaa-gctagcaacagtgtatagttgggttggcactgtgaactcct 309
                ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18525517 attttctcagtggcctaaagctagcaacagtgtatagttgggttggcactgtgaacttct 18525458

                   
Query: 310      atc 312
                |||
Sbjct: 18525457 atc 18525455
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score =  167 bits (84), Expect = 3e-38
 Identities = 121/134 (90%)
 Strand = Plus / Minus

                                                                         
Query: 1     tgcactgcctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaa 60
             |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 54591 tgcacttcctggaatggagaccctctcatcagcaaagcaggaagacatggttgatgtgaa 54532

                                                                         
Query: 61    cttaaagtccagcaatgctaactcatctcagtcgcaggcacaggccgggggatgcagtng 120
             ||| ||||| ||||| || |||||||| ||||| ||||||||||| |||||||||||| |
Sbjct: 54531 cttgaagtcaagcaacgccaactcatcccagtctcaggcacaggctgggggatgcagttg 54472

                           
Query: 121   ntagctccagtccc 134
              ||||| |||||||
Sbjct: 54471 ttagcttcagtccc 54458



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 59/63 (93%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                         
Query: 251   attttgtcagnggcctaa-gctagcaacagtgtatagttgggttggcactgtgaactcct 309
             ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 54273 attttctcagtggcctaaagctagcaacagtgtatagttgggttggcactgtgaacttct 54214

                
Query: 310   atc 312
             |||
Sbjct: 54213 atc 54211
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>dbj|AK111986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G04, full
           insert sequence
          Length = 1249

 Score =  167 bits (84), Expect = 3e-38
 Identities = 121/134 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcactgcctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaa 60
           |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 730 tgcacttcctggaatggagaccctctcatcagcaaagcaggaagacatggttgatgtgaa 789

                                                                       
Query: 61  cttaaagtccagcaatgctaactcatctcagtcgcaggcacaggccgggggatgcagtng 120
           ||| ||||| ||||| || |||||||| ||||| ||||||||||| |||||||||||| |
Sbjct: 790 cttgaagtcaagcaacgccaactcatcccagtctcaggcacaggctgggggatgcagttg 849

                         
Query: 121 ntagctccagtccc 134
            ||||| |||||||
Sbjct: 850 ttagcttcagtccc 863



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 59/63 (93%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                        
Query: 251  attttgtcagnggcctaa-gctagcaacagtgtatagttgggttggcactgtgaactcct 309
            ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1048 attttctcagtggcctaaagctagcaacagtgtatagttgggttggcactgtgaacttct 1107

               
Query: 310  atc 312
            |||
Sbjct: 1108 atc 1110
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>ref|NM_187359.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 627

 Score =  155 bits (78), Expect = 1e-34
 Identities = 108/118 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcactgcctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaa 60
           |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 504 tgcacttcctggaatggagaccctctcatcagcaaagcaggaagacatggttgatgtgaa 563

                                                                     
Query: 61  cttaaagtccagcaatgctaactcatctcagtcgcaggcacaggccgggggatgcagt 118
           ||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 564 cttgaagtcaagcaacgccaactcatcccagtctcaggcacaggctgggggatgcagt 621
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>gb|AY103845.1| Zea mays PCO078224 mRNA sequence
          Length = 1136

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 122/147 (82%)
 Strand = Plus / Plus

                                                                       
Query: 8   cctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaacttaaag 67
           ||||| |||||||| || || ||||| || |||||||||||||||||||||||||| | |
Sbjct: 625 cctggtatggagacactctcatcagcgaaacaggaagacatggttgatgtgaacttgagg 684

                                                                       
Query: 68  tccagcaatgctaactcatctcagtcgcaggcacaggccgggggatgcagtngntagctc 127
           ||  ||||||| ||||| || ||||| ||||| ||||| |||||||||||| | ||| | 
Sbjct: 685 tctggcaatgcaaactcgtcccagtctcaggctcaggctgggggatgcagttgttagttg 744

                                      
Query: 128 cagtccctaacagtggcagctcatgat 154
           ||||| || ||| | || |||||||||
Sbjct: 745 cagtctctgacacttgctgctcatgat 771



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 258 cagnggcctaagctagcaacagtgtatagttgggttggcactg 300
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 925 cagtggcctaagctagcaacagtgtatagttgggttggcactg 967
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>gb|AY553366.1| Elaeis oleifera small-protein-like mRNA, partial sequence
          Length = 474

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcactgcctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaa 60
           ||||||||| || |||||||| || |||||  | |||||||||||||||||| |||||||
Sbjct: 410 tgcactgccagggatggagactctctcgtctacgaagcaggaagacatggtttatgtgaa 469

              
Query: 61  ctt 63
           |||
Sbjct: 470 ctt 472
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 5       ctgcctggaatggagaccctttcgtcagcaaagcaggaagacatggt 51
               ||||||||||||||| | || || || ||||||||||||||||||||
Sbjct: 4747717 ctgcctggaatggaggcgctctcatcggcaaagcaggaagacatggt 4747763
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 5     ctgcctggaatggagaccctttcgtcagcaaagcaggaagacatggt 51
             ||||||||||||||| | || || || ||||||||||||||||||||
Sbjct: 87738 ctgcctggaatggaggcgctctcatcggcaaagcaggaagacatggt 87692
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 5       ctgcctggaatggagaccctttcgtcagcaaagcaggaagacatggt 51
               ||||||||||||||| | || || || ||||||||||||||||||||
Sbjct: 4747832 ctgcctggaatggaggcgctctcatcggcaaagcaggaagacatggt 4747878
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>emb|CR931737.1| Medicago truncatula chromosome 5 clone mth2-65j24, COMPLETE SEQUENCE
          Length = 126498

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                          
Query: 8      cctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaacttaaag 67
              ||||||||||| || || || || ||||| || |||||| |||||||||| |||||||||
Sbjct: 102795 cctggaatggaaacactatcttctgcaaaacaagaagacttggttgatgtaaacttaaag 102854

                
Query: 68     tc 69
              ||
Sbjct: 102855 tc 102856
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>gb|BT013317.1| Lycopersicon esculentum clone 135002R, mRNA sequence
          Length = 1182

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 6   tgcctggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgt 57
           |||| ||||||||||| || || || || ||||| |||||||||||||||||
Sbjct: 707 tgccaggaatggagacactatcttcggctaagcaagaagacatggttgatgt 758
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>gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, complete sequence
          Length = 160709

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   ttttatgtgttcttagtattt 254
             |||||||||||||||||||||
Sbjct: 84915 ttttatgtgttcttagtattt 84895
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>ref|NM_026666.1| Mus musculus ubinuclein 1 (Ubn1), mRNA
          Length = 5656

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  ttatgtgttcttagtattttg 256
            |||||||||||||||||||||
Sbjct: 3956 ttatgtgttcttagtattttg 3936
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>gb|BC060723.1| Mus musculus ubinuclein 1, mRNA (cDNA clone IMAGE:6406329), partial
            cds
          Length = 5314

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  ttatgtgttcttagtattttg 256
            |||||||||||||||||||||
Sbjct: 3634 ttatgtgttcttagtattttg 3614
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>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence
          Length = 233527

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 236    ttatgtgttcttagtattttg 256
              |||||||||||||||||||||
Sbjct: 216392 ttatgtgttcttagtattttg 216412
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>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete
             sequence
          Length = 181475

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   ttatgtgttcttagtattttg 256
             |||||||||||||||||||||
Sbjct: 86239 ttatgtgttcttagtattttg 86219
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>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete sequence
          Length = 181338

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 236    ttatgtgttcttagtattttg 256
              |||||||||||||||||||||
Sbjct: 134437 ttatgtgttcttagtattttg 134417
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>gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, complete sequence
          Length = 168622

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   ttttatgtgttcttagtattt 254
             |||||||||||||||||||||
Sbjct: 96357 ttttatgtgttcttagtattt 96377
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>gb|BC098372.1| Mus musculus ubinuclein 1, mRNA (cDNA clone MGC:102206
            IMAGE:30363389), complete cds
          Length = 5656

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  ttatgtgttcttagtattttg 256
            |||||||||||||||||||||
Sbjct: 3956 ttatgtgttcttagtattttg 3936
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>emb|Z99765.1|FPZ99765 Flaveria pringlei gdcsH gene
          Length = 3611

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 11  ggaatggagaccctttcgtcagcaaagcaggaagacatggttgatgtgaactt 63
           |||||||| || ||||| ||| |||| || |||||  ||||||||||||||||
Sbjct: 570 ggaatggaaacactttcctcaacaaaacatgaagagctggttgatgtgaactt 622
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>dbj|AK147571.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN
            full-length enriched library, clone:M5C1080L16
            product:ubinuclein 1, full insert sequence
          Length = 6456

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  ttatgtgttcttagtattttg 256
            |||||||||||||||||||||
Sbjct: 4797 ttatgtgttcttagtattttg 4777
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>dbj|AK084046.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130079H02 product:ubinuclein 1,
            full insert sequence
          Length = 3820

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 236  ttatgtgttcttagtattttg 256
            |||||||||||||||||||||
Sbjct: 2158 ttatgtgttcttagtattttg 2138
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>gb|AC131718.5| Mus musculus BAC clone RP23-171B16 from 6, complete sequence
          Length = 199299

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 86     tctcagtcgcaggcacaggcc 106
              |||||||||||||||||||||
Sbjct: 173964 tctcagtcgcaggcacaggcc 173944
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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    tctcagtcgcaggcacaggcc 106
             |||||||||||||||||||||
Sbjct: 88440 tctcagtcgcaggcacaggcc 88420
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>emb|AL356430.19| Human DNA sequence from clone RP11-467B13 on chromosome 13 Contains
            part of the NBEA gene for neurobeachin (BCL8B FLJ10197
            KIAA1544) and a pseudogene similar to part og a noveln
            proteon (KIAA1925), complete sequence
          Length = 170885

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  agcaacagtgtatagttggg 291
            ||||||||||||||||||||
Sbjct: 1550 agcaacagtgtatagttggg 1569
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>gb|AC162464.7| Mus musculus 6 BAC RP24-131E12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 175087

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    cgttttttatgtgttcttag 249
              ||||||||||||||||||||
Sbjct: 138187 cgttttttatgtgttcttag 138206
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>emb|BX649301.3| Zebrafish DNA sequence from clone DKEY-208D13 in linkage group 10,
            complete sequence
          Length = 149467

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 236  ttatgtgttcttagtatttt 255
            ||||||||||||||||||||
Sbjct: 9465 ttatgtgttcttagtatttt 9484
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>gb|AC021491.16| Homo sapiens chromosome 17, clone RP11-94C24, complete sequence
          Length = 175262

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     ttaaagtccagcaatgctaa 81
              ||||||||||||||||||||
Sbjct: 171021 ttaaagtccagcaatgctaa 171040



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     ttaaagtccagcaatgctaa 81
              ||||||||||||||||||||
Sbjct: 169831 ttaaagtccagcaatgctaa 169850
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 139      agtggcagctcatgatatca 158
                ||||||||||||||||||||
Sbjct: 16509948 agtggcagctcatgatatca 16509929
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>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   agtggcagctcatgatatca 158
             ||||||||||||||||||||
Sbjct: 30618 agtggcagctcatgatatca 30599
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>gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-10 noaCRR1
            retrotransposon, partial sequence
          Length = 4140

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  agtggcagctcatgatatca 158
            ||||||||||||||||||||
Sbjct: 2138 agtggcagctcatgatatca 2119
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>gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence
          Length = 123585

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ttaaagtccagcaatgctaa 81
            ||||||||||||||||||||
Sbjct: 3196 ttaaagtccagcaatgctaa 3215



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   ttaaagtccagcaatgctaa 81
            ||||||||||||||||||||
Sbjct: 2006 ttaaagtccagcaatgctaa 2025
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>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC
             RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid
             U35B5 (from Lawrence Livermore), complete sequence
          Length = 259202

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tgaacttaaagtccagcaat 76
             ||||||||||||||||||||
Sbjct: 93327 tgaacttaaagtccagcaat 93308
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>gb|AC171638.2| Rhesus Macaque  BAC CH250-504D18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 160646

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gttttttatgtgttcttagt 250
             ||||||||||||||||||||
Sbjct: 65027 gttttttatgtgttcttagt 65046


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,385,377
Number of Sequences: 3902068
Number of extensions: 2385377
Number of successful extensions: 39184
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39106
Number of HSP's gapped (non-prelim): 78
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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