ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4l16 |
|---|---|
| Clone Library Name | barley_pub |
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 92.8 bits (229), Expect = 7e-19 Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 4/202 (1%) Frame = +1 Query: 7 TRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRR 186 +R N + P ++K CY+CG GHLS CP+ K A R Sbjct: 82 SRDCPNSAKPGAAKGFE-CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDR 140 Query: 187 TCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKY----APYMASEQNKIDDGSTSAPS 354 TCY+CG GH+S CPN ++ D Y A +++ + G + A Sbjct: 141 TCYKCGDAGHISRDCPNGQG-----GYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGD 195 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 RKCY+CG SGH+S CP+ +T G +P +S E +G S + Sbjct: 196 --RKCYKCGESGHMSRECPSAGSTGSGDRACYKCG----KPGHISRECPEAGG-SYGGSR 248 Query: 535 KKKRRTCYECGIAGHLSSECPN 600 RTCY+CG AGH+S +CP+ Sbjct: 249 GGGDRTCYKCGEAGHISRDCPS 270 Score = 82.0 bits (201), Expect = 1e-15 Identities = 51/185 (27%), Positives = 71/185 (38%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 ++ TC+ CG GH+S CPN+ A + + TC+ CG GH+S Sbjct: 40 ERSTTCFRCGEEGHMSRECPNE----------------ARSGAAGAMTCFRCGEAGHMSR 83 Query: 226 ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSA 405 CPN + P +K +CY+CG GHLS Sbjct: 84 DCPNSAKP--------------------------------GAAKGFECYKCGQEGHLSRD 111 Query: 406 CPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLS 585 CP+ + GG + + SGD RTCY+CG AGH+S Sbjct: 112 CPSS--------QGGSRGGYGQKRGRSGAQGGYSGD-----------RTCYKCGDAGHIS 152 Query: 586 SECPN 600 +CPN Sbjct: 153 RDCPN 157
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 59.3 bits (142), Expect = 8e-09 Identities = 46/184 (25%), Positives = 64/184 (34%), Gaps = 1/184 (0%) Frame = +1 Query: 52 RRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 ++ CY CG GHL+ C ++ R CY C PGH+ + C Sbjct: 3 QKACYVCGKIGHLAEDCDSE------------------------RLCYNCNKPGHVQTDC 38 Query: 232 PNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACP 411 T P Y E + T ++C+ C +GH+S CP Sbjct: 39 ------------TMPRTVEFKQCYNCGETGHVRSECTV-----QRCFNCNQTGHISRECP 81 Query: 412 N-KKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSS 588 KK + S GG + E+ SG CY CG AGH+S Sbjct: 82 EPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG------------LKCYTCGQAGHMSR 129 Query: 589 ECPN 600 +C N Sbjct: 130 DCQN 133 Score = 57.0 bits (136), Expect = 4e-08 Identities = 43/181 (23%), Positives = 60/181 (33%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 R CY C PGH+ + C E N T + +R C+ C GH+S CP Sbjct: 23 RLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISRECP 81 Query: 235 NKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPN 414 P+ S ++ P ++ +DG + KCY CG +GH+S C N Sbjct: 82 E---PKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGL-----KCYTCGQAGHMSRDCQN 133 Query: 415 KKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 R CY C GH+S +C Sbjct: 134 D-------------------------------------------RLCYNCNETGHISKDC 150 Query: 595 P 597 P Sbjct: 151 P 151 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/66 (27%), Positives = 28/66 (42%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGH 216 TS + +CY+CG P H++ C + + + + R CY C GH Sbjct: 86 TSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGH 145 Query: 217 LSSACP 234 +S CP Sbjct: 146 ISKDCP 151
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 58.2 bits (139), Expect = 2e-08 Identities = 44/186 (23%), Positives = 58/186 (31%), Gaps = 1/186 (0%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 ++ C+ C PGH S+ CP ++ R CY C PGH S Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKK------------------EREPRVCYNCQQPGHNSR 409 Query: 226 ACPNKSAP-EVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSS 402 CP + P E + T F + + P KC+ C GH S+ Sbjct: 410 DCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP---MKCFNCKGEGHRSA 466 Query: 403 ACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHL 582 CP PP R C+ CG GH Sbjct: 467 ECPE-------------------------------------PP-----RGCFNCGEQGHR 484 Query: 583 SSECPN 600 S+ECPN Sbjct: 485 SNECPN 490 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 34/113 (30%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVD------------------- 135 ++N+ P ++ R CY C PGH S CP + P + Sbjct: 382 RSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNA 441 Query: 136 ENKANTES---------------ATTASKKRRTCYECGIPGHLSSACPNKSAP 249 E N E + + R C+ CG GH S+ CPN + P Sbjct: 442 EGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKP 494 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/88 (21%), Positives = 26/88 (29%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGD 513 G + C+ C GH S+ CP Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPE--------------------------------- 274 Query: 514 TSSAPPKKKKRRTCYECGIAGHLSSECP 597 P K+++ R CY C GH S +CP Sbjct: 275 ----PKKEREPRVCYNCQQPGHNSRDCP 298
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 56.6 bits (135), Expect = 5e-08 Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 3/192 (1%) Frame = +1 Query: 28 SVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTE-SATTASKKRRTCYECG 204 +VP +++ CY CG GH + C S + + N+ + S T ++ +TCY CG Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQEKTCYACG 64 Query: 205 IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 GHL CP S+ P + +CY+CG Sbjct: 65 TAGHLVRDCP----------------------------------SSPNPRQGAECYKCGR 90 Query: 385 SGHLSSACPNKKATVISPEEAKPVGG--SSMEPSAVSVENKPSGDTSSAPPKKKKRRTCY 558 GH++ C + GG S+M A + D + CY Sbjct: 91 VGHIARDCRTN-----GQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-------KCY 138 Query: 559 ECGIAGHLSSEC 594 CG GH S EC Sbjct: 139 SCGKIGHRSFEC 150 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = +1 Query: 340 TSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTS 519 T+ P R CY CG +GH + C ++ +G + Sbjct: 12 TTRPGPR--CYNCGENGHQARECTK---------------------GSICYNCNQTGHKA 48 Query: 520 SAPPKKKKRRTCYECGIAGHLSSECPN 600 S + ++ +TCY CG AGHL +CP+ Sbjct: 49 SECTEPQQEKTCYACGTAGHLVRDCPS 75 Score = 38.9 bits (89), Expect = 0.011 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 15/139 (10%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEV------------IVDENKANTESATT---A 171 T ++ +TCY CG GHL CP+ P I + + N + + Sbjct: 52 TEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGG 111 Query: 172 SKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAP 351 + CY CG GH + C + + + K + + E + DG Sbjct: 112 HRSNMNCYACGSYGHQARDC---------TMGVKCYSCGKIG-HRSFECQQASDGQL--- 158 Query: 352 SKRRKCYECGISGHLSSAC 408 CY+C GH++ C Sbjct: 159 -----CYKCNQPGHIAVNC 172 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/57 (28%), Positives = 21/57 (36%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 CY CG GH S C S ++ CY+C PGH++ C Sbjct: 137 CYSCGKIGHRSFECQQASDGQL---------------------CYKCNQPGHIAVNC 172
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 55.5 bits (132), Expect = 1e-07 Identities = 45/187 (24%), Positives = 56/187 (29%), Gaps = 2/187 (1%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 ++ C+ C PGH SS CP ++ R CY C PGH S Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRK------------------EREPRVCYNCQQPGHTSR 196 Query: 226 ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKR--RKCYECGISGHLS 399 C + P T F DG +R KC+ C GH S Sbjct: 197 ECTEERKPR--EGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRS 254 Query: 400 SACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGH 579 + CP PP R C+ CG GH Sbjct: 255 AECPE-------------------------------------PP-----RGCFNCGEQGH 272 Query: 580 LSSECPN 600 S+ECPN Sbjct: 273 RSNECPN 279 Score = 36.2 bits (82), Expect = 0.074 Identities = 23/108 (21%), Positives = 32/108 (29%), Gaps = 36/108 (33%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGHLSSACPNKSAPE------------------------------ 123 P ++ R CY C PGH S C + P Sbjct: 176 PRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGG 235 Query: 124 ------VIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAP 249 + K + + R C+ CG GH S+ CPN + P Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKP 283
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 54.3 bits (129), Expect = 3e-07 Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 2/187 (1%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 SS CY CG GHL+ C + E+KA CY CG GH+ Sbjct: 41 SSSLPDICYRCGESGHLAKDCD--------LQEDKA--------------CYNCGRGGHI 78 Query: 220 SSAC--PNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGH 393 + C P + + N +P ++A + + D+ +KCY CG GH Sbjct: 79 AKDCKEPKREREQCCYNCGKP-------GHLARDCDHADE---------QKCYSCGEFGH 122 Query: 394 LSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIA 573 + C T + G ++ S S N CY CG + Sbjct: 123 IQKDC-----TKVKCYRCGETGHVAINCSKTSEVN------------------CYRCGES 159 Query: 574 GHLSSEC 594 GHL+ EC Sbjct: 160 GHLAREC 166 Score = 33.5 bits (75), Expect = 0.48 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP-KKK 540 +C++CG +GH + CP G M S + + A + Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQ 64 Query: 541 KRRTCYECGIAGHLSSEC 594 + + CY CG GH++ +C Sbjct: 65 EDKACYNCGRGGHIAKDC 82
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 53.1 bits (126), Expect = 6e-07 Identities = 47/188 (25%), Positives = 60/188 (31%), Gaps = 3/188 (1%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKR---RTCYECGIP 210 SS CY CG GHL+ C + E + + + KR + CY CG P Sbjct: 47 SSSLPDICYRCGESGHLAKDC-DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKP 105 Query: 211 GHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISG 390 GHL+ C + DE K Y E I T KCY CG +G Sbjct: 106 GHLARDCDHA-------------DEQKC--YSCGEFGHIQKDCTKV-----KCYRCGETG 145 Query: 391 HLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGI 570 H++ C K CY CG Sbjct: 146 HVAINC-----------------------------------------SKTSEVNCYRCGE 164 Query: 571 AGHLSSEC 594 +GHL+ EC Sbjct: 165 SGHLAREC 172
>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING| finger protein 2) Length = 344 Score = 52.4 bits (124), Expect = 1e-06 Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 4/171 (2%) Frame = +1 Query: 1 FGTRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK 180 FG + D++ ++ K C C GHL CP+ +I A + + K Sbjct: 46 FGVSDDDKDAIKEAAPK---CNNCSQRGHLKKDCPH-----IICSYCGATDDHYSRHCPK 97 Query: 181 RRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPS-- 354 C +C GH S CP+K + + P + +DD + P Sbjct: 98 AIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL 157 Query: 355 --KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENK 501 CY CG GH C K+++ + E+ GS+ S +SVE K Sbjct: 158 PFHTIYCYNCGGKGHFGDDCKEKRSSRVPNED-----GSAFTGSNLSVELK 203 Score = 38.5 bits (88), Expect = 0.015 Identities = 34/141 (24%), Positives = 49/141 (34%), Gaps = 6/141 (4%) Frame = +1 Query: 190 CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 369 C C GHL CP+ + S DD + K +C Sbjct: 63 CNNCSQRGHLKKDCPH---------------------IICSYCGATDDHYSRHCPKAIQC 101 Query: 370 YECGISGHLSSACPNK----KATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 537 +C GH S CP+K + T+ ++ S+ + + V+ D A PK Sbjct: 102 SKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIWRAYILVD-----DNEKAKPKV 156 Query: 538 KKRRT--CYECGIAGHLSSEC 594 T CY CG GH +C Sbjct: 157 LPFHTIYCYNCGGKGHFGDDC 177
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 45/186 (24%), Positives = 58/186 (31%), Gaps = 1/186 (0%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKR-RTCYECGIPGH 216 SS CY CG GHL+ C + + ++R + CY CG PGH Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106 Query: 217 LSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHL 396 L+ C + DE K Y E I T KCY CG +GH+ Sbjct: 107 LARDCDHA-------------DEQKC--YSCGEFGHIQKDCTKV-----KCYRCGETGHV 146 Query: 397 SSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAG 576 + C K CY CG +G Sbjct: 147 AINC-----------------------------------------SKTSEVNCYRCGESG 165 Query: 577 HLSSEC 594 HL+ EC Sbjct: 166 HLAREC 171
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 45/186 (24%), Positives = 58/186 (31%), Gaps = 1/186 (0%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKR-RTCYECGIPGH 216 SS CY CG GHL+ C + + ++R + CY CG PGH Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106 Query: 217 LSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHL 396 L+ C + DE K Y E I T KCY CG +GH+ Sbjct: 107 LARDCDHA-------------DEQKC--YSCGEFGHIQKDCTKV-----KCYRCGETGHV 146 Query: 397 SSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAG 576 + C K CY CG +G Sbjct: 147 AINC-----------------------------------------SKTSEVNCYRCGESG 165 Query: 577 HLSSEC 594 HL+ EC Sbjct: 166 HLAREC 171
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 52.0 bits (123), Expect = 1e-06 Identities = 45/186 (24%), Positives = 58/186 (31%), Gaps = 1/186 (0%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKR-RTCYECGIPGH 216 SS CY CG GHL+ C + + ++R + CY CG PGH Sbjct: 47 SSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106 Query: 217 LSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHL 396 L+ C + DE K Y E I T KCY CG +GH+ Sbjct: 107 LARDCDHA-------------DEQKC--YSCGEFGHIQKDCTKV-----KCYRCGETGHV 146 Query: 397 SSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAG 576 + C K CY CG +G Sbjct: 147 AINC-----------------------------------------SKTSEVNCYRCGESG 165 Query: 577 HLSSEC 594 HL+ EC Sbjct: 166 HLAREC 171
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 44.3 bits (103), Expect = 3e-04 Identities = 45/193 (23%), Positives = 57/193 (29%), Gaps = 7/193 (3%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 S+ K C C GHLS CP +K R C+ C GHL Sbjct: 235 SANKNIICRNCDKRGHLSKNCP---------------------LPRKVRRCFLCSRRGHL 273 Query: 220 SSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLS 399 +CP P E P M +D S ++C C + GH + Sbjct: 274 LYSCP------------APLCEYCPVPKM------LDHSCLFRHSWDKQCDRCHMLGHYT 315 Query: 400 SACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRT-------CY 558 AC + + T PPKK K + CY Sbjct: 316 DAC-------------------------TEIWRQYHLTTKPGPPKKPKTPSRPSALAYCY 350 Query: 559 ECGIAGHLSSECP 597 C GH ECP Sbjct: 351 HCAQKGHYGHECP 363 Score = 42.7 bits (99), Expect = 8e-04 Identities = 33/131 (25%), Positives = 45/131 (34%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K R C+ C GHL +CP V K S + C C + GH + Sbjct: 259 RKVRRCFLCSRRGHLLYSCPAPLCEYCPVP--KMLDHSCLFRHSWDKQCDRCHMLGHYTD 316 Query: 226 ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSA 405 AC ++ P +PK + S PS CY C GH Sbjct: 317 ACTEIWRQYHLTTKPGPPKKPK---------------TPSRPSALAYCYHCAQKGHYGHE 361 Query: 406 CPNKKATVISP 438 CP ++ SP Sbjct: 362 CPEREVYDPSP 372
>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 K +TCY CG PGHLSS C AP+V C++C PGH S Sbjct: 378 KAAQTCYNCGKPGHLSSQC---RAPKV---------------------CFKCKQPGHFSK 413 Query: 226 ACPNKSAPE 252 C +S P+ Sbjct: 414 QC--RSVPK 420 Score = 32.7 bits (73), Expect = 0.82 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +1 Query: 538 KKRRTCYECGIAGHLSSEC 594 K +TCY CG GHLSS+C Sbjct: 378 KAAQTCYNCGKPGHLSSQC 396
>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 K +TCY CG PGHLSS C AP+V C++C PGH S Sbjct: 378 KAAQTCYNCGKPGHLSSQC---RAPKV---------------------CFKCKQPGHFSK 413 Query: 226 ACPNKSAPE 252 C +S P+ Sbjct: 414 QC--RSVPK 420 Score = 32.7 bits (73), Expect = 0.82 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +1 Query: 538 KKRRTCYECGIAGHLSSEC 594 K +TCY CG GHLSS+C Sbjct: 378 KAAQTCYNCGKPGHLSSQC 396
>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/69 (36%), Positives = 31/69 (44%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 K +TCY CG PGHLSS C AP+V C++C PGH S Sbjct: 378 KAAQTCYNCGKPGHLSSQC---RAPKV---------------------CFKCKQPGHFSK 413 Query: 226 ACPNKSAPE 252 C +S P+ Sbjct: 414 QC--RSVPK 420 Score = 32.7 bits (73), Expect = 0.82 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +1 Query: 538 KKRRTCYECGIAGHLSSEC 594 K +TCY CG GHLSS+C Sbjct: 378 KAAQTCYNCGKPGHLSSQC 396
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 42.0 bits (97), Expect = 0.001 Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 3/142 (2%) Frame = +1 Query: 1 FGTRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASK- 177 FG N ++ R C+ CG GH+S C P + A+ + Sbjct: 552 FGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQP 611 Query: 178 --KRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAP 351 R C CGI GH + C P + E +A +E+ +++ Sbjct: 612 RVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCG--QEGHFAKDCQNERVRME------- 662 Query: 352 SKRRKCYECGISGHLSSACPNK 417 C C GH CP + Sbjct: 663 -PTEPCRRCAEEGHWGYECPTR 683 Score = 38.1 bits (87), Expect = 0.020 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 7/96 (7%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGD 513 G+ + R C+ CG GH+S C K + +G + + V P + Sbjct: 561 GNWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRN 620 Query: 514 TS-------SAPPKKKKRRTCYECGIAGHLSSECPN 600 K R C CG GH + +C N Sbjct: 621 CGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQN 656
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/128 (21%), Positives = 51/128 (39%) Frame = +1 Query: 1 FGTRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK 180 F ++ + D+ P++S + + P S N S P V+ + S Sbjct: 39 FQKKQPDEDTAPSTSSSQSDLF----PSETDSDNGNTSIPTPTVNPTQQLPTELNVDSPS 94 Query: 181 RRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKR 360 + C C H+S P+K + + S ++ P P + ++ D+ S S R Sbjct: 95 KEDCGPCTDSAHVSLTTPSKRSCDSDSQ-SEDDTSPMKRPRLLDSGDRPDNSSRSKQKSR 153 Query: 361 RKCYECGI 384 R+C+ C I Sbjct: 154 RRCFRCQI 161 Score = 32.3 bits (72), Expect = 1.1 Identities = 47/197 (23%), Positives = 73/197 (37%), Gaps = 8/197 (4%) Frame = +1 Query: 4 GTRKANNDSVPT--------SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTES 159 G+ ++N S+P SSK C +C A K P DE+ A + S Sbjct: 5 GSERSNAPSLPPRCPCGFWGSSKTMNLCSKC-------FADFQKKQP----DEDTAPSTS 53 Query: 160 ATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGS 339 ++ + P S N S P N TQ + +E N Sbjct: 54 SSQSDL---------FPSETDSDNGNTSIPTPTVNPTQQ---------LPTELN------ 89 Query: 340 TSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTS 519 +PSK C C S H+S P+K++ S +++ P + ++P + Sbjct: 90 VDSPSKE-DCGPCTDSAHVSLTTPSKRSCD-SDSQSEDDTSPMKRPRLLDSGDRPDNSSR 147 Query: 520 SAPPKKKKRRTCYECGI 570 S K+K RR C+ C I Sbjct: 148 S---KQKSRRRCFRCQI 161
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 41.2 bits (95), Expect = 0.002 Identities = 30/137 (21%), Positives = 45/137 (32%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GH++ C + ++R+ CY CG GHL+ C + Sbjct: 67 CYNCGRSGHIAKDCKDPKR-------------------ERRQHCYTCGRLGHLARDCDRQ 107 Query: 241 SAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK 420 + S K+ G + KCY CG GH++ C + Sbjct: 108 KEQKCYS------------------CGKL--GHIQKDCAQVKCYRCGEIGHVAINCSKAR 147 Query: 421 ATVISPEEAKPVGGSSM 471 + P P M Sbjct: 148 PGQLLPLRQIPTSSQGM 164 Score = 36.6 bits (83), Expect = 0.057 Identities = 19/76 (25%), Positives = 28/76 (36%) Frame = +1 Query: 367 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 546 CY CG SGH++ C + PK+++R Sbjct: 67 CYNCGRSGHIAKDCKD--------------------------------------PKRERR 88 Query: 547 RTCYECGIAGHLSSEC 594 + CY CG GHL+ +C Sbjct: 89 QHCYTCGRLGHLARDC 104 Score = 35.4 bits (80), Expect = 0.13 Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 8/127 (6%) Frame = +1 Query: 64 YECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGH-------LS 222 + CG GH + CP A + ++ +T TCY CG G L Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLS--YTCYCCGESGRNAKNCVLLG 64 Query: 223 SACPN-KSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLS 399 + C N + + + P E + Y + K +KCY CG GH+ Sbjct: 65 NICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHL--ARDCDRQKEQKCYSCGKLGHIQ 122 Query: 400 SACPNKK 420 C K Sbjct: 123 KDCAQVK 129
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 41.2 bits (95), Expect = 0.002 Identities = 41/172 (23%), Positives = 61/172 (35%), Gaps = 6/172 (3%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRT--CY 195 PT + C G PG ++ A AP I A+++RRT C+ Sbjct: 342 PTLEEMLTACQGIGGPGQKARLMAEALKEALAPAPI----------PFAAAQQRRTIKCW 391 Query: 196 ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYE 375 CG GH + C AP +R+ C++ Sbjct: 392 NCGKDGHSARQC-------------------------------------RAP-RRQGCWK 413 Query: 376 CGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 CG SGH+ + CP ++A + +G +P V P G T +APP Sbjct: 414 CGKSGHVMANCPERQAGFLG------IGPWGKKPRNFPVTRVPQGLTPTAPP 459
>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 40.0 bits (92), Expect = 0.005 Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 6/172 (3%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRT--CY 195 PT + C G PG ++ A AP I A+++RRT C+ Sbjct: 342 PTLEEMLTACQGVGGPGQKARLMAEALKEAMAPAPI----------PFAAAQQRRTIKCW 391 Query: 196 ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYE 375 CG GH + C AP +R+ C++ Sbjct: 392 NCGKEGHSARQC-------------------------------------RAP-RRQGCWK 413 Query: 376 CGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 CG +GH+ + CP ++A + +G +P V P G T +APP Sbjct: 414 CGKAGHIMAKCPERQAGFLG------LGPWGKKPRNFPVAQIPQGLTPTAPP 459 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECP 597 +R+ C++CG AGH+ ++CP Sbjct: 407 RRQGCWKCGKAGHIMAKCP 425
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 +R+ C++CG +GH+ S CP ++A + +G +P + P G T SAPP Sbjct: 406 RRQGCWKCGKTGHIMSKCPERQAGFLG------LGPWGKKPRNFPMTQVPQGVTPSAPP 458 Score = 37.0 bits (84), Expect = 0.044 Identities = 17/63 (26%), Positives = 26/63 (41%) Frame = +1 Query: 58 TCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPN 237 TC+ CG GH + C + +R+ C++CG GH+ S CP Sbjct: 388 TCWNCGKQGHTARQC----------------------RAPRRQGCWKCGKTGHIMSKCPE 425 Query: 238 KSA 246 + A Sbjct: 426 RQA 428 Score = 31.6 bits (70), Expect = 1.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSA 117 +R+ C++CG GH+ S CP + A Sbjct: 406 RRQGCWKCGKTGHIMSKCPERQA 428 Score = 30.0 bits (66), Expect = 5.3 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECP 597 +R+ C++CG GH+ S+CP Sbjct: 406 RRQGCWKCGKTGHIMSKCP 424
>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11| Length = 1644 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Frame = +1 Query: 361 RKCYECGISGHLSSACPNKKATVI----SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAP 528 R C CG GH CP +K+ + E + G + S ++ + DT Sbjct: 1293 RCCRVCGKIGHYMKDCPKRKSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRDFR 1352 Query: 529 PKKKKRRTCYECGIAGHLSSECP 597 + R C+ CG AGH+ ECP Sbjct: 1353 DPRDLR--CFICGDAGHVRRECP 1373 Score = 37.4 bits (85), Expect = 0.033 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 17/132 (12%) Frame = +1 Query: 184 RTCYECGIPGHLSSACPNKSA-----PEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSA 348 R C CG GH CP + + + S + +E + + + D Sbjct: 1293 RCCRVCGKIGHYMKDCPKRKSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRDFR 1352 Query: 349 PSKRRKCYECGISGHLSSACPNKKAT------------VISPEEAKPVGGSSMEPSAVSV 492 + +C+ CG +GH+ CP K V + A+ V GS+ + S+ Sbjct: 1353 DPRDLRCFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRNLVNAQQVAGSAQQQGDQSI 1412 Query: 493 ENKPSGDTSSAP 528 + S + S +P Sbjct: 1413 RTRQSSECSESP 1424
>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 39.3 bits (90), Expect = 0.009 Identities = 38/166 (22%), Positives = 58/166 (34%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 PT + C G PG + ++ EVI A A +K C+ CG G Sbjct: 342 PTLEEMLTACQGVGGPGQKARLMA-EALKEVI---GPAPIPFAAAQQRKAFKCWNCGKEG 397 Query: 214 HLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGH 393 H + C AP +R+ C++CG GH Sbjct: 398 HSARQC-------------------------------------RAP-RRQGCWKCGKPGH 419 Query: 394 LSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 + + CP+++A + +G +P V P G T +APP Sbjct: 420 IMTNCPDRQAGFLG------LGPWGKKPRNFPVAQVPQGLTPTAPP 459 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Frame = +1 Query: 409 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 567 P +KA +++ E K V G + P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEVIGPAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 568 IAGHLSSECPN 600 GH+ + CP+ Sbjct: 416 KPGHIMTNCPD 426
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 38.9 bits (89), Expect = 0.011 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Frame = +1 Query: 169 ASKKRRT--CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGST 342 A+++RRT C+ CG GH + C Sbjct: 381 AAQQRRTIKCWNCGKEGHSARQC------------------------------------- 403 Query: 343 SAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSS 522 AP +R+ C++CG GH+ + CP+++A + +G +P V P G T + Sbjct: 404 RAP-RRQGCWKCGKPGHIMTNCPDRQAGFLG------IGPWGKKPRNFPVAQVPQGLTPT 456 Query: 523 APP 531 APP Sbjct: 457 APP 459 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 40 SSKKRRT--CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 ++++RRT C+ CG GH + C + +R+ C++CG PG Sbjct: 381 AAQQRRTIKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKPG 418 Query: 214 HLSSACPNKSA 246 H+ + CP++ A Sbjct: 419 HIMTNCPDRQA 429
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = +1 Query: 40 SSKKRRT--CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 ++++RRT C+ CG GH + C + +R+ C++CG PG Sbjct: 381 AAQQRRTIKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKPG 418 Query: 214 HLSSACPNKSA 246 H+ + CP++ A Sbjct: 419 HIMTNCPDRQA 429 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Frame = +1 Query: 169 ASKKRRT--CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGST 342 A+++RRT C+ CG GH + C Sbjct: 381 AAQQRRTIKCWNCGKEGHSARQC------------------------------------- 403 Query: 343 SAPSKRRKCYECGISGHLSSACPNKKA 423 AP +R+ C++CG GH+ + CP+++A Sbjct: 404 RAP-RRQGCWKCGKPGHIMTNCPDRQA 429
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 38.1 bits (87), Expect = 0.020 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 7/178 (3%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRT--CY 195 PT + C G PG ++ A AP I A+++RRT C+ Sbjct: 342 PTLEEMLTACQGIGGPGQKARLMAEALKEALAPAPI----------PFAAAQQRRTIKCW 391 Query: 196 ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYE 375 CG GH + C AP +R+ C++ Sbjct: 392 NCGKDGHSARQC-------------------------------------RAP-RRQGCWK 413 Query: 376 CGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSG-DTSSAPPKKKKR 546 CG SGH+ + CP ++A + P+G E S + + P+G DT+S P + R Sbjct: 414 CGKSGHVMANCPERQAGFL---RDWPMG---KEASQLPRDPSPAGADTNSTPSRPSSR 465
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 37.7 bits (86), Expect = 0.026 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Frame = +1 Query: 1 FGTRKANNDSVPTSSKKRRTCYECGVPGHLSSACPN--KSAPEVIVDENKANTESATTAS 174 +G A S S + R CY C PGH CPN K E +N NT +A + Sbjct: 212 YGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNT-AAMVQN 270 Query: 175 KKRRTCY-----ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGS 339 + EC HLS S+H P + + Y+A + + G+ Sbjct: 271 NDNVVLFINEEEEC---MHLSGPESEWVVDTAASHHATPVRD-LFCRYVAGDFGTVKMGN 326 Query: 340 TS 345 TS Sbjct: 327 TS 328 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Frame = +1 Query: 505 SGDTSSAPPKKKKR-RTCYECGIAGHLSSECPN 600 SG + + K R R CY C GH +CPN Sbjct: 215 SGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPN 247
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 37.7 bits (86), Expect = 0.026 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 +R+ C++CG +GH+ + CP ++A + +G +P + P G T +APP+ Sbjct: 411 RRQGCWKCGKAGHVMAKCPERQAGFLG------LGPWGKKPRNFPMAQMPQGLTPTAPPE 464 Score = 33.1 bits (74), Expect = 0.63 Identities = 15/62 (24%), Positives = 25/62 (40%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C+ CG GH + C + +R+ C++CG GH+ + CP + Sbjct: 394 CWNCGKEGHSARQC----------------------RAPRRQGCWKCGKAGHVMAKCPER 431 Query: 241 SA 246 A Sbjct: 432 QA 433 Score = 30.0 bits (66), Expect = 5.3 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSA 117 +R+ C++CG GH+ + CP + A Sbjct: 411 RRQGCWKCGKAGHVMAKCPERQA 433 Score = 30.0 bits (66), Expect = 5.3 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECP 597 +R+ C++CG AGH+ ++CP Sbjct: 411 RRQGCWKCGKAGHVMAKCP 429
>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 37.7 bits (86), Expect = 0.026 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = +1 Query: 286 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 432 P P+ A++Q K+ +G ++ AP +R+ C++CG +GH+ + CP ++A + Sbjct: 375 PPPIPFAAAQQRKVIRCWNCGKEGHSARQCRAP-RRQGCWKCGKTGHVMAKCPERQAGFL 433 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 +G +P V P G +APP Sbjct: 434 G------MGPWGKKPRNFPVAQAPPGLIPTAPP 460 Score = 33.5 bits (75), Expect = 0.48 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +1 Query: 31 VPTSSKKRRT---CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYEC 201 +P ++ ++R C+ CG GH + C + +R+ C++C Sbjct: 378 IPFAAAQQRKVIRCWNCGKEGHSARQC----------------------RAPRRQGCWKC 415 Query: 202 GIPGHLSSACPNKSA 246 G GH+ + CP + A Sbjct: 416 GKTGHVMAKCPERQA 430
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 37.4 bits (85), Expect = 0.033 Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 6/179 (3%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRT--CY 195 PT + C G PG ++ A AP I A+++RRT C+ Sbjct: 342 PTLEEMLTACQGVGGPGQKARLMAEALKEAMAPAPI----------PFAAAQQRRTIKCW 391 Query: 196 ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYE 375 CG GH + C AP +R+ C++ Sbjct: 392 NCGKEGHSARQC-------------------------------------RAP-RRQGCWK 413 Query: 376 CGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRT 552 CG +GH+ + CP ++A + P+G + P N DT+S P + + T Sbjct: 414 CGKAGHIMAKCPERQAGFL---RVGPMGKEA--PQFPCGPNPAGADTNSTPDRPSRGPT 467 Score = 35.8 bits (81), Expect = 0.097 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +1 Query: 40 SSKKRRT--CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 ++++RRT C+ CG GH + C + +R+ C++CG G Sbjct: 381 AAQQRRTIKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKAG 418 Query: 214 HLSSACPNKSA 246 H+ + CP + A Sbjct: 419 HIMAKCPERQA 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECP 597 +R+ C++CG AGH+ ++CP Sbjct: 407 RRQGCWKCGKAGHIMAKCP 425
>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 37.4 bits (85), Expect = 0.033 Identities = 17/67 (25%), Positives = 29/67 (43%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K C+ CG GH + C + +R+ C++CG PGH+ + Sbjct: 385 RKAFKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKPGHIMT 422 Query: 226 ACPNKSA 246 CP++ A Sbjct: 423 NCPDRQA 429 Score = 33.9 bits (76), Expect = 0.37 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 6/170 (3%) Frame = +1 Query: 34 PTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 PT + C G PG + ++ EVI A A +K C+ CG G Sbjct: 342 PTLEEMLTACQGVGGPGQKARLMA-EALKEVI---GPAPIPFAAAQQRKAFKCWNCGKEG 397 Query: 214 HLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGH 393 H + C AP +R+ C++CG GH Sbjct: 398 HSARQC-------------------------------------RAP-RRQGCWKCGKPGH 419 Query: 394 LSSACPNKKATVISPEEAKPVGGSSME----PSAVSVE--NKPSGDTSSA 525 + + CP+++A + P+G + + PS+ + + PSG +S + Sbjct: 420 IMTNCPDRQAGFL---RTGPLGKEAPQLPRGPSSAGADTNSTPSGSSSGS 466 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Frame = +1 Query: 409 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 567 P +KA +++ E K V G + P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEVIGPAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 568 IAGHLSSECPN 600 GH+ + CP+ Sbjct: 416 KPGHIMTNCPD 426
>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 518 Score = 37.4 bits (85), Expect = 0.033 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 11/133 (8%) Frame = +1 Query: 166 TASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKI------ 327 T + TC G PG + ++ EV++ P P+ A++Q K Sbjct: 341 TLEEMLTTCQGVGGPGQKARLMA-EALKEVMA--------PAPIPFAAAQQRKTFKCWNC 391 Query: 328 -DDGST----SAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSV 492 +G + SAP +R+ C++CG SGH+ + CP+++A + +G + Sbjct: 392 GKEGHSARQWSAP-RRQGCWKCGKSGHVMANCPDRQAGFLG------IGHWGKKARNFPA 444 Query: 493 ENKPSGDTSSAPP 531 P G T +APP Sbjct: 445 AQVPQGLTPTAPP 457 Score = 31.6 bits (70), Expect = 1.8 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSA 117 S+ +R+ C++CG GH+ + CP++ A Sbjct: 402 SAPRRQGCWKCGKSGHVMANCPDRQA 427
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 37.0 bits (84), Expect = 0.044 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 + CY CG GHL +CP V+ +N N K C +CG H ++ C Sbjct: 542 KKCYNCGQIGHLKRSCP------VLNKQNIINQAITAKNKKPSGLCPKCGKGKHWANQCH 595 Query: 235 NK 240 +K Sbjct: 596 SK 597 Score = 33.5 bits (75), Expect = 0.48 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%) Frame = +1 Query: 361 RKCYECGISGHLSSACP--NKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 +KCY CG GHL +CP NK+ + AK KPSG Sbjct: 542 KKCYNCGQIGHLKRSCPVLNKQNIINQAITAK--------------NKKPSG-------- 579 Query: 535 KKKRRTCYECGIAGHLSSEC 594 C +CG H +++C Sbjct: 580 -----LCPKCGKGKHWANQC 594 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Frame = +1 Query: 184 RTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSK-R 360 + CY CG GHL +CP + ++QN I+ T+ K Sbjct: 542 KKCYNCGQIGHLKRSCP-----------------------VLNKQNIINQAITAKNKKPS 578 Query: 361 RKCYECGISGHLSSACPNK 417 C +CG H ++ C +K Sbjct: 579 GLCPKCGKGKHWANQCHSK 597
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 37.0 bits (84), Expect = 0.044 Identities = 17/63 (26%), Positives = 26/63 (41%) Frame = +1 Query: 58 TCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPN 237 TC+ CG GH + C + +R+ C++CG GH+ S CP Sbjct: 388 TCWNCGKQGHTARQC----------------------RAPRRQGCWKCGKTGHIMSKCPE 425 Query: 238 KSA 246 + A Sbjct: 426 RQA 428 Score = 33.5 bits (75), Expect = 0.48 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKA------TVISPEEAKPVGGSSMEPSAVSVENKPS--- 507 +R+ C++CG +GH+ S CP ++A T+ P S+ + ++PS Sbjct: 406 RRQGCWKCGKTGHIMSKCPERQAGFLRVRTLGKEASQLPHDPSASGSDTICTPDEPSRGH 465 Query: 508 ----GDTSSAP 528 GDT AP Sbjct: 466 DTSGGDTICAP 476 Score = 31.6 bits (70), Expect = 1.8 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSA 117 +R+ C++CG GH+ S CP + A Sbjct: 406 RRQGCWKCGKTGHIMSKCPERQA 428 Score = 30.0 bits (66), Expect = 5.3 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECP 597 +R+ C++CG GH+ S+CP Sbjct: 406 RRQGCWKCGKTGHIMSKCP 424
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 37.0 bits (84), Expect = 0.044 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 +R+ C++CG SGH+ + CP ++A + K PS+ + + + SS+ P Sbjct: 407 RRQGCWKCGKSGHIMANCPERQAGFLDGPTGKAAPQLPRGPSSSGADTNSTPNRSSSGP 465 Score = 33.9 bits (76), Expect = 0.37 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Frame = +1 Query: 40 SSKKRRT--CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 ++++RR C+ CG GH + C + +R+ C++CG G Sbjct: 381 AAQQRRAIRCWNCGKEGHSAKQC----------------------RAPRRQGCWKCGKSG 418 Query: 214 HLSSACPNKSA 246 H+ + CP + A Sbjct: 419 HIMANCPERQA 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSA 117 K + + + +R+ C++CG GH+ + CP + A Sbjct: 395 KEGHSAKQCRAPRRQGCWKCGKSGHIMANCPERQA 429
>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6| Length = 1495 Score = 37.0 bits (84), Expect = 0.044 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Frame = +1 Query: 184 RTCYECGIPGHLSSACP------NKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTS 345 R C CG GH CP + E N P ++ K + NK + S Sbjct: 1345 RCCRICGKIGHFMKDCPMRRKVRRRRDQEDALNQRYPENKEKRSKEDKEIHNKYTEREVS 1404 Query: 346 APSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSA 525 +K K +C +P++AKP+ ++ + + P Sbjct: 1405 --TKEDKPIQC------------------TPQKAKPMRAAA-DLGREKILRPPVEKWKRQ 1443 Query: 526 PPKKKKRRTCYECGIAGHLSSECP 597 K + + C+ CG GH+ ECP Sbjct: 1444 DDKDLREKRCFICGREGHIKKECP 1467
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 37.0 bits (84), Expect = 0.044 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 +R+ C++CG SGH+ + CP ++A + +G +P P G +APP Sbjct: 407 RRQGCWKCGKSGHIMANCPERQAGFLG------MGPRGKQPRNFPAAQAPQGLIPTAPP 459 Score = 33.9 bits (76), Expect = 0.37 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Frame = +1 Query: 40 SSKKRRT--CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 ++++RR C+ CG GH + C + +R+ C++CG G Sbjct: 381 AAQQRRAIRCWNCGKEGHSAKQC----------------------RAPRRQGCWKCGKSG 418 Query: 214 HLSSACPNKSA 246 H+ + CP + A Sbjct: 419 HIMANCPERQA 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSA 117 K + + + +R+ C++CG GH+ + CP + A Sbjct: 395 KEGHSAKQCRAPRRQGCWKCGKSGHIMANCPERQA 429
>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 37.0 bits (84), Expect = 0.044 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%) Frame = +1 Query: 286 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 432 P P+ A++Q K +G ++ AP +R+ C++CG GH+ + CP ++A + Sbjct: 374 PSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAP-RRQGCWKCGKPGHIMANCPERQAGFL 432 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 +G +P V P G +APP Sbjct: 433 G------LGPRGKKPRNFPVTQAPQGLIPTAPP 459 Score = 33.1 bits (74), Expect = 0.63 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSA 117 +R+ C++CG PGH+ + CP + A Sbjct: 407 RRQGCWKCGKPGHIMANCPERQA 429 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +1 Query: 31 VPTSSKKRRTC---YECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYEC 201 +P ++ ++R + CG GH + C + +R+ C++C Sbjct: 377 IPFAAAQQRKAIRYWNCGKEGHSARQC----------------------RAPRRQGCWKC 414 Query: 202 GIPGHLSSACPNKSA 246 G PGH+ + CP + A Sbjct: 415 GKPGHIMANCPERQA 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = +1 Query: 409 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 567 P +KA +++ E K G S P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 568 IAGHLSSECP 597 GH+ + CP Sbjct: 416 KPGHIMANCP 425
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 37.0 bits (84), Expect = 0.044 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 R CY CG GHL CP ++++ ++ TT + C C H +S C Sbjct: 543 RKCYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCR 595 Query: 235 NK 240 +K Sbjct: 596 SK 597 Score = 30.8 bits (68), Expect = 3.1 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = +1 Query: 361 RKCYECGISGHLSSACP 411 RKCY CG GHL CP Sbjct: 543 RKCYNCGQIGHLKKNCP 559 Score = 29.6 bits (65), Expect = 6.9 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +1 Query: 547 RTCYECGIAGHLSSECP 597 R CY CG GHL CP Sbjct: 543 RKCYNCGQIGHLKKNCP 559 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +1 Query: 184 RTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEP 288 R CY CG GHL CP + + T EP Sbjct: 543 RKCYNCGQIGHLKKNCPVLNKQNITIQATTTGREP 577
>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING| finger protein 1) Length = 360 Score = 37.0 bits (84), Expect = 0.044 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 5/142 (3%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C C GHL CP+ VI + + K C C GH S CP+K Sbjct: 76 CNNCSQRGHLKRNCPH-----VICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHK 130 Query: 241 SAPEVVS-----NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSA 405 + H++ + Y+ + D + CY CG +GH Sbjct: 131 WKKVFCTLCNSKRHSRERCPSIWRSYLLKTK---DANQGDFDFQTVFCYNCGNAGHFGDD 187 Query: 406 CPNKKATVISPEEAKPVGGSSM 471 C ++++ + + G ++ Sbjct: 188 CAERRSSRVPNTDGSAFCGDNL 209 Score = 36.6 bits (83), Expect = 0.057 Identities = 33/140 (23%), Positives = 45/140 (32%), Gaps = 5/140 (3%) Frame = +1 Query: 190 CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 369 C C GHL CP+ Y +M DD + K C Sbjct: 76 CNNCSQRGHLKRNCPHVICT--------------YCGFM-------DDHYSQHCPKAIIC 114 Query: 370 YECGISGHLSSACPNKKATVI-----SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 C +GH S CP+K V S ++ S + ++ GD Sbjct: 115 TNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDF---- 170 Query: 535 KKKRRTCYECGIAGHLSSEC 594 + CY CG AGH +C Sbjct: 171 --QTVFCYNCGNAGHFGDDC 188 Score = 30.8 bits (68), Expect = 3.1 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 1/80 (1%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVEN-KPSGDTSSAPPKKK 540 KC C GHL CP+ T + S P A+ N +G S P K Sbjct: 75 KCNNCSQRGHLKRNCPHVICTYCGFMDDH---YSQHCPKAIICTNCNANGHYKSQCPHKW 131 Query: 541 KRRTCYECGIAGHLSSECPN 600 K+ C C H CP+ Sbjct: 132 KKVFCTLCNSKRHSRERCPS 151
>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner| cell wall protein) Length = 238 Score = 37.0 bits (84), Expect = 0.044 Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Frame = +1 Query: 157 SATTASKKRRTCY----ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQN- 321 S+T S + TCY + L S CPN A S SEQN Sbjct: 39 SSTCDSLNQVTCYCEHENSAVKKCLDSICPNNDADAAYSAFKSS----------CSEQNA 88 Query: 322 KIDDGSTSAPSKRRKCYECGIS--GHLSSACPNKKATVISPEEAKPVGGSSMEPS---AV 486 + D S+SA S + S SSA + KA+ S + SS PS A Sbjct: 89 SLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSSASSSTKASSSSAAPSSSKAS 148 Query: 487 SVENKPSGDTSSAPPKKKKRRTCY 558 S E+ S +S+ P ++ + Y Sbjct: 149 STESSSSSSSSTKAPSSEESSSTY 172
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 36.6 bits (83), Expect = 0.057 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 K+ C+ CG GH + C + +R+ C++CG GH+ + Sbjct: 384 KRAIKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKSGHIMA 421 Query: 226 ACPNKSAP--EVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPS 354 CP++ A + + P+ + + N +GS+S P+ Sbjct: 422 NCPDRQAGFLRAWTMGKEAPQLPRGPKFAGANTNSTPNGSSSGPT 466 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 10/76 (13%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVI--------SPE--EAKPVGGSSMEPSAVSVENKP 504 +R+ C++CG SGH+ + CP+++A + +P+ G++ + + P Sbjct: 406 RRQGCWKCGKSGHIMANCPDRQAGFLRAWTMGKEAPQLPRGPKFAGANTNSTPNGSSSGP 465 Query: 505 SGDTSSAPPKKKKRRT 552 +G+ +A K ++ T Sbjct: 466 TGEVHAAREKTERAET 481 Score = 29.6 bits (65), Expect = 6.9 Identities = 11/46 (23%), Positives = 25/46 (54%) Frame = +1 Query: 463 SSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSECPN 600 ++ + A+ N S+ + +R+ C++CG +GH+ + CP+ Sbjct: 380 AAQQKRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCPD 425
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 36.6 bits (83), Expect = 0.057 Identities = 19/63 (30%), Positives = 24/63 (38%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 R CY CG GHL C K++ CY CG PGH + C Sbjct: 403 RRCYGCGKTGHLKRNC-------------------------KQQKCYHCGKPGHQARNCR 437 Query: 235 NKS 243 +K+ Sbjct: 438 SKN 440 Score = 35.8 bits (81), Expect = 0.097 Identities = 32/125 (25%), Positives = 41/125 (32%) Frame = +1 Query: 157 SATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDG 336 S T+ + R CY CG GHL C Sbjct: 394 SQTSGPEDGRRCYGCGKTGHLKRNC----------------------------------- 418 Query: 337 STSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDT 516 K++KCY CG GH + C +K S P G S +P ++ S T Sbjct: 419 ------KQQKCYHCGKPGHQARNCRSKNGKCSS----APYGQRS-QPQNNFHQSNMSSVT 467 Query: 517 SSAPP 531 SAPP Sbjct: 468 PSAPP 472 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 340 TSAPSKRRKCYECGISGHLSSACPNKK 420 TS P R+CY CG +GHL C +K Sbjct: 396 TSGPEDGRRCYGCGKTGHLKRNCKQQK 422 Score = 30.0 bits (66), Expect = 5.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKS 114 K++ CY CG PGH + C +K+ Sbjct: 419 KQQKCYHCGKPGHQARNCRSKN 440
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 36.6 bits (83), Expect = 0.057 Identities = 19/63 (30%), Positives = 24/63 (38%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 R CY CG GHL C K++ CY CG PGH + C Sbjct: 403 RRCYGCGKTGHLKRNC-------------------------KQQKCYHCGKPGHQARNCR 437 Query: 235 NKS 243 +K+ Sbjct: 438 SKN 440 Score = 35.8 bits (81), Expect = 0.097 Identities = 32/125 (25%), Positives = 41/125 (32%) Frame = +1 Query: 157 SATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDG 336 S T+ + R CY CG GHL C Sbjct: 394 SQTSGPEDGRRCYGCGKTGHLKRNC----------------------------------- 418 Query: 337 STSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDT 516 K++KCY CG GH + C +K S P G S +P ++ S T Sbjct: 419 ------KQQKCYHCGKPGHQARNCRSKNGKCSS----APYGQRS-QPQNNFHQSNMSSVT 467 Query: 517 SSAPP 531 SAPP Sbjct: 468 PSAPP 472 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 340 TSAPSKRRKCYECGISGHLSSACPNKK 420 TS P R+CY CG +GHL C +K Sbjct: 396 TSGPEDGRRCYGCGKTGHLKRNCKQQK 422 Score = 30.0 bits (66), Expect = 5.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKS 114 K++ CY CG PGH + C +K+ Sbjct: 419 KQQKCYHCGKPGHQARNCRSKN 440
>ZN676_HUMAN (Q8N7Q3) Zinc finger protein 676| Length = 404 Score = 36.6 bits (83), Expect = 0.057 Identities = 44/156 (28%), Positives = 59/156 (37%), Gaps = 8/156 (5%) Frame = +1 Query: 148 NTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKI 327 NT A A +K C ECG + SS + H + K PY E K Sbjct: 85 NTHKAIHAEEKPYKCEECGKASNSSSK---------LMEHKRIHTGEK--PYKCEECGKA 133 Query: 328 DDGSTSAPSKRR--------KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA 483 S+S +R KC ECG + + SS K + + E+ G S Sbjct: 134 FSWSSSLTEHKRIHAGEKPYKCEECGKAFNRSSIL-TKHKIIHTGEKPYKCEGCGKAFSK 192 Query: 484 VSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 591 VS N T A ++K C ECG A + SS+ Sbjct: 193 VSTLN-----THKAIHAEEKPYKCEECGKASNSSSK 223
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 36.2 bits (82), Expect = 0.074 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 511 DTSSAPPKKKKRRTCYECGIAGHLSSEC 594 +TS + PKK +CY CG++GH + +C Sbjct: 840 NTSGSGPKKNGNVSCYNCGVSGHYAQDC 867 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/76 (26%), Positives = 31/76 (40%) Frame = +1 Query: 103 PNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFD 282 P AP V+ ANT + +CY CG+ GH + C S + + Q Sbjct: 830 PVYPAPNVV-----ANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSS----MEANQQGTY 880 Query: 283 EPKYAPYMASEQNKID 330 +YAP + + +D Sbjct: 881 RLRYAPPLPPSNDTLD 896 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +1 Query: 319 NKIDDGSTSAPSKRRK--CYECGISGHLSSAC 408 N + + S S P K CY CG+SGH + C Sbjct: 836 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDC 867
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 36.2 bits (82), Expect = 0.074 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 511 DTSSAPPKKKKRRTCYECGIAGHLSSEC 594 +TS + PKK +CY CG++GH + +C Sbjct: 1109 NTSGSGPKKNGNVSCYNCGVSGHYAQDC 1136 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/76 (26%), Positives = 31/76 (40%) Frame = +1 Query: 103 PNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFD 282 P AP V+ ANT + +CY CG+ GH + C S + + Q Sbjct: 1099 PVYPAPNVV-----ANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSS----MEANQQGTY 1149 Query: 283 EPKYAPYMASEQNKID 330 +YAP + + +D Sbjct: 1150 RLRYAPPLPPSNDTLD 1165 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +1 Query: 319 NKIDDGSTSAPSKRRK--CYECGISGHLSSAC 408 N + + S S P K CY CG+SGH + C Sbjct: 1105 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDC 1136
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 36.2 bits (82), Expect = 0.074 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Frame = +1 Query: 286 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 432 P P+ A++Q K +G ++ AP +R+ C++CG GH+ + CP ++A + Sbjct: 374 PSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAP-RRQGCWKCGKPGHIMANCPERQAGFL 432 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSG-DTSS 522 VG + E S + + PSG DT+S Sbjct: 433 R------VGPTGKEASQLPRDPSPSGADTNS 457 Score = 33.1 bits (74), Expect = 0.63 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSA 117 +R+ C++CG PGH+ + CP + A Sbjct: 407 RRQGCWKCGKPGHIMANCPERQA 429 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +1 Query: 31 VPTSSKKRRTC---YECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYEC 201 +P ++ ++R + CG GH + C + +R+ C++C Sbjct: 377 IPFAAAQQRKAIRYWNCGKEGHSARQC----------------------RAPRRQGCWKC 414 Query: 202 GIPGHLSSACPNKSA 246 G PGH+ + CP + A Sbjct: 415 GKPGHIMANCPERQA 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = +1 Query: 409 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 567 P +KA +++ E K G S P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 568 IAGHLSSECP 597 GH+ + CP Sbjct: 416 KPGHIMANCP 425
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 36.2 bits (82), Expect = 0.074 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 +R+ C++CG SGH+ + CP+++A + +G +P V G T +APP Sbjct: 406 RRQGCWKCGKSGHIMANCPDRQAGFLG------LGPWGKKPRNFPVVPSSQGLTPTAPP 458 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/67 (23%), Positives = 28/67 (41%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 K+ C+ CG GH + C + +R+ C++CG GH+ + Sbjct: 384 KRAIKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKSGHIMA 421 Query: 226 ACPNKSA 246 CP++ A Sbjct: 422 NCPDRQA 428 Score = 29.6 bits (65), Expect = 6.9 Identities = 11/46 (23%), Positives = 25/46 (54%) Frame = +1 Query: 463 SSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSECPN 600 ++ + A+ N S+ + +R+ C++CG +GH+ + CP+ Sbjct: 380 AAQQKRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCPD 425
>POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1460 Score = 36.2 bits (82), Expect = 0.074 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 22/147 (14%) Frame = +1 Query: 166 TASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKI------ 327 T + TC G PG + ++ EV++ P P+ A++Q K Sbjct: 341 TLEEMLTTCQGVGGPGQKARLMA-EALKEVMA--------PAPIPFAAAQQRKTFKCWNC 391 Query: 328 -DDGST----SAPSKRRKCYECGISGHLSSACPNKKATVIS-----------PEEAKPVG 459 +G + SAP +R+ C++CG SGH+ + CP+++A + P P G Sbjct: 392 GKEGHSARQWSAP-RRQGCWKCGKSGHVMANCPDRQAGFLRDWPLGKEGPQLPRGPSPAG 450 Query: 460 GSSMEPSAVSVENKPSGDTSSAPPKKK 540 ++ + + + P+G+ +A K K Sbjct: 451 ANT-NSTPIGSSSGPTGEIYAARKKAK 476 Score = 31.6 bits (70), Expect = 1.8 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSA 117 S+ +R+ C++CG GH+ + CP++ A Sbjct: 402 SAPRRQGCWKCGKSGHVMANCPDRQA 427
>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 498 Score = 35.8 bits (81), Expect = 0.097 Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 8/177 (4%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAP--EVIVDENKANTESATTASKKRRTCYECGIP 210 T + C G PGH + + V V K N ++ +K C+ CG Sbjct: 341 TLEEMMTACQGVGGPGHKARVLAEAMSQVNSVTVMMQKGNFKN----QRKTVKCFNCGKE 396 Query: 211 GHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISG 390 GH++ C AP K+ C++CG G Sbjct: 397 GHIAKNC-------------------------------------RAPRKKG-CWKCGREG 418 Query: 391 HLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPPKKKK 543 H C ++A + P G + EP+A E+ G+ ++ PP+K++ Sbjct: 419 HQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPAESFGFGEETTTPPQKQE 475
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 35.8 bits (81), Expect = 0.097 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 298 PYMASEQNKIDDGSTSAPSKRRK-CYECGISGHLSSACPNKKATVISPEEAKPVGG 462 P + + N+ DG T + + R CY CG GH + CP K+ + S E + G Sbjct: 485 PLIMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 540 Score = 35.8 bits (81), Expect = 0.097 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = +1 Query: 88 LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 +++A + P ++ N+ + + R CY CG PGH + CP K Sbjct: 475 IAAAMSSAIQPLIMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKK 525 Score = 34.7 bits (78), Expect = 0.22 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 13/149 (8%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGH 216 + + R CY CG PGH + CP K + R C C GH Sbjct: 501 SGGRARGLCYTCGSPGHYQAQCPKK-----------------RKSGNSRERCQLCNGMGH 543 Query: 217 LSSACPNKSAPE------VVSNHTQPFDEPKYAPYMASEQNK-------IDDGSTSAPSK 357 + C + + +S+ P EP + ++K I + S P K Sbjct: 544 NAKQCRKRDGNQGQRPGKGLSSGPWPGPEPPAVSLAMTMEHKDRPLVRVILTNTGSHPVK 603 Query: 358 RRKCYECGISGHLSSACPNKKATVISPEE 444 +R Y I+ L S T+IS E+ Sbjct: 604 QRSVY---ITALLDSGA---DITIISEED 626 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +1 Query: 463 SSMEPSAVSVENKP-SGDTSSAPPKKKKRRTCYECGIAGHLSSECP 597 S+++P ++V N+ G T S + R CY CG GH ++CP Sbjct: 481 SAIQPLIMAVVNRERDGQTGSGG---RARGLCYTCGSPGHYQAQCP 523
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I| Length = 218 Score = 35.8 bits (81), Expect = 0.097 Identities = 23/91 (25%), Positives = 34/91 (37%) Frame = +1 Query: 190 CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 369 C+ C GH+ CP D S+++ ++ S P K KC Sbjct: 79 CFACRQQGHIVQDCPEAK------------DNVSICFRCGSKEHSLNACSKKGPLKFAKC 126 Query: 370 YECGISGHLSSACPNKKATVISPEEAKPVGG 462 + C +GHLS C +P+ P GG Sbjct: 127 FICHENGHLSGQCEQ------NPKGLYPKGG 151 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKR----RTCYECGIPGHLSSA 228 C+ C GH+ CP I + S SKK C+ C GHLS Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138 Query: 229 C 231 C Sbjct: 139 C 139
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 35.4 bits (80), Expect = 0.13 Identities = 43/177 (24%), Positives = 61/177 (34%), Gaps = 3/177 (1%) Frame = +1 Query: 7 TRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRR 186 T ++++ VPT S VP SS + SAP + + SA S Sbjct: 573 TTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPAPTPSSSTTESSSAPVTSSTTE 632 Query: 187 TCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRK 366 + +P SS + SAP V + E AP + + S S + Sbjct: 633 SS-SAPVPTPSSSTTESSSAP--VPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTE 689 Query: 367 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDT---SSAP 528 SS+ P +T S P SS S+ + PS T SSAP Sbjct: 690 ----------SSSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP 736 Score = 34.3 bits (77), Expect = 0.28 Identities = 44/184 (23%), Positives = 67/184 (36%), Gaps = 10/184 (5%) Frame = +1 Query: 7 TRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRR 186 T ++++ VPT S VP SS + SAP + + SA S Sbjct: 699 TTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVTSSTTE 758 Query: 187 TCYECGIPGHLSSACPNKSAPEVV--SNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKR 360 + +P SS + SAP S+ T+ P P ++ ++ + T + S Sbjct: 759 SS-SAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSVAPVPTPSSSSN 817 Query: 361 RKCYECGISGHLSSACPNKKATVISP------EEAKPVGGSSMEPSAVSVENKPSGD--T 516 S SS+ + V +P + PV S+ E S V S T Sbjct: 818 ITS-SAPSSTPFSSSTESSSVPVPTPSSSTTESSSAPVSSSTTESSVAPVPTPSSSSNIT 876 Query: 517 SSAP 528 SSAP Sbjct: 877 SSAP 880
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 35.4 bits (80), Expect = 0.13 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG GHL CP ++++ ++ TT + C C H +S C +K Sbjct: 545 CYNCGQIGHLKKNCP-------VLNKQNITIQATTTGREPPDLCPRCKKGKHWASQCRSK 597
>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 35.4 bits (80), Expect = 0.13 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 +R+ C++CG +GH+ + CP ++A + +G +P + P G +APP+ Sbjct: 411 RRQGCWKCGKTGHVMAKCPERQAGFLG------LGPWGKKPRNFPMAQMPQGLIPTAPPE 464 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/67 (23%), Positives = 27/67 (40%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K C+ CG GH + C + +R+ C++CG GH+ + Sbjct: 389 RKTIKCWNCGKEGHSAKQC----------------------RAPRRQGCWKCGKTGHVMA 426 Query: 226 ACPNKSA 246 CP + A Sbjct: 427 KCPERQA 433 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/35 (28%), Positives = 20/35 (57%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSA 117 K + + + +R+ C++CG GH+ + CP + A Sbjct: 399 KEGHSAKQCRAPRRQGCWKCGKTGHVMAKCPERQA 433
>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 510 Score = 35.4 bits (80), Expect = 0.13 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +1 Query: 52 RRT--CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 RRT C+ CG GH + C AP +R+ C++CG PGH + Sbjct: 388 RRTVKCWNCGKEGHTAKQC---KAP-------------------RRQGCWKCGKPGHQMA 425 Query: 226 ACPNK 240 CP + Sbjct: 426 KCPER 430 Score = 33.1 bits (74), Expect = 0.63 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 12/96 (12%) Frame = +1 Query: 283 EPKYAPYMASEQ---------NKIDDGSTSAPSK---RRKCYECGISGHLSSACPNKKAT 426 +P P+ A++Q N +G T+ K R+ C++CG GH + CP ++ Sbjct: 374 QPGPLPFAAAQQQGRRTVKCWNCGKEGHTAKQCKAPRRQGCWKCGKPGHQMAKCPERQVG 433 Query: 427 VISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 + G +P + P G T +APP+ Sbjct: 434 FLG------FGPWGKKPRNFPMAQIPQGLTPTAPPE 463 Score = 30.8 bits (68), Expect = 3.1 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPNK 111 K + + + +R+ C++CG PGH + CP + Sbjct: 398 KEGHTAKQCKAPRRQGCWKCGKPGHQMAKCPER 430
>BTHD_DROME (Q9VYB0) Selenoprotein BthD precursor (dSelM)| Length = 249 Score = 35.0 bits (79), Expect = 0.17 Identities = 27/96 (28%), Positives = 43/96 (44%) Frame = +1 Query: 76 VPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEV 255 +PG + A P KS ENKA T ++T+ K+ E P + S K + E+ Sbjct: 139 LPGSEAIASPKKSESTEEAQENKAPTSTSTSRKSKKEQKSE-EEPTQVDSK-EAKQSKEL 196 Query: 256 VSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRR 363 V QP + K A S++ +D S+ ++R Sbjct: 197 VKTKRQPKAQKKQAKASESQEEVAEDKPPSSQKRKR 232
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 35.0 bits (79), Expect = 0.17 Identities = 32/125 (25%), Positives = 42/125 (33%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + K C+ C PGH + CP +A E N + T CY CG H Sbjct: 123 AKKNAMVCFHCRKPGHGIADCP--AALE--------NQDMGT------GICYRCGSTEHE 166 Query: 220 SSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLS 399 + C K P + PF KC+ CG GHLS Sbjct: 167 ITKCKAKVDPAL---GEFPF---------------------------AKCFVCGEMGHLS 196 Query: 400 SACPN 414 +CP+ Sbjct: 197 RSCPD 201 Score = 30.4 bits (67), Expect = 4.1 Identities = 18/64 (28%), Positives = 24/64 (37%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C+ CG GHLS +CP+ P+ + + C CG HL CP Sbjct: 186 CFVCGEMGHLSRSCPDN--PKGLYADGGG--------------CKLCGSVEHLKKDCPES 229 Query: 241 SAPE 252 E Sbjct: 230 QNSE 233
>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6| Length = 1491 Score = 35.0 bits (79), Expect = 0.17 Identities = 31/138 (22%), Positives = 50/138 (36%) Frame = +1 Query: 184 RTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRR 363 R C CG GH CP + V D P + E+ +D + Sbjct: 1341 RCCRICGKIGHFMKDCPMRRK---VRRRRDQEDTPNQRYSESKEKRSKEDKEI-----QN 1392 Query: 364 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 543 K E +S K T + +AKPV ++++ + P+ + + Sbjct: 1393 KYTEKEVS------TKEDKLTPCAAAKAKPVR-AAVDLGREKLLRTPTEKWKRQDDRDSR 1445 Query: 544 RRTCYECGIAGHLSSECP 597 + C+ CG GH+ ECP Sbjct: 1446 EKRCFICGREGHIKKECP 1463 Score = 31.6 bits (70), Expect = 1.8 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 21/145 (14%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 R C CG GH CP + D+ + + + +KR Sbjct: 1341 RCCRICGKIGHFMKDCPMRRKVRRRRDQEDTPNQRYSESKEKR----------------- 1383 Query: 235 NKSAPEVVSNHTQP---FDEPKYAPYMASEQNKI----DDG--------------STSAP 351 +K E+ + +T+ E K P A++ + D G Sbjct: 1384 SKEDKEIQNKYTEKEVSTKEDKLTPCAAAKAKPVRAAVDLGREKLLRTPTEKWKRQDDRD 1443 Query: 352 SKRRKCYECGISGHLSSACPNKKAT 426 S+ ++C+ CG GH+ CP K + Sbjct: 1444 SREKRCFICGREGHIKKECPQFKGS 1468
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 35.0 bits (79), Expect = 0.17 Identities = 29/125 (23%), Positives = 39/125 (31%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + K C+ C PGH + CP +++ T CY CG H Sbjct: 123 AKKNAMVCFHCRQPGHGIADCP------AVLESQDMGTG----------ICYRCGSTEHE 166 Query: 220 SSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLS 399 S C P + PF KC+ CG GHLS Sbjct: 167 MSKCRANVDPALGEF---PF---------------------------AKCFVCGEMGHLS 196 Query: 400 SACPN 414 +CP+ Sbjct: 197 RSCPD 201 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = +1 Query: 367 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 546 C+ C GH + CP V+ ++ G+ + S E++ S ++ P + Sbjct: 130 CFHCRQPGHGIADCP----AVLESQDM----GTGICYRCGSTEHEMSKCRANVDPALGEF 181 Query: 547 --RTCYECGIAGHLSSECPN 600 C+ CG GHLS CP+ Sbjct: 182 PFAKCFVCGEMGHLSRSCPD 201
>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 35.0 bits (79), Expect = 0.17 Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 14/183 (7%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK------RRT--C 192 T + C G PGH + V+ + T SAT ++ R+T C Sbjct: 341 TLEEMMTACQGVGGPGHKA---------RVLAEAMSQVTNSATIMMQRGNFRNQRKTVKC 391 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCY 372 + CG GH++ C AP K+ C+ Sbjct: 392 FNCGKEGHIAKNC-------------------------------------RAPRKKG-CW 413 Query: 373 ECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPPK 534 +CG GH C ++A + P G S EP+A S E+ G+ ++ P + Sbjct: 414 KCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPSEESVRFGEETTTPSQ 473 Query: 535 KKK 543 K++ Sbjct: 474 KQE 476
>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 35.0 bits (79), Expect = 0.17 Identities = 27/123 (21%), Positives = 47/123 (38%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C+ CG GH++ C + +++ C++CG GH C N+ Sbjct: 391 CFNCGKVGHIAKNC----------------------RAPRKKGCWKCGKEGHQMKDCTNE 428 Query: 241 SAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK 420 F + K A ++SEQ + + + RR+ G LS A +++ Sbjct: 429 GRQANFLRENLAFPQGK-ARELSSEQTRANSPT------RRELQVWGRDNSLSEAGEDRQ 481 Query: 421 ATV 429 TV Sbjct: 482 GTV 484 Score = 25.8 bits (55), Expect(2) = 0.86 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = +1 Query: 364 KCYECGISGHLSSAC--PNKK 420 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKVGHIAKNCRAPRKK 410 Score = 25.4 bits (54), Expect(2) = 0.86 Identities = 7/20 (35%), Positives = 13/20 (65%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECPN 600 +++ C++CG GH +C N Sbjct: 408 RKKGCWKCGKEGHQMKDCTN 427
>GAG_IPHA (P04023) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 572 Score = 34.7 bits (78), Expect = 0.22 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Frame = +1 Query: 52 RRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 R+ C+ CG GHL C APE +++ + CY CG H +S C Sbjct: 446 RKACFNCGRMGHLKKDC---QAPE---------------RTRESKLCYRCGKGYHRASEC 487 Query: 232 P----------------NKSAPEVVSNHT 270 KS P VVS+H+ Sbjct: 488 GIMDSGADKSIISLHWWPKSWPTVVSSHS 516 Score = 33.1 bits (74), Expect = 0.63 Identities = 19/81 (23%), Positives = 26/81 (32%) Frame = +1 Query: 352 SKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 531 S R+ C+ CG GHL C AP Sbjct: 444 SNRKACFNCGRMGHLKKDC-------------------------------------QAPE 466 Query: 532 KKKKRRTCYECGIAGHLSSEC 594 + ++ + CY CG H +SEC Sbjct: 467 RTRESKLCYRCGKGYHRASEC 487
>ZNF93_HUMAN (P35789) Zinc finger protein 93 (Zinc finger protein 505) (Zinc| finger protein HTF34) Length = 620 Score = 34.7 bits (78), Expect = 0.22 Identities = 46/193 (23%), Positives = 67/193 (34%), Gaps = 12/193 (6%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSA------PEVIVDENKANTESATTASKKRRTC----Y 195 KK C ECG SS P + KA S+T +S KR Y Sbjct: 366 KKHYKCEECGKAFIWSSVLTRHKRVHTGEKPYKCEECGKAFKYSSTLSSHKRSHTGEKPY 425 Query: 196 ECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYE 375 +C G A S E++ +P+ + + K KC E Sbjct: 426 KCEECGKAFVASSTLSKHEIIHTGKKPYKCEECGKAFNQSSSLTKHKKIHTGEKPYKCEE 485 Query: 376 CGISGHLSSACPNKKA--TVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRR 549 CG + + SS+ K T P + + G + + S + K ++K Sbjct: 486 CGKAFNQSSSLTKHKKIHTGEKPYKCEECGKAFNQSSTLIKHKKIH--------TREKPY 537 Query: 550 TCYECGIAGHLSS 588 C ECG A HLS+ Sbjct: 538 KCEECGKAFHLST 550
>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 34.7 bits (78), Expect = 0.22 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 14/97 (14%) Frame = +1 Query: 286 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 432 P P+ A++Q K+ +G ++ AP +R+ C++CG +GH+ + CP ++A + Sbjct: 375 PPPIPFAAAQQRKVIRCWNCGKEGHSARQCRAP-RRQGCWKCGKTGHVMAKCPERQAGFL 433 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPS---GDTSSAPPK 534 SM A + PS DT+S P + Sbjct: 434 R--------DGSMGKEAPQLPRGPSSSGADTNSTPSR 462 Score = 33.5 bits (75), Expect = 0.48 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +1 Query: 31 VPTSSKKRRT---CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYEC 201 +P ++ ++R C+ CG GH + C + +R+ C++C Sbjct: 378 IPFAAAQQRKVIRCWNCGKEGHSARQC----------------------RAPRRQGCWKC 415 Query: 202 GIPGHLSSACPNKSA 246 G GH+ + CP + A Sbjct: 416 GKTGHVMAKCPERQA 430
>COAT_CERV (P05399) Probable coat protein| Length = 494 Score = 34.7 bits (78), Expect = 0.22 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 PK KK C+ C I GH ++ECPN Sbjct: 412 PKGKKTCRCWVCNIEGHYANECPN 435 Score = 31.2 bits (69), Expect = 2.4 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +1 Query: 136 ENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPE 252 + K+ KK C+ C I GH ++ CPN+ E Sbjct: 402 DKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNRQTSE 440 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 15/63 (23%) Frame = +1 Query: 283 EPKYAPY-MASEQNKIDDGSTSAPSKRR--------------KCYECGISGHLSSACPNK 417 +PKY Y + ++ K G P ++ +C+ C I GH ++ CPN+ Sbjct: 377 KPKYTKYKVIRKKKKFSPGKYFKPKDKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNR 436 Query: 418 KAT 426 + + Sbjct: 437 QTS 439 Score = 30.8 bits (68), Expect = 3.1 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +1 Query: 10 RKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPE 123 +K+ KK C+ C + GH ++ CPN+ E Sbjct: 403 KKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNRQTSE 440
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 34.7 bits (78), Expect = 0.22 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Frame = +1 Query: 262 NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK---ATVI 432 N+ P +P S+Q+ + + ++PS+ +C C + H+S P K+ A Sbjct: 68 NNNTSVTTPTLSP---SQQSLPTELNVTSPSEE-ECGPCTDTAHVSLITPTKRSCGADSQ 123 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYEC 564 S EA PV + VEN P S K+K RR C++C Sbjct: 124 SESEASPVKRPRL------VEN-PERPEESGRSKQKSRRRCFQC 160
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 34.3 bits (77), Expect = 0.28 Identities = 26/111 (23%), Positives = 38/111 (34%) Frame = +1 Query: 175 KKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPS 354 +KR C+ CG GHL+ C AP Sbjct: 392 QKRIKCFNCGKEGHLARNC-------------------------------------RAPR 414 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 K+ C++CG GH C ++A + A P G + PS + N P+ Sbjct: 415 KKG-CWKCGKEGHQMKDCTERQANFLRENLAFPQGKAREFPSEQTRANSPT 464 Score = 33.5 bits (75), Expect = 0.48 Identities = 22/93 (23%), Positives = 36/93 (38%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +KR C+ CG GHL+ C + +++ C++CG GH Sbjct: 392 QKRIKCFNCGKEGHLARNC----------------------RAPRKKGCWKCGKEGHQMK 429 Query: 226 ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNK 324 C + A + N P + + P SEQ + Sbjct: 430 DCTERQANFLRENLAFPQGKAREFP---SEQTR 459
>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein| p18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 612 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +1 Query: 88 LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEV 255 +++A KS EV+ + N + + C+ CG PGH ++ CP K V Sbjct: 477 MAAALQGKSIKEVLFQQQARNKKGLQKSGNSG--CFVCGQPGHRAAVCPQKHQTSV 530 Score = 30.0 bits (66), Expect = 5.3 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEV 126 C+ CG PGH ++ CP K V Sbjct: 509 CFVCGQPGHRAAVCPQKHQTSV 530
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 34.3 bits (77), Expect = 0.28 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECG 204 T + C G PGH L+ A + P I+ + K N + +K C+ CG Sbjct: 341 TLEEMMTACQGVGGPGHKARVLAEAMSQVTNPATIMIQ-KGNFRN----QRKTVKCFNCG 395 Query: 205 IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 GH++ C AP K+ C++CG Sbjct: 396 KEGHIAKNC-------------------------------------RAPRKKG-CWKCGK 417 Query: 385 SGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 GH C ++A + + A P G + S + N P+ Sbjct: 418 EGHQMKDCTERQANFLREDLAFPQGKAREFSSEQTRANSPT 458 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/69 (20%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 384 NQRKTVKCFNCGKEGHIAKNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSA 246 C + A Sbjct: 422 MKDCTERQA 430
>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.3 bits (77), Expect = 0.28 Identities = 39/179 (21%), Positives = 63/179 (35%), Gaps = 10/179 (5%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECG 204 T + C G PGH L+ A + P I+ + K N + +K C+ CG Sbjct: 341 TLEEMMTACQGVGGPGHKARVLAEAMSQVTNPATIMIQ-KGNFRN----QRKTVKCFNCG 395 Query: 205 IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 GH++ C AP K+ C++CG Sbjct: 396 KEGHIAKNC-------------------------------------RAPRKKG-CWKCGK 417 Query: 385 SGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPPKKKK 543 GH C ++A + P G S EP+A E+ G+ ++ P +K++ Sbjct: 418 EGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQE 476 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/69 (20%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 384 NQRKTVKCFNCGKEGHIAKNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSA 246 C + A Sbjct: 422 MKDCTERQA 430
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 34.3 bits (77), Expect = 0.28 Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 14/185 (7%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK---RRT-----C 192 T + C G PGH + V+ + T SAT ++ RR C Sbjct: 341 TLEEMMTACQGVGGPGHKA---------RVLAEAMSQVTNSATIMMQRGNFRRQGKTVKC 391 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCY 372 + CG GH++ C AP K+ C+ Sbjct: 392 FNCGKEGHIARNC-------------------------------------KAPRKKG-CW 413 Query: 373 ECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPPK 534 +CG GH C ++A + P G S EP+A E+ GD ++ P + Sbjct: 414 KCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGDETTTPSQ 473 Query: 535 KKKRR 549 K++ R Sbjct: 474 KQEPR 478
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 449 Score = 34.3 bits (77), Expect = 0.28 Identities = 17/60 (28%), Positives = 23/60 (38%) Frame = +1 Query: 52 RRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 R C+ C PGHL+ C K+ + C CG PGHL++ C Sbjct: 374 RLVCFNCKKPGHLARQC------------------------KEAKRCNNCGKPGHLAANC 409 Score = 32.0 bits (71), Expect = 1.4 Identities = 35/170 (20%), Positives = 53/170 (31%), Gaps = 1/170 (0%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASK-KRRTCYECGIPG 213 T +K R C E G PG+ +A T T +K R C+ C PG Sbjct: 337 TLEEKLRACQEVGSPGYKMQLLA------------EALTRVQTVQTKGPRLVCFNCKKPG 384 Query: 214 HLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGH 393 HL+ C + ++C CG GH Sbjct: 385 HLARQC----------------------------------------KEAKRCNNCGKPGH 404 Query: 394 LSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 543 L++ C + + G+ A + N+ SAPP ++K Sbjct: 405 LAANC---------WQGGRKTSGNEKVGRAAAPVNQVQQIVPSAPPMEEK 445
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/57 (28%), Positives = 21/57 (36%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 CY CG GH+ CP ++ C +CG PGHL+ C Sbjct: 404 CYNCGKFGHMQRQCPEP----------------------RKMRCLKCGKPGHLAKDC 438 Score = 31.6 bits (70), Expect = 1.8 Identities = 22/97 (22%), Positives = 29/97 (29%) Frame = +1 Query: 304 MASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA 483 M S+ G P KCY CG GH+ CP Sbjct: 383 MQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQCPE----------------------- 419 Query: 484 VSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 P+K + C +CG GHL+ +C Sbjct: 420 ---------------PRKMR---CLKCGKPGHLAKDC 438
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 33.9 bits (76), Expect = 0.37 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 10/181 (5%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECG 204 T + C G PGH L+ A + P I+ + + N + +K C+ CG Sbjct: 341 TLEEMMTACQGVGGPGHKARVLAEAMSQVTNPATIMMQ-RGNFRN----QRKNVKCFNCG 395 Query: 205 IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 GH++ C AP K+ C++CG Sbjct: 396 KEGHIARNC-------------------------------------RAPRKKG-CWKCGK 417 Query: 385 SGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPPKKKKR 546 GH C ++A + P G S EP+A E+ G+ ++ P +K+++ Sbjct: 418 EGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRFGEETATPSQKQEQ 477 Query: 547 R 549 + Sbjct: 478 K 478
>COAT_CAMVN (Q00956) Coat protein| Length = 488 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 PK KK C+ C I GH ++ECPN Sbjct: 404 PKGKKDCRCWICNIEGHYANECPN 427 Score = 33.5 bits (75), Expect = 0.48 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = +1 Query: 136 ENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPE---VVSNHTQPFDEPKYAPY 303 E K + + KK C+ C I GH ++ CPN+ + E ++ + +P APY Sbjct: 394 EKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKVGLQPIEAPY 452 Score = 31.2 bits (69), Expect = 2.4 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +1 Query: 10 RKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPE 123 +K + KK C+ C + GH ++ CPN+ + E Sbjct: 395 KKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSE 432 Score = 29.3 bits (64), Expect = 9.1 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKAT 426 +C+ C I GH ++ CPN++++ Sbjct: 411 RCWICNIEGHYANECPNRQSS 431
>COAT_CAMVC (P03543) Coat protein| Length = 488 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 PK KK C+ C I GH ++ECPN Sbjct: 404 PKGKKDCRCWICNIEGHYANECPN 427 Score = 32.3 bits (72), Expect = 1.1 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 136 ENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPE 252 E K + KK C+ C I GH ++ CPN+ + E Sbjct: 394 EKKGSKRKYCPKGKKDCRCWICNIEGHYANECPNRQSSE 432 Score = 30.4 bits (67), Expect = 4.1 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +1 Query: 10 RKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPE 123 +K + KK C+ C + GH ++ CPN+ + E Sbjct: 395 KKGSKRKYCPKGKKDCRCWICNIEGHYANECPNRQSSE 432 Score = 29.3 bits (64), Expect = 9.1 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKAT 426 +C+ C I GH ++ CPN++++ Sbjct: 411 RCWICNIEGHYANECPNRQSS 431
>ZF260_RAT (Q62981) Zinc finger protein 260 (Zfp-260) (POZF-1) (Pancreas-only| zinc finger protein 1) Length = 407 Score = 33.9 bits (76), Expect = 0.37 Identities = 47/199 (23%), Positives = 74/199 (37%), Gaps = 12/199 (6%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPN-----KSAPEVIVDENKANTESATTASK 177 KA++ + S+ RR Y+CG G S N K E E+K TT + Sbjct: 62 KASSLTRHLRSRSRRESYKCGNCGRTFSQRGNFLSHQKQHAEERPSESKKTPVPMTTIVR 121 Query: 178 KRRTC----YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTS 345 +R Y C G + E + +PF+ + + +Q I + Sbjct: 122 NQRNAGNKPYACKECGKAFNGKSYLKEHEKIHTGEKPFECNQCGRAFSQKQYLIKHQNVH 181 Query: 346 APSKRRKCYECG--ISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA-VSVENKPSGDT 516 + K KC ECG S + + T P E K G + ++ S+ + + +G+ Sbjct: 182 SGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHTGE- 240 Query: 517 SSAPPKKKKRRTCYECGIA 573 K TC ECG A Sbjct: 241 --------KPYTCKECGKA 251
>ZF260_MOUSE (Q62513) Zinc finger protein 260 (Zfp-260)| Length = 407 Score = 33.9 bits (76), Expect = 0.37 Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 15/202 (7%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPN-----KSAPEVIVDENKANTESATTASK 177 +A++ ++ S+ RR Y+CG G S N K E E+K TT + Sbjct: 62 QASSLTLHLRSRPRRESYKCGECGKAFSQRGNFLSHQKQHTEERPSESKKTPVPMTTTVR 121 Query: 178 KRRT-------CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDG 336 +R C ECG + S E + +PF+ + + +Q I Sbjct: 122 NQRNTGNKPYACKECGKAFNGKSYLKEH---EKIHTGEKPFECSQCGRAFSQKQYLIKHQ 178 Query: 337 STSAPSKRRKCYECG--ISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA-VSVENKPS 507 + + K KC ECG S + + T P E K G + ++ S+ + + + Sbjct: 179 NIHSGKKPFKCNECGKAFSQKENLIIHQRIHTGEKPYECKGCGKAFIQKSSLIRHQRSHT 238 Query: 508 GDTSSAPPKKKKRRTCYECGIA 573 G+ K TC ECG A Sbjct: 239 GE---------KPYTCKECGKA 251
>COAT_CAMVS (P03542) Coat protein| Length = 489 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 PK KK C+ C I GH ++ECPN Sbjct: 406 PKGKKDCRCWICNIEGHYANECPN 429 Score = 33.1 bits (74), Expect = 0.63 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 136 ENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPE 252 E K + + KK C+ C I GH ++ CPN+ + E Sbjct: 396 EKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSE 434 Score = 31.2 bits (69), Expect = 2.4 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +1 Query: 10 RKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPE 123 +K + KK C+ C + GH ++ CPN+ + E Sbjct: 397 KKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSE 434 Score = 29.3 bits (64), Expect = 9.1 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKAT 426 +C+ C I GH ++ CPN++++ Sbjct: 413 RCWICNIEGHYANECPNRQSS 433
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 33.9 bits (76), Expect = 0.37 Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 14/183 (7%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTA--------SKKRRTC 192 T + C G PGH + V+ + T SAT +K C Sbjct: 341 TLEEMMTACQGVGGPGHKA---------RVLAEAMSQVTNSATIMMQRGNFRNQRKIVKC 391 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCY 372 + CG GH++ C AP K+ C+ Sbjct: 392 FNCGKEGHIARNC-------------------------------------RAPRKKG-CW 413 Query: 373 ECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPPK 534 +CG GH C ++A + P G S EP+A E+ SG ++ PP+ Sbjct: 414 KCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPPQ 473 Query: 535 KKK 543 K++ Sbjct: 474 KQE 476
>COAT_CAMVD (P03544) Coat protein| Length = 490 Score = 33.9 bits (76), Expect = 0.37 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 PK KK C+ C I GH ++ECPN Sbjct: 405 PKGKKDCRCWICNIEGHYANECPN 428 Score = 33.9 bits (76), Expect = 0.37 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 17/88 (19%) Frame = +1 Query: 136 ENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPE-------VVSNHTQPFDEP-- 288 E K + + KK C+ C I GH ++ CPN+ + E QP +EP Sbjct: 395 EKKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSEKAHILQQAEKLGLQPIEEPYE 454 Query: 289 --------KYAPYMASEQNKIDDGSTSA 348 +Y + DDGS+++ Sbjct: 455 GVQEVFILEYKEEEEETSTEEDDGSSTS 482 Score = 31.2 bits (69), Expect = 2.4 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = +1 Query: 10 RKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPE 123 +K + KK C+ C + GH ++ CPN+ + E Sbjct: 396 KKGSKQKYCPKGKKDCRCWICNIEGHYANECPNRQSSE 433 Score = 29.3 bits (64), Expect = 9.1 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKAT 426 +C+ C I GH ++ CPN++++ Sbjct: 412 RCWICNIEGHYANECPNRQSS 432
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 33.9 bits (76), Expect = 0.37 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Frame = +1 Query: 262 NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK---ATVI 432 N+ P +P S+Q+ + + ++PS +C C + H+S P K+ A Sbjct: 68 NNNTSVTTPTLSP---SQQSLPTELNVTSPSTE-ECGPCTDTAHVSLITPTKRSCGADSQ 123 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYEC 564 S EA PV + VEN P S K+K RR C++C Sbjct: 124 SENEASPVKRPRL------VEN-PERPEESGRSKQKSRRRCFQC 160
>ZN514_HUMAN (Q96K75) Zinc finger protein 514| Length = 400 Score = 33.5 bits (75), Expect = 0.48 Identities = 52/205 (25%), Positives = 71/205 (34%), Gaps = 11/205 (5%) Frame = +1 Query: 7 TRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRR 186 T NN KK C ECG H S + +K Sbjct: 188 TLGGNNSQRTHPEKKSCKCNECGKSFHFQS---------------ELRRHQRCHTGEKPY 232 Query: 187 TCYECGIP-GHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTS------ 345 C +CG GH+SS ++ HT PY SE + S+S Sbjct: 233 ECSDCGRAFGHISSLIKHQ------RTHTGE------KPYECSECGRAFSQSSSLVLHYR 280 Query: 346 --APSKRRKCYECGIS-GHLSSACPNKKA-TVISPEEAKPVGGSSMEPSAVSVENKPSGD 513 K KC ECG + GH SS +++ T P E + G + + S++ V + Sbjct: 281 FHTGEKPYKCNECGRAFGHTSSLIKHQRTHTGEKPYECRECGRTFSQSSSLIVHYR--FH 338 Query: 514 TSSAPPKKKKRRTCYECGIAGHLSS 588 T P K C +CG A SS Sbjct: 339 TGEKPYK------CNKCGRAFSQSS 357
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 33.5 bits (75), Expect = 0.48 Identities = 16/57 (28%), Positives = 21/57 (36%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 CY CG GH+ CP ++ C +CG PGHL+ C Sbjct: 400 CYNCGKFGHMQRQCP----------------------EPRKIKCLKCGKPGHLAKDC 434 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 1/94 (1%) Frame = +1 Query: 316 QNKIDDGS-TSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSV 492 QN + G P KCY CG GH+ CP Sbjct: 382 QNMVQQGGGRGRPRPPPKCYNCGKFGHMQRQCPE-------------------------- 415 Query: 493 ENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 P+K K C +CG GHL+ +C Sbjct: 416 ------------PRKIK---CLKCGKPGHLAKDC 434
>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5| protein) Length = 476 Score = 33.5 bits (75), Expect = 0.48 Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 12/119 (10%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGH 216 T + R C CG+ H CPN+ P + + C CG GH Sbjct: 265 TLREDNRPCPICGLKDHKRYDCPNRKIPNI-----------------QGIVCKICGQTGH 307 Query: 217 LSSACPNKSA------PEVVSNHTQPFD------EPKYAPYMASEQNKIDDGSTSAPSK 357 S C + S N++ P P A ++++ D+ ST P K Sbjct: 308 FSRDCNSSSQRMSRFDRNATVNNSAPIQSNDVHYNSNTHPIQAPKRSRYDNNSTEPPLK 366
>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (Clipper homolog) (Clipper/CPSF 30K) Length = 211 Score = 33.5 bits (75), Expect = 0.48 Identities = 13/53 (24%), Positives = 26/53 (49%) Frame = +1 Query: 436 PEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 P++ +P + P + V + + P+ ++ TCY+CG GH ++ C Sbjct: 150 PQQTQPP--TKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRC 200 Score = 32.7 bits (73), Expect = 0.82 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +1 Query: 103 PNKSAPEVIVDENKANTESATTASK--KRRTCYECGIPGHLSSAC 231 P K AP+VI N+ + + ++ TCY+CG GH ++ C Sbjct: 156 PTKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRC 200
>ZCHC8_CHICK (Q5F3D1) Zinc finger CCHC domain-containing protein 8| Length = 613 Score = 33.5 bits (75), Expect = 0.48 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Frame = +1 Query: 109 KSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNH---TQPF 279 K P +V E T S+ + K + G + ++ C +K +++ + T+ + Sbjct: 38 KPQPSSVVLEEDYKTASSNSVKKIKEAFSVVGSVLYFTNFCLDKLGQPILNENPQLTEGW 97 Query: 280 DEPKYAPYMASEQNKIDDGSTSAPSKRRK--CYECGISGHLSSACPNKKATVISPEEAK 450 + PKY S+ +D KR K C+ CG H CP + E+ K Sbjct: 98 EIPKYQQVF-SQILSLDGQEIQVKPKRPKSHCFNCGSEEHQIKDCPKPRNAARISEKRK 155
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +1 Query: 427 VISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 591 + +PE+ G + A S P ++++PPK KKR T E G + HL ++ Sbjct: 3484 ISAPEKTYKGGSLGCQTEADSDTQSPQYLSATSPPKDKKRPTPLEIGYSSHLRAD 3538
>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 33.1 bits (74), Expect = 0.63 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 +R+ C++CG H+ + CPN++A + +G +P + G T +APP+ Sbjct: 410 RRQGCWKCGKMDHVMAKCPNRQAGFLG------LGPWGKKPRNFPMAQVHQGLTPTAPPE 463 Query: 535 K 537 + Sbjct: 464 E 464 Score = 32.7 bits (73), Expect = 0.82 Identities = 16/67 (23%), Positives = 27/67 (40%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K C+ CG GH + C + +R+ C++CG H+ + Sbjct: 388 RKPIKCWNCGKEGHSARQC----------------------RAPRRQGCWKCGKMDHVMA 425 Query: 226 ACPNKSA 246 CPN+ A Sbjct: 426 KCPNRQA 432
>YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1 intergenic| region Length = 1132 Score = 33.1 bits (74), Expect = 0.63 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 10/173 (5%) Frame = +1 Query: 106 NKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL-----SSACPNKSAPEVVSNHT 270 N S+ +D N++S+T ++ + + L SA P+ ++ + S T Sbjct: 713 NTSSDTFSLDSENVNSKSSTDTTRVAPDLLKSSLQPQLRSDLKQSAVPSSTSSSIYSIET 772 Query: 271 QPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNK---KATVISPE 441 P + AS G ++ SK++ Y+ S + P + K + + Sbjct: 773 SPNIDSSTGK-TASNTKTNSHGPPTSISKQK--YDQSSSHQIPVMSPKRLDDKRKITNRS 829 Query: 442 EAKPVGGSSMEPSAVSVENKPSGDTSSAPP--KKKKRRTCYECGIAGHLSSEC 594 + + GSS E + P+ D+SS+PP KK +A H +S+C Sbjct: 830 CLRTLRGSSNEATLSHNIVYPASDSSSSPPYHSKKPSNPPSSGNLASHEASKC 882
>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1433 Score = 33.1 bits (74), Expect = 0.63 Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 2/159 (1%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAP--EVIVDENKANTESATTASKKRRTCYECGIP 210 T + C G PGH + + V V K N ++ +K C+ CG Sbjct: 341 TLEEMMTACQGVGGPGHKARVLAEAMSQVNSVTVMMQKGNFKN----QRKTVKCFNCGKE 396 Query: 211 GHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISG 390 GH++ C AP K+ C++CG G Sbjct: 397 GHIAKNC-------------------------------------RAPRKKG-CWKCGREG 418 Query: 391 HLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 H C ++A + + A P G + S + N P+ Sbjct: 419 HQMKDCTERQANFLREDLAFPQGKAREFSSEQTRANSPT 457 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/69 (20%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 383 NQRKTVKCFNCGKEGHIAKNC----------------------RAPRKKGCWKCGREGHQ 420 Query: 220 SSACPNKSA 246 C + A Sbjct: 421 MKDCTERQA 429
>YK82_YEAST (P36170) Hypothetical protein YKR102W precursor| Length = 1169 Score = 32.7 bits (73), Expect = 0.82 Identities = 46/202 (22%), Positives = 66/202 (32%), Gaps = 23/202 (11%) Frame = +1 Query: 28 SVPTSSKKRRTCYECGVPGHLSSACP-----NKSAPEVIVDENKANTESATT------AS 174 S +S C EC S P + S+ EV + + + S +T +S Sbjct: 300 SATSSWSSSEVCTECTETESTSYVTPYVTSSSWSSSEVCTECTETESTSTSTPYVTSSSS 359 Query: 175 KKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAP- 351 C EC S P S+ +N+T F + + +E + + STS P Sbjct: 360 SSSEVCTECTETESTSYVTPYVSSSTAAANYTSSFSS---SSEVCTECTETESTSTSTPY 416 Query: 352 ------SKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGD 513 S C EC + S P V S A S S V E + Sbjct: 417 VTSSSWSSSEVCTECTETESTSYVTP----YVSSSTAAANYTSSFSSSSEVCTECTETES 472 Query: 514 TSSAPP-----KKKKRRTCYEC 564 TS++ P C EC Sbjct: 473 TSTSTPYVTSSSSSSSEVCTEC 494
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 32.7 bits (73), Expect = 0.82 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 18/127 (14%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 K++ C+ CG GHL+ C AP +R+ C+ CG GH Sbjct: 397 KRKIKCFNCGKEGHLARNC---KAP-------------------RRKGCWRCGQEGHQMK 434 Query: 226 AC------------PNKSA--PEVVSNHTQPFDEP----KYAPYMASEQNKIDDGSTSAP 351 C P++S V N T+P P Y S++ K + S P Sbjct: 435 DCTGRQVNFLGKGWPSRSGRPGNFVQNRTEPTAPPIESYGYQEEEKSQEKKEGESSLYPP 494 Query: 352 SKRRKCY 372 + + + Sbjct: 495 TSLKSLF 501 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 4/101 (3%) Frame = +1 Query: 304 MASEQNKID----DGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSM 471 M Q + D G + P ++ KC+ CG GHL+ C Sbjct: 377 MVQNQGRADVFFQKGQGAGPKRKIKCFNCGKEGHLARNC--------------------- 415 Query: 472 EPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 K +R+ C+ CG GH +C Sbjct: 416 --------------------KAPRRKGCWRCGQEGHQMKDC 436
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 32.7 bits (73), Expect = 0.82 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECG 204 T + C G PGH L+ A + P I+ + + N + +K C+ CG Sbjct: 341 TLEEMMTACQGVGGPGHKARVLAEAMSQVTNPATIMMQ-RGNFRN----QRKNVKCFNCG 395 Query: 205 IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 GH++ C AP K+ C++CG Sbjct: 396 KEGHIARNC-------------------------------------RAPRKKG-CWKCGK 417 Query: 385 SGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 GH C ++A + + A G + PS + N P+ Sbjct: 418 EGHQMKECTERQANFLREDLAFLQGKAREFPSEQTRANSPT 458 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/69 (20%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 384 NQRKNVKCFNCGKEGHIARNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSA 246 C + A Sbjct: 422 MKECTERQA 430
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 32.7 bits (73), Expect = 0.82 Identities = 21/93 (22%), Positives = 28/93 (30%) Frame = +1 Query: 316 QNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVE 495 QN + G +CY CG GH+ CP Sbjct: 382 QNMVQQGGPKRQRPPLRCYNCGKFGHMQRQCPE--------------------------- 414 Query: 496 NKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 P+K K C +CG GHL+ +C Sbjct: 415 -----------PRKTK---CLKCGKLGHLAKDC 433 Score = 31.2 bits (69), Expect = 2.4 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Frame = +1 Query: 19 NNDSVPTSSKKRRT----CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRR 186 N + V KR+ CY CG GH+ CP ++ Sbjct: 381 NQNMVQQGGPKRQRPPLRCYNCGKFGHMQRQCP----------------------EPRKT 418 Query: 187 TCYECGIPGHLSSAC 231 C +CG GHL+ C Sbjct: 419 KCLKCGKLGHLAKDC 433 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +1 Query: 526 PPKKKKRRTCYECGIAGHLSSECP 597 P +++ CY CG GH+ +CP Sbjct: 390 PKRQRPPLRCYNCGKFGHMQRQCP 413
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 32.7 bits (73), Expect = 0.82 Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 8/164 (4%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK------RRT--C 192 T + C G PGH + V+ + T SAT ++ R+T C Sbjct: 341 TLEEMMTACQGVGGPGHKA---------RVLAEAMSQVTNSATIMMQRGNFRNQRKTVKC 391 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCY 372 + CG GH++ C AP K+ C+ Sbjct: 392 FNCGKEGHIAKNC-------------------------------------RAPRKKG-CW 413 Query: 373 ECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKP 504 +CG GH C ++A + + A P G + S + N P Sbjct: 414 KCGKEGHQMKDCTERQANFLREDLAFPQGKARKFSSEQTRANSP 457 Score = 30.8 bits (68), Expect = 3.1 Identities = 26/130 (20%), Positives = 51/130 (39%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 384 NQRKTVKCFNCGKEGHIAKNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLS 399 C + A + + P + A +SEQ + ++P +R + + LS Sbjct: 422 MKDCTERQANFLREDLAFPQGK---ARKFSSEQTR-----ANSPIRRERQVWRRDNNSLS 473 Query: 400 SACPNKKATV 429 A +++ TV Sbjct: 474 EAGADRQGTV 483
>S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125)| Length = 1000 Score = 32.7 bits (73), Expect = 0.82 Identities = 26/109 (23%), Positives = 40/109 (36%) Frame = +1 Query: 202 GIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECG 381 GI +L S P+ P N Q +P Y PY + + AP + ++C G Sbjct: 151 GINSYLPSQ-PSSLPPSYFGNQPQGIPQPGYNPYRHTPGSS-RANPYIAPPQLQQCQTPG 208 Query: 382 ISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAP 528 H + P + + P PV S P+ V +P + P Sbjct: 209 PPAHPPPSGPPVQMYQMPPGSLPPVPSSVQSPAQQQVPARPGAPSVQVP 257
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.7 bits (73), Expect = 0.82 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 516 +++ C++CG GH C ++A + P G S EP+A E+ SG Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVE 467 Query: 517 SSAPPKKKK 543 ++ PP+K++ Sbjct: 468 TTTPPQKQE 476 Score = 25.0 bits (53), Expect(2) = 5.3 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = +1 Query: 364 KCYECGISGHLSSAC--PNKK 420 KC+ CG GH + C P KK Sbjct: 390 KCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 5.3 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSEC 594 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/60 (21%), Positives = 23/60 (38%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C+ CG GH++ C + +++ C++CG GH C N+ Sbjct: 391 CFNCGKVGHIAKNC----------------------RAPRKKGCWKCGKEGHQMKDCTNE 428 Score = 25.8 bits (55), Expect(2) = 0.93 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = +1 Query: 364 KCYECGISGHLSSAC--PNKK 420 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKVGHIAKNCRAPRKK 410 Score = 25.4 bits (54), Expect(2) = 0.93 Identities = 7/20 (35%), Positives = 13/20 (65%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSECPN 600 +++ C++CG GH +C N Sbjct: 408 RKKGCWKCGKEGHQMKDCTN 427
>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/60 (25%), Positives = 31/60 (51%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 +R++C++CG H+ + CP+++A + +G +P + G T +APP+ Sbjct: 410 RRQRCWKCGKMDHVMAKCPDRQAGFLG------LGPWGKKPRNFPMAQVHQGLTPTAPPE 463 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/67 (22%), Positives = 27/67 (40%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K C+ CG GH + C + +R+ C++CG H+ + Sbjct: 388 RKPIKCWNCGKEGHSARQC----------------------RAPRRQRCWKCGKMDHVMA 425 Query: 226 ACPNKSA 246 CP++ A Sbjct: 426 KCPDRQA 432
>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 506 Score = 32.3 bits (72), Expect = 1.1 Identities = 38/185 (20%), Positives = 61/185 (32%), Gaps = 14/185 (7%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTA--------SKKRRTC 192 T + C G PGH + V+ + T SAT +K C Sbjct: 344 TLEEMMTACQGVGGPGHKA---------RVLAEAMSQVTNSATIMMQRGNFRNQRKIIKC 394 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCY 372 + CG GH++ C AP KR C+ Sbjct: 395 FNCGKEGHIAKNC-------------------------------------RAPRKRG-CW 416 Query: 373 ECGISGHLSSACPNKKATVISPEEAKPVG------GSSMEPSAVSVENKPSGDTSSAPPK 534 +CG GH C ++A + G S EP+A E+ G+ ++ P + Sbjct: 417 KCGKEGHQMKDCTERQANFLGKIWPSCKGRPGNFPQSRTEPTAPPEESFRFGEETTTPYQ 476 Query: 535 KKKRR 549 K++++ Sbjct: 477 KQEKK 481
>CYTSA_MOUSE (Q2KN98) Cytospin-A| Length = 1118 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +1 Query: 91 SSACPNKSAPEVIVDENKANTESATTASKKRRT 189 SSA P+ AP + + ENK+ + T++S KR T Sbjct: 80 SSAAPSAPAPAMTISENKSKISTGTSSSAKRST 112
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.3 bits (72), Expect = 1.1 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 27/196 (13%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRT--------- 189 T + C G PGH + ++ E + ++TT +R Sbjct: 341 TLEEMMTACQGVGGPGHKAR----------VLAEAMSQVTNSTTIMMQRGNFRNQRKIVK 390 Query: 190 CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 369 C+ CG GH++ C AP K+ C Sbjct: 391 CFNCGKEGHIARNC-------------------------------------KAPRKKG-C 412 Query: 370 YECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPSAVSVE 495 ++CG GH C ++A + PE A P S EP+A E Sbjct: 413 WKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPTAPPEE 472 Query: 496 NKPSGDTSSAPPKKKK 543 + SG ++ PP+K++ Sbjct: 473 SFRSGVETTTPPQKQE 488
>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (NS1 effector domain-binding protein 1) (Neb-1) (No arches homolog) Length = 269 Score = 32.3 bits (72), Expect = 1.1 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +1 Query: 475 PSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 P + V + + P+ ++ TCY+CG GH ++ C Sbjct: 219 PQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRC 258
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/67 (23%), Positives = 26/67 (38%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +KR C+ CG GHL+ C + +++ C++CG GH Sbjct: 392 QKRIKCFNCGKEGHLARNC----------------------RAPRKKGCWKCGKEGHQMK 429 Query: 226 ACPNKSA 246 C + A Sbjct: 430 DCTERQA 436 Score = 29.6 bits (65), Expect = 6.9 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Frame = +1 Query: 355 KRRKCYECGISGHLSSAC--PNKK 420 KR KC+ CG GHL+ C P KK Sbjct: 393 KRIKCFNCGKEGHLARNCRAPRKK 416
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 32.3 bits (72), Expect = 1.1 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Frame = +1 Query: 262 NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVI--- 432 N+ P +P S+Q + + ++PSK +C C + H+S P K++ Sbjct: 68 NNNTSITTPTLSP---SQQPLPTELNVTSPSKE-ECGPCTDTAHVSLITPTKRSCGTDSQ 123 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYEC 564 S EA PV + +EN + +S K+K RR C++C Sbjct: 124 SENEASPVKRPRL------LENTERSEETSRS-KQKSRRRCFQC 160 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/126 (19%), Positives = 51/126 (40%) Frame = +1 Query: 1 FGTRKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK 180 F ++ ++DS P++S + + ++ + + P + + TE T+ K Sbjct: 39 FQKKQPDDDSAPSTSNSQSDLFSEETTSDNNNT--SITTPTLSPSQQPLPTELNVTSPSK 96 Query: 181 RRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKR 360 C C H+S P K + S ++ P P + + ++ S S R Sbjct: 97 EE-CGPCTDTAHVSLITPTKRSCGTDSQ-SENEASPVKRPRLLENTERSEETSRSKQKSR 154 Query: 361 RKCYEC 378 R+C++C Sbjct: 155 RRCFQC 160
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/69 (23%), Positives = 27/69 (39%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C AP +++ C++CG GH Sbjct: 384 NQRKIVKCFNCGKEGHIARNC---KAP-------------------RKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSA 246 C + A Sbjct: 422 MKDCTERQA 430 Score = 26.2 bits (56), Expect(2) = 1.1 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = +1 Query: 364 KCYECGISGHLSSAC--PNKK 420 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410 Score = 24.6 bits (52), Expect(2) = 1.1 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = +1 Query: 532 KKKKRRTCYECGIAGHLSSEC 594 K +++ C++CG GH +C Sbjct: 405 KAPRKKGCWKCGKEGHQMKDC 425
>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 956 Score = 32.0 bits (71), Expect = 1.4 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +1 Query: 508 GDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 G T+ + KK +CY CG GH + +C Sbjct: 900 GSTNGSSHKKSGNLSCYNCGATGHRAQDC 928
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG PGHL+ C ++ C+ CG GH+ C K Sbjct: 387 CYNCGKPGHLARQC------------------------RQGIICHHCGKRGHMQKDCRQK 422 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +1 Query: 415 KKATVISPEEA-KPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 591 ++ATV +A + VG + ++ +P G +K + CY CG GHL+ + Sbjct: 344 QQATVEEKMQACRDVGSEGFKMQLLAQALRPQGKAG----QKGVNQKCYNCGKPGHLARQ 399 Query: 592 C 594 C Sbjct: 400 C 400
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG PGHL+ C ++ C+ CG GH+ C K Sbjct: 387 CYNCGKPGHLARQC------------------------RQGIICHHCGKRGHMQKDCRQK 422
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG PGHL+ C ++ C+ CG GH+ C K Sbjct: 387 CYNCGKPGHLARQC------------------------RQGIICHHCGKRGHMQKDCRQK 422
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG PGHL+ C ++ C+ CG GH+ C K Sbjct: 387 CYNCGKPGHLARQC------------------------RQGIICHHCGKRGHMQKDCRQK 422
>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 308 Score = 32.0 bits (71), Expect = 1.4 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Frame = +1 Query: 154 ESATTASKKRRTCYECG---IPGHLSSACPNKSAPEVV-SNHTQPFDEPKYAPYMASEQN 321 E+A +S + E G + G S A A E + +N + P A+++ Sbjct: 20 EAAVASSPSKANGQENGHVKVNGDASPAAAEPGAKEELQANGSAP----------AADKE 69 Query: 322 KIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEE-----AKPVGGSSMEPSAV 486 + GS + P+ K E + + +K+A P E A+ G S+ S+ Sbjct: 70 EPASGSAATPAAAEKD-EAAAATEPGAGAADKEAAEAEPAEPSSPAAEAEGASASSTSSP 128 Query: 487 SVENKPSGDTSSAPPKKKKRRTCYE 561 E+ + SS PKKKK+R ++ Sbjct: 129 KAEDGAAPSPSSETPKKKKKRFSFK 153
>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1431 Score = 32.0 bits (71), Expect = 1.4 Identities = 33/161 (20%), Positives = 51/161 (31%), Gaps = 4/161 (2%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGH----LSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECG 204 T + C G PGH L+ A + V + N + + K C+ CG Sbjct: 338 TLEEMMTACQGVGGPGHKARVLAEAMSQVTGSATAVMMQRGNFKGPRKSIK----CFNCG 393 Query: 205 IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 GH + C AP K+ C++CG Sbjct: 394 KEGHTAKNC-------------------------------------RAPRKKG-CWKCGR 415 Query: 385 SGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 GH C ++A + + A P G + S + N P+ Sbjct: 416 EGHQMKDCTERQANFLREDLAFPQGKAGEFSSEQTRANSPT 456
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/57 (26%), Positives = 23/57 (40%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 C+ C PGHL+ C ++ + C +CG PGHL++ C Sbjct: 377 CFNCKKPGHLARQC------------------------REVKKCNKCGKPGHLAAKC 409
>TNR1B_HUMAN (P20333) Tumor necrosis factor receptor superfamily member 1B| precursor (Tumor necrosis factor receptor 2) (TNF-R2) (Tumor necrosis factor receptor type II) (p75) (p80 TNF-alpha receptor) (CD120b antigen) (Etanercept) [Contains: Tumor necrosi Length = 461 Score = 32.0 bits (71), Expect = 1.4 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 16/68 (23%) Frame = +1 Query: 145 ANTESATTASKKRRTCYECGIPGHLS------SACPNKS-APEVV---------SNHTQP 276 +NT S+T + + C IPG+ S S P +S AP V S HTQP Sbjct: 170 SNTTSSTDICRPHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVSTRSQHTQP 229 Query: 277 FDEPKYAP 300 EP AP Sbjct: 230 TPEPSTAP 237
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPS 480 +++ C++CG GH C ++A + PE A P S EP+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPT 467 Query: 481 AVSVENKPSGDTSSAPPKKKK 543 A E+ SG ++ PP+K++ Sbjct: 468 APPEESFRSGVETTTPPQKQE 488 Score = 25.4 bits (54), Expect(2) = 4.1 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 355 KRRKCYECGISGHLSSAC--PNKK 420 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 4.1 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSEC 594 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPS 480 +++ C++CG GH C ++A + PE A P S EP+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPT 467 Query: 481 AVSVENKPSGDTSSAPPKKKK 543 A E+ SG ++ PP+K++ Sbjct: 468 APPEESFRSGVETTTPPQKQE 488 Score = 25.4 bits (54), Expect(2) = 4.1 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 355 KRRKCYECGISGHLSSAC--PNKK 420 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 4.1 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSEC 594 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)| (Microtubule-associated protein-U) (MAP-U) Length = 1072 Score = 31.6 bits (70), Expect = 1.8 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 4/146 (2%) Frame = +1 Query: 118 PEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVV----SNHTQPFDE 285 P + D A T+ AT+ + ++ + G SA P ++PE V H+ P DE Sbjct: 535 PVPVKDMETAQTQEATSEDSQLKSLQDEG-----QSAVPLMTSPEAVVAMGQKHSLPTDE 589 Query: 286 PKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGS 465 + EQ K PS + +S P++ + V PEE P G Sbjct: 590 DSVLEEL--EQKK--------PSSQ------------TSELPSETSGVAKPEEGPPTG-- 625 Query: 466 SMEPSAVSVENKPSGDTSSAPPKKKK 543 S + P+ + +P KK K Sbjct: 626 --SVSGNDITAPPNKELPPSPEKKTK 649
>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1436 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/130 (21%), Positives = 51/130 (39%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C+ CG GH Sbjct: 386 NQRKTVKCFNCGKEGHIAKNC----------------------RAPRKKGCWRCGREGHQ 423 Query: 220 SSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLS 399 C + A + F + K A +SEQ + ++P++R G + LS Sbjct: 424 MKDCTERQANFL--REDLAFLQGK-AREFSSEQTR-----ANSPTRRELQVWGGENNSLS 475 Query: 400 SACPNKKATV 429 A +++ TV Sbjct: 476 EAGADRQGTV 485
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSA 228 +R C+ CG GHL+ C + +++ C++CG GH Sbjct: 381 RRIKCFNCGKEGHLAKNC----------------------RAPRKKGCWKCGKEGHQMKD 418 Query: 229 CPNKSAPEV----VSNHTQPFDEPKYAP 300 C + A + SN +P + P+ P Sbjct: 419 CTERQANFLGKIWPSNKGRPGNFPQSRP 446
>RXRA_BRARE (Q90416) Retinoic acid receptor RXR-alpha (Retinoid X receptor| alpha) Length = 441 Score = 31.6 bits (70), Expect = 1.8 Identities = 30/119 (25%), Positives = 42/119 (35%) Frame = +1 Query: 211 GHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISG 390 GHLSS +VS+H +PY + + S S P+ Y G Sbjct: 19 GHLSSPPSQPPLSSMVSHHHPSIINGLGSPYSVITSSSLGSPSASMPTTSNMGY-----G 73 Query: 391 HLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECG 567 L+S N +V S E+ KP P + + P G P + C CG Sbjct: 74 ALNSPQMNSLNSVSSSEDIKP------PPGLAGLGSYPCGS-----PGSLSKHICAICG 121
>MUCEN_MOUSE (Q9R0H2) Endomucin precursor (Endomucin-1/2)| Length = 261 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Frame = +1 Query: 10 RKANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSA----PEVIVDENKANTESATTASK 177 + NDS+PT ++ T +PG +S PNK A PE + + T TT + Sbjct: 24 KDVQNDSIPTPAETSTTKASVTIPGIVSVTNPNKPADGTPPEGTTKSDVSQTSLVTTINS 83 Query: 178 KRRTCYECG 204 +E G Sbjct: 84 LTTPKHEVG 92
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 31.6 bits (70), Expect = 1.8 Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 8/165 (4%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKK---RRT-----C 192 T + C G PGH + V+ + T SAT ++ RR C Sbjct: 341 TLEEMMTACQGVGGPGHKA---------RVLAEAMSQVTNSATIMMQRGNFRRQGKTVKC 391 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCY 372 + CG GH++ C AP K+ C+ Sbjct: 392 FNCGKEGHIARNC-------------------------------------KAPRKKG-CW 413 Query: 373 ECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 +CG GH C ++A + + A P G + S + N P+ Sbjct: 414 KCGREGHQMKDCTERQANFLREDLAFPQGKAREFSSEQTRANSPT 458
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 31.6 bits (70), Expect = 1.8 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 15/186 (8%) Frame = +1 Query: 37 TSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRT--------- 189 T + C G PGH + ++ E + ++TT +R Sbjct: 341 TLEEMMTACQGVGGPGHKAR----------VLAEAMSQVTNSTTIMMQRGNFRNQRKIIK 390 Query: 190 CYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 369 C+ CG GHL+ C AP K+ C Sbjct: 391 CFNCGKEGHLARNC-------------------------------------RAPRKKG-C 412 Query: 370 YECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDTSSAPP 531 ++CG GH C ++A + P G S EP+A E+ G+ ++ P Sbjct: 413 WKCGKEGHQMKDCNERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETTTPS 472 Query: 532 KKKKRR 549 +K++ R Sbjct: 473 QKQEPR 478
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSA 228 +R C+ CG GHL+ C + +++ C++CG GH Sbjct: 381 RRIKCFNCGKEGHLAKNC----------------------RAPRKKGCWKCGKEGHQMKD 418 Query: 229 CPNKSA 246 C + A Sbjct: 419 CTERQA 424
>AMY_BUTFI (P30269) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 976 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = +1 Query: 82 GHLSSACPNKSAPEVIVDENKANTESATTAS 174 G++S+A +S +++DE K NTESAT AS Sbjct: 26 GNVSTAYAMESNDALVLDETKENTESATDAS 56
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 31.2 bits (69), Expect = 2.4 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECP 597 P +R CY CG GH S ECP Sbjct: 154 PGMGERTGCYRCGQEGHWSKECP 176
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 446 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG PGHL+ C ++ C+ CG GH+ C K Sbjct: 386 CYYCGKPGHLARQC------------------------RQGIICHHCGKRGHMQKDCRQK 421
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 31.2 bits (69), Expect = 2.4 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 3/120 (2%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSAC--PNKSAPEVIVDENKANTESATTASKKRRTCYECGIPG 213 S +RTC+ CG PGH C P+K + + C +CG Sbjct: 453 SRNDQRTCFNCGKPGHFKKDCRAPDKQGGTLTL-------------------CSKCGKGY 493 Query: 214 HLSSACPNKSAPEVVSNHTQPFD-EPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISG 390 H + C +S ++ P D + Y P +GS+ S+ K G+SG Sbjct: 494 HRADQC--RSVRDIKGRVLPPPDSQSAYVP---------KNGSSGPRSQGLKDMGTGLSG 542 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 R C E G P L++A A ++ +N++ + + +RTC+ CG PGH C Sbjct: 426 RVCRELGGP--LTNA---GLAAAILQSQNRSMSRN------DQRTCFNCGKPGHFKKDC 473
>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 31.2 bits (69), Expect = 2.4 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = +1 Query: 355 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 507 +R+ C++CG GH C ++A + + A P G + S + N P+ Sbjct: 410 RRKGCWKCGKEGHQLKDCTERQANFLREDLAFPQGKAGELSSEQTRANSPT 460 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/67 (22%), Positives = 25/67 (37%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K C+ CG GH++ C + +R+ C++CG GH Sbjct: 388 RKTIKCFNCGKEGHIAKNC----------------------RAPRRKGCWKCGKEGHQLK 425 Query: 226 ACPNKSA 246 C + A Sbjct: 426 DCTERQA 432 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 420 G+ P K KC+ CG GH++ C P +K Sbjct: 382 GNFKGPRKTIKCFNCGKEGHIAKNCRAPRRK 412
>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSAC--PNKKATVISPEEAKPVGGSSMEPSAVSVENK-- 501 G+ P K KC+ CG GH++ C P KK +E + + + EN Sbjct: 381 GNFKGPRKIIKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFLRENLAF 440 Query: 502 PSGDTSSAPPKKKK 543 P G PK+ + Sbjct: 441 PQGKAGELSPKQTR 454
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/57 (26%), Positives = 22/57 (38%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 C+ C PGHL+ C + + C +CG PGHL++ C Sbjct: 377 CFNCKKPGHLARQC------------------------RDVKKCNKCGKPGHLAAKC 409
>CYTSA_PANTR (Q2KNA1) Cytospin-A| Length = 1117 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +1 Query: 73 GVPGHLS---SACPNKSAPEVIVDENKANTESATTASKKRRT 189 GV G S SA P+ SAP + ENK+ + T +S KR T Sbjct: 71 GVKGKKSTCPSAAPSASAPAMTTVENKSKISTGTASSTKRNT 112
>TOP3A_MOUSE (O70157) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase| III alpha) Length = 1003 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +1 Query: 118 PEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 PE +A + A + KK R C C PGH + CP Sbjct: 962 PEAASKRPRAGSSDAGSTVKKPRKCSLCHQPGHTRTFCP 1000 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +1 Query: 460 GSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSECP 597 G + P A S +P +S A KK R C C GH + CP Sbjct: 957 GKAQRPEAAS--KRPRAGSSDAGSTVKKPRKCSLCHQPGHTRTFCP 1000
>PQBP1_RAT (Q6PCT5) Polyglutamine-binding protein 1 (Polyglutamine| tract-binding protein 1) (PQBP-1) Length = 263 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +1 Query: 412 NKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 591 NKKAT EE P M+PS+ S + P G S+ PK+ + +T + AG L + Sbjct: 188 NKKATSRKDEELDP-----MDPSSYS--DAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQ 240 Query: 592 CP 597 P Sbjct: 241 RP 242
>PQBP1_MOUSE (Q91VJ5) Polyglutamine-binding protein 1 (Polyglutamine| tract-binding protein 1) (PQBP-1) (38 kDa nuclear protein containing a WW domain) (Npw38) Length = 263 Score = 30.8 bits (68), Expect = 3.1 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +1 Query: 412 NKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 591 NKKAT EE P M+PS+ S + P G S+ PK+ + +T + AG L + Sbjct: 188 NKKATSRKDEELDP-----MDPSSYS--DAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQ 240 Query: 592 CP 597 P Sbjct: 241 RP 242
>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/67 (22%), Positives = 25/67 (37%) Frame = +1 Query: 46 KKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSS 225 +K C+ CG GH++ C + +R+ C++CG GH Sbjct: 388 RKTIKCFNCGKEGHIAKNC----------------------RAPRRKGCWKCGKEGHQLK 425 Query: 226 ACPNKSA 246 C + A Sbjct: 426 DCTERQA 432 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 420 G+ P K KC+ CG GH++ C P +K Sbjct: 382 GNFKGPRKTIKCFNCGKEGHIAKNCRAPRRK 412
>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor| (N-CAM 180) (NCAM-180) Length = 1115 Score = 30.8 bits (68), Expect = 3.1 Identities = 27/100 (27%), Positives = 40/100 (40%) Frame = +1 Query: 226 ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSA 405 A P+K V ++ + P PK AP + + D TSAPS + +LSS Sbjct: 875 ATPSKG---VTASSSSPASAPKVAPLV-----DLSDTPTSAPS----------ASNLSST 916 Query: 406 CPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSA 525 + V+SP G +S P A P+ + A Sbjct: 917 VLANQGAVLSPSTPASAGETSKAPPASKASPAPTPTPAGA 956
>ZN708_HUMAN (P17019) Zinc finger protein 708 (Zinc finger protein 15-like 1)| (Zinc finger protein KOX8) Length = 563 Score = 30.8 bits (68), Expect = 3.1 Identities = 50/202 (24%), Positives = 70/202 (34%), Gaps = 15/202 (7%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSA------PEVIVDENKANTESATTA-------SKK 180 + +K C ECG SS N P + KA +S+T +K Sbjct: 191 TGEKPYKCEECGKAFKKSSNLTNHKIIHTGEKPYKCEECGKAFNQSSTLTRHKIIHTGEK 250 Query: 181 RRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKR 360 C ECG + SS N + ++V +P+ + N + K Sbjct: 251 LYKCEECGKAFNRSS---NLTKHKIVHTGEKPYKCEECGKAFKQSSNLTNHKKIHTGEKP 307 Query: 361 RKCYECGISGHLSSACPNKKA--TVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 534 KC ECG + LSS K T P + + G + S S K + P Sbjct: 308 YKCGECGKAFTLSSHLTTHKRIHTGEKPYKCEECGKAF---SVFSTLTKHKIIHTEEKPY 364 Query: 535 KKKRRTCYECGIAGHLSSECPN 600 K C ECG A + SS N Sbjct: 365 K-----CEECGKAFNRSSHLTN 381
>ZFP59_MOUSE (P16373) Zinc finger protein 59 (Zfp-59) (Zinc finger protein| Mfg-2) Length = 634 Score = 30.8 bits (68), Expect = 3.1 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Frame = +1 Query: 97 ACPNKSAPEVIVDENKANTESATTASKKRRTCYECG----IPGHLSSACPNKSAPEVVSN 264 AC A +++ K+++ ++ C ECG +P L+S ++V Sbjct: 442 ACGKSLANTLLIHHQKSHS------GERPFECKECGKAFLLPSQLNSH-------KIVHT 488 Query: 265 HTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECG 381 +PF+ E N I G+ A K +C ECG Sbjct: 489 SKRPFECKVCGKSFKRESNLIQHGAVHAGVKSYECSECG 527
>MARCS_RAT (P30009) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (Protein kinase C substrate 80 kDa protein) Length = 308 Score = 30.8 bits (68), Expect = 3.1 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Frame = +1 Query: 154 ESATTASKKRRTCYECG---IPGHLSSACPNKSAPEVV-SNHTQPFDEPKYAPYMASEQN 321 E+A +S + E G + G S A A E + +N + P A+++ Sbjct: 20 EAAVASSPSKANGQENGHVKVNGDASPAAAEPGAKEELQANGSAP----------AADKE 69 Query: 322 KIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEE-----AKPVGGSSMEPSAV 486 + G + P+ K E + +A +K+A P E A+ G S+ S+ Sbjct: 70 EPASGGAATPAAADKD-EAAAAPEPGAATADKEAAEAEPAEPGSPSAETEGASASSTSSP 128 Query: 487 SVENKPSGDTSSAPPKKKKRRTCYE 561 E+ + SS PKKKK+R ++ Sbjct: 129 KAEDGAAPSPSSETPKKKKKRFSFK 153
>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/57 (26%), Positives = 22/57 (38%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSAC 231 C+ C PGHL+ C + + C +CG PGHL++ C Sbjct: 377 CFNCKRPGHLARQC------------------------RDVKKCNKCGKPGHLAAKC 409
>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1440 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/69 (21%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + ++R C++CG GH Sbjct: 387 NQRKIIKCFNCGKEGHIAKNC----------------------RAPRKRGCWKCGKEGHQ 424 Query: 220 SSACPNKSA 246 C + A Sbjct: 425 MKDCTERQA 433
>CYTSA_HUMAN (Q69YQ0) Cytospin-A (NY-REN-22 antigen)| Length = 1117 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +1 Query: 73 GVPGHLS---SACPNKSAPEVIVDENKANTESATTASKKRRT 189 GV G S SA P+ SAP + ENK+ + T +S KR T Sbjct: 71 GVKGKKSTCPSAAPSASAPAMTTVENKSKISTGTASSTKRST 112
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 25.4 bits (54), Expect(2) = 3.8 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 355 KRRKCYECGISGHLSSAC--PNKK 420 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 3.8 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSEC 594 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 25.4 bits (54), Expect(2) = 3.8 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = +1 Query: 355 KRRKCYECGISGHLSSAC--PNKK 420 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 3.8 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSEC 594 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein| 89) Length = 8081 Score = 30.4 bits (67), Expect = 4.1 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 2/147 (1%) Frame = +1 Query: 109 KSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEP 288 + PE + ++ K+ T+ + K I + S + +PE V + Sbjct: 1529 EKTPEKVDEKPKSPTKKDKSPEKS--------ITEEIKSPVKKEKSPEKVEEKPASPTKK 1580 Query: 289 KYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEA--KPVGG 462 + +P + K + +P+K+ K E + L S P +K SPE+A KP Sbjct: 1581 EKSPEKPASPTKKSENEVKSPTKKEKSPEKSVVEELKS--PKEK----SPEKADDKPKSP 1634 Query: 463 SSMEPSAVSVENKPSGDTSSAPPKKKK 543 + E S K + + +P KK+K Sbjct: 1635 TKKEKS----PEKSATEDVKSPTKKEK 1657
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +1 Query: 364 KCYECGISGHLSSACPNKKATVISPEE---AKPVGGSSMEPSAVSVE-NKPSGDTSSAPP 531 KC++CG GH++ C N +A + AKP V +E P +T+ P Sbjct: 412 KCFKCGKIGHMAKDCKNGQANFLGYGHWGGAKPRNFVQYRGDTVGLEPTAPPMETAYDPA 471 Query: 532 KK 537 KK Sbjct: 472 KK 473 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/62 (27%), Positives = 23/62 (37%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C+ CG GH+ C AP I C++CG GH++ C N Sbjct: 392 CFNCGKFGHMQREC---KAPRQI-------------------KCFKCGKIGHMAKDCKNG 429 Query: 241 SA 246 A Sbjct: 430 QA 431
>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 622 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 361 RKCYECGISGHLSSACP 411 +KCY CG GHL +CP Sbjct: 590 KKCYNCGQIGHLKRSCP 606 Score = 29.6 bits (65), Expect = 6.9 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +1 Query: 55 RTCYECGVPGHLSSACPNKSAPEVI 129 + CY CG GHL +CP + +I Sbjct: 590 KKCYNCGQIGHLKRSCPGLNKQNII 614 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = +1 Query: 184 RTCYECGIPGHLSSACPNKSAPEVVS 261 + CY CG GHL +CP + +++ Sbjct: 590 KKCYNCGQIGHLKRSCPGLNKQNIIN 615
>ATX1_RAT (Q63540) Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog)| Length = 789 Score = 30.4 bits (67), Expect = 4.1 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 15/161 (9%) Frame = +1 Query: 103 PNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFD 282 PN S P ++ +A A+ ++ ++ G PGH S A + + + ++P Sbjct: 360 PNSSTPSADLETQQATHREASPSTLNDKSGLHLGKPGHRSYALSPHTVIQTTHSASEPLP 419 Query: 283 ------------EPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKAT 426 +P Y++S+Q I Y G+ HL P + Sbjct: 420 VGLPATAFYAGAQPPVIGYLSSQQQAI-------------TYAGGLPQHL--VIPGTQPL 464 Query: 427 VI---SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKK 540 +I SP+ P S++ S+ P ++A PK + Sbjct: 465 LIPVGSPDMDTPGAASAIVTSSPQFAAVPHTFVTTALPKSE 505
>ZFP37_RAT (O88553) Zinc finger protein 37 (Zfp-37)| Length = 601 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = +1 Query: 223 SACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGIS 387 S C + S + +P++ + ++ +Q +D T A + +CYECGI+ Sbjct: 239 SPCRSPSKSDKAPGSGKPYECNQCGKVLSHKQGLLDHQRTHAGEEPYECYECGIA 293
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 508 GDTSSAPPKKKKRRTCYECGIAGHLSSEC 594 G ++ + KK +CY CG GH + +C Sbjct: 893 GSSNGSSHKKSGNLSCYNCGATGHRAQDC 921
>OSTM1_MOUSE (Q8BGT0) Osteopetrosis-associated transmembrane protein 1 precursor| (Gray-lethal protein) Length = 338 Score = 30.4 bits (67), Expect = 4.1 Identities = 19/76 (25%), Positives = 31/76 (40%) Frame = +1 Query: 148 NTESATTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKI 327 NTE + K C+E + GH S P K+ EV N + + K + S+ K+ Sbjct: 189 NTEDFLSLFNKTLACFEHNLQGHTYSLLPPKNYSEVCRNCKEAY---KNLSLLYSQMQKL 245 Query: 328 DDGSTSAPSKRRKCYE 375 + A + C + Sbjct: 246 NGLENKAEPETHLCID 261
>ZN581_HUMAN (Q9P0T4) Zinc finger protein 581| Length = 197 Score = 30.4 bits (67), Expect = 4.1 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Frame = +1 Query: 163 TTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPY--MASEQNKIDDG 336 T RRTC PG SS +++ NH D + PY + E+++ + G Sbjct: 19 TMEGPPRRTC-RSPEPGPSSSIGSPQASSPPRPNHYLLIDT-QGVPYTVLVDEESQREPG 76 Query: 337 STSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKP 453 ++ AP ++ KCY C + + + I+ E KP Sbjct: 77 ASGAPGQK-KCYSCPVCSRVFEYMSYLQRHSITHSEVKP 114
>ZN569_MOUSE (Q80W31) Zinc finger protein 569 (Zinc finger protein 74) (Zfp-74)| (Mszf21) Length = 679 Score = 30.4 bits (67), Expect = 4.1 Identities = 39/173 (22%), Positives = 56/173 (32%), Gaps = 2/173 (1%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 C++CG S E +++ +K ++ R CYEC G N Sbjct: 209 CHQCG---------KGFSHKEKLINHHKLHS---------REQCYECSECGKTFIKMSNL 250 Query: 241 SAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECG--ISGHLSSACPN 414 + + +P+ + + N ID K KC ECG S S Sbjct: 251 IRHQRIHTGEKPYVCQECGKSFGQKSNLIDHEKIHTGEKPYKCNECGKSFSQKQSLVAHQ 310 Query: 415 KKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIA 573 K T P G + P S+ G T P K C +CG A Sbjct: 311 KVHTGEKPYACNECGKAF--PRVASLALHMRGHTREKPYK------CDKCGKA 355
>THOC2_HUMAN (Q8NI27) THO complex subunit 2 (Tho2)| Length = 1478 Score = 30.4 bits (67), Expect = 4.1 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 7/109 (6%) Frame = +1 Query: 241 SAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSA----C 408 S P + + +DE K + + +Q+K+ TS +E +S H+S Sbjct: 703 SRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDIS 762 Query: 409 PNKKATVISP---EEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 546 P AT S + A P E + + V+ K D PP KKK+ Sbjct: 763 PQFYATFWSLTMYDLAVPHTSYEREVNKLKVQMKAIDDNQEMPPNKKKK 811
>SGO1_CAEBR (Q60ZS1) Shugoshin| Length = 306 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +1 Query: 436 PEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 537 PEEA P G P ++ P G APP+K Sbjct: 207 PEEAAPAVGYKRAPLLIAPSETPGGPPKKAPPRK 240
>ZNF43_HUMAN (P17038) Zinc finger protein 43 (Zinc protein HTF6) (Zinc finger| protein KOX27) Length = 803 Score = 30.4 bits (67), Expect = 4.1 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 2/111 (1%) Frame = +1 Query: 175 KKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPS 354 +K C ECG LSS S +++ +P+ K N I+ Sbjct: 669 EKPYKCEECGKAFKLSSTL---STHKIIHTGEKPYKCEKCGKAFNRPSNLIEHKKIHTGE 725 Query: 355 KRRKCYECGISGHLSSACPNKKA--TVISPEEAKPVGGSSMEPSAVSVENK 501 + KC ECG + + SS K T P + K G + + S ++ NK Sbjct: 726 QPYKCEECGKAFNYSSHLNTHKRIHTKEQPYKCKECGKAFNQYSNLTTHNK 776
>MES4_CAEEL (Q9NH52) Probable histone methyltransferase mes-4 (Maternal-effect| sterile protein 4) Length = 898 Score = 30.4 bits (67), Expect = 4.1 Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 14/172 (8%) Frame = +1 Query: 67 ECGVPGHLSSACPNK-SAPEVIVDENKANTESATTASK----KRRTCYECGIPGHLSSAC 231 ECG + + K PEV KA ++ ++ K + R E G G S Sbjct: 676 ECGAENCMGTMGKAKREKPEVADSSEKAAKKNKSSKKKSVKNQNRKSQEAGKNGTASKKS 735 Query: 232 ---PNK------SAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGI 384 P+K S+ V + P + K S Q D GST + S +E Sbjct: 736 EISPSKPSTSSASSTSFVQQASWPISQNKKNLKKNSNQPVADTGSTLSTSTELNFHE--- 792 Query: 385 SGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKK 540 K ++SP ++ SS P A +++ S APP K+ Sbjct: 793 ----------KPQELLSPVSSRSRAASSSTPRAQKSKSRRDDVESEAPPVKR 834
>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (Protein kinase C substrate, 80 kDa protein, light chain) (PKCSL) (80K-L protein) Length = 331 Score = 30.4 bits (67), Expect = 4.1 Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Frame = +1 Query: 154 ESATTASKKRRTCYECG---IPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNK 324 E+A +S + E G + G S A A E + + AP E+ Sbjct: 20 EAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQANGS-------APAADKEEPA 72 Query: 325 IDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSME---PSAVSVE 495 ++PS K + + A P +K E A+P ++ E SA S Sbjct: 73 AAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASST 132 Query: 496 NKPSGDTSSAP------PKKKKRRTCYE 561 + P + + P PKKKK+R ++ Sbjct: 133 SSPKAEDGATPSPSNETPKKKKKRFSFK 160
>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.4 bits (67), Expect = 4.1 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 420 G+ P K KC+ CG GH++ C P KK Sbjct: 381 GNFKGPRKIIKCFNCGKEGHIAKNCRAPRKK 411
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 25.0 bits (53), Expect(2) = 4.9 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = +1 Query: 364 KCYECGISGHLSSAC--PNKK 420 KC+ CG GH + C P KK Sbjct: 390 KCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 4.9 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = +1 Query: 541 KRRTCYECGIAGHLSSEC 594 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = +1 Query: 58 TCYECGVPGHLSSACPNKSAP-EVIVDENKANTESATTASKKRRTCYECGIPGHLSSACP 234 +C++CG PGH++ C + + +CY CG GH + C Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCT 196 Query: 235 NKSA 246 + A Sbjct: 197 SGGA 200
>RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein ligase E3 rad-18| (EC 6.-.-.-) (UV radiation sensitivity protein 2) Length = 501 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Frame = +1 Query: 268 TQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEA 447 T P +P Y DDG + P + E + HL ++CP SP+ A Sbjct: 169 TTPSADPDYV------DQPPDDGLVACPICLTRMKEQQVDRHLDTSCPG------SPQAA 216 Query: 448 ---KPVGGSSMEPSAV-SVENKPSGDTSSAPPKK 537 +P+ + +PS S + + T+ PP++ Sbjct: 217 SKRRPIPAQTPQPSTFPSFNTRLTSQTNQKPPER 250
>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 501 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/69 (20%), Positives = 25/69 (36%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C+ CG GH Sbjct: 386 NQRKTVKCFNCGKEGHIAKNC----------------------RAPRKKGCWRCGREGHQ 423 Query: 220 SSACPNKSA 246 C + A Sbjct: 424 MKDCTERQA 432
>ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10| Length = 173 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Frame = +1 Query: 307 ASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAV 486 +S+ + + S S S + G LSS+ + + S + SS S+ Sbjct: 91 SSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSSSSSSSSSSSDSDSSS 150 Query: 487 SVENKPSGDTSS--APPKKKKRR 549 S + S ++SS PPKK+K++ Sbjct: 151 SSSSSSSSESSSDDEPPKKRKKK 173
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 30.0 bits (66), Expect = 5.3 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG +GH S ECP Sbjct: 170 CYRCGRSGHWSKECP 184 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 364 KCYECGISGHLSSACP 411 +CY CG SGH S CP Sbjct: 169 QCYRCGRSGHWSKECP 184
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 441 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/60 (25%), Positives = 20/60 (33%) Frame = +1 Query: 61 CYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHLSSACPNK 240 CY CG PGH + C ++ C+ CG GH+ C K Sbjct: 381 CYNCGKPGHQARQC------------------------RQGIICHNCGKRGHMQKECRGK 416
>COAT_CAMVE (Q02951) Coat protein| Length = 488 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 PK KK C+ I GH ++ECPN Sbjct: 405 PKGKKDCRCWISNIEGHYANECPN 428 Score = 29.3 bits (64), Expect = 9.1 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +1 Query: 136 ENKANTESATTASKKRRTCYECGIPGHLSSACPNKSAPE 252 E K + + KK C+ I GH ++ CPN+ + E Sbjct: 395 EKKGSKQKYCPKGKKDCRCWISNIEGHYANECPNRQSSE 433
>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (CHCACHA1D) Length = 2190 Score = 30.0 bits (66), Expect = 5.3 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Frame = +1 Query: 271 QPFDEPKYAPYMASEQNKID-DGST-----SAPSKRRKCYECGISGHLSSACPNKKATVI 432 QP P+ A Y +S + + DG T SAPSK+ + +A K A + Sbjct: 8 QPEQHPEEANYASSTRIPLPGDGPTTQSNSSAPSKQTVL---SWQAAIDAARQAKAAQNM 64 Query: 433 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 537 + A+PVG S ++K G+TS++ P + Sbjct: 65 NTTTAQPVGSLSQRKRQQYAKSKKQGNTSNSRPPR 99
>PO3F1_RAT (P20267) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) (Tst-1) Length = 451 Score = 30.0 bits (66), Expect = 5.3 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 3/112 (2%) Frame = +1 Query: 157 SATTASKKRRTCYECGIPGHLSS---ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKI 327 +A +K+RT E G+ G L S CP SA E+ A + E+ + Sbjct: 334 AAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITG----------LADSLQLEKEVV 383 Query: 328 DDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA 483 + K ++ +GH V +P E P GGS+ PSA Sbjct: 384 RVWFCNRRQKEKRMTPAAGAGH------PPMDDVYAPGELGPGGGSASPPSA 429
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III| Length = 2186 Score = 30.0 bits (66), Expect = 5.3 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 10/144 (6%) Frame = +1 Query: 106 NKSAPEVIVDENKANTESATTASKKRR------TCYECGIPGHLSSACPNKSAPEVVSNH 267 N S +N + +S T S ++ C +C G C KS N Sbjct: 511 NNSQNNSAASQNISREQSWKTISVPQKHQNPSDRCSDCQQRGWHMFWCSKKSK----DNA 566 Query: 268 TQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPE-- 441 +Q DE + + + + K+ K R C+ C GH++ CP K E Sbjct: 567 SQKCDECQQSGWHMASCFKL---------KNRACFRCNEMGHIAWNCPKKNENTSEKEAP 617 Query: 442 --EAKPVGGSSMEPSAVSVENKPS 507 + + + G M+ + V+++ S Sbjct: 618 VAKVETIEGVRMKDCLLMVKSEKS 641
>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC| 2.7.11.1) (TFIIF-alpha) (Transcription initiation factor RAP74) (General transcription factor IIF polypeptide 1 74 kDa subunit protein) Length = 517 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/81 (30%), Positives = 31/81 (38%) Frame = +1 Query: 280 DEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVG 459 +E K AP ++ + D S S+ E I SSA K E KP G Sbjct: 324 EEEKKAPTPQEKKRRKDSSEESDSSE-----ESDIDSEASSALFMAKKKTPPKRERKPSG 378 Query: 460 GSSMEPSAVSVENKPSGDTSS 522 GSS S + G TSS Sbjct: 379 GSSRGNSRPGTPSAEGGSTSS 399
>PO3F1_MOUSE (P21952) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) Length = 449 Score = 30.0 bits (66), Expect = 5.3 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 3/112 (2%) Frame = +1 Query: 157 SATTASKKRRTCYECGIPGHLSS---ACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKI 327 +A +K+RT E G+ G L S CP SA E+ A + E+ + Sbjct: 332 AAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITG----------LADSLQLEKEVV 381 Query: 328 DDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA 483 + K ++ +GH V +P E P GGS+ PSA Sbjct: 382 RVWFCNRRQKEKRMTPAAGAGH------PPMDDVYAPGELGPGGGSASPPSA 427
>ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)| Length = 723 Score = 30.0 bits (66), Expect = 5.3 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = +1 Query: 265 HTQPFDEPKYAPYMASE----QNKIDDGSTSAPSKR----RKCYECGISGHLSSACPNKK 420 HT+P +PK+ S+ + + S PS++ + + ISG SA P Sbjct: 60 HTEPKSQPKHPSDTRSKHAPKEKAVSKSSEQPPSEKSTKPKTKSQDEISGGGKSAVP-AV 118 Query: 421 ATVISPEEAKPVGGSSMEPSAVSVENKPS 507 A S E A S + SAV VE+KPS Sbjct: 119 AAAASAEPADKNKESKLLTSAVPVESKPS 147
>GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 496 Score = 30.0 bits (66), Expect = 5.3 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = +1 Query: 334 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 420 G+ P K KC+ CG GH + C P KK Sbjct: 378 GNFKGPRKSIKCFNCGKEGHTAKNCRAPRKK 408
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 2/83 (2%) Frame = +1 Query: 349 PSKRRKCYECGISGHLSSACPNKKATVISPEEA--KPVGGSSMEPSAVSVENKPSGDTSS 522 P R C +C C N + SPE+ KPV G V V N T Sbjct: 2232 PFVYRACVDC------ERTCDNYEQLQTSPEKCTNKPVEGCFCPEGKVRVNN-----TCI 2280 Query: 523 APPKKKKRRTCYECGIAGHLSSE 591 P K C+ CG+ GH + + Sbjct: 2281 EPGK------CFPCGVDGHYAGD 2297
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/69 (21%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GHL+ C + +++ C++CG GH Sbjct: 384 NQRKIIKCFNCGKEGHLARNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSA 246 C + A Sbjct: 422 MKDCNERQA 430
>ZN323_HUMAN (Q96LW9) Zinc finger protein 323| Length = 406 Score = 29.6 bits (65), Expect = 6.9 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 7/139 (5%) Frame = +1 Query: 13 KANNDSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTC 192 KA ++ ++R C ECG SS V+++ + +T +K C Sbjct: 225 KAEKQQAHSTGERRHRCNECGKSFTKSS---------VLIEHQRIHT------GEKPYEC 269 Query: 193 YECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRR--- 363 ECG A +S+ ++ H + K PY E K S RR Sbjct: 270 EECG------KAFSRRSS---LNEHRRSHTGEK--PYQCKECGKAFSASNGLTRHRRIHT 318 Query: 364 --KCYECGISG--HLSSAC 408 K YEC + G L S+C Sbjct: 319 GEKPYECKVCGKAFLLSSC 337
>ZN539_HUMAN (Q86XL7) Zinc finger protein 539| Length = 659 Score = 29.6 bits (65), Expect = 6.9 Identities = 40/160 (25%), Positives = 55/160 (34%), Gaps = 7/160 (4%) Frame = +1 Query: 130 VDENKANTESA-------TTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEP 288 VDE K N E TTA K ++C + N + P++ + F Sbjct: 129 VDEYKVNKEGYNGLNQCFTTAQSK---VFQCDKYLKVFYKFLNSNRPKIRHTEKKSFKCK 185 Query: 289 KYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSS 468 K +K S K KC ECG + + SS N + E KP Sbjct: 186 KRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIY---TEEKPYKCEE 242 Query: 469 MEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSS 588 S + + + A K K C ECG A + SS Sbjct: 243 YNKSPKQLSTLTTHEIIHAGEKLYK---CEECGEAFNRSS 279
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 18/127 (14%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 384 NQRKIVKCFNCGKEGHIARNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSAPEV----------VSNHTQPFDEPKYAPYMAS--------EQNKIDDGSTS 345 C + A + N Q EP P++ S E++ T+ Sbjct: 422 MKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPTAPPEESFRSGVETT 481 Query: 346 APSKRRK 366 PS++++ Sbjct: 482 TPSQKQE 488
>ZFP37_MOUSE (P17141) Zinc finger protein 37 (Zfp-37) (Male germ cell-specific| zinc finger protein) Length = 594 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/55 (27%), Positives = 24/55 (43%) Frame = +1 Query: 223 SACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGIS 387 S C S PE +P++ ++ +Q +D T K +C ECGI+ Sbjct: 237 SHCRTPSKPEKAPGSGKPYECNHCGKVLSHKQGLLDHQRTHTGEKPYECNECGIA 291
>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5| Length = 475 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Frame = +1 Query: 442 EAKPVGGSSME----PSAVSVENKPSGDTSSAPPKKK-------KRRTCYECGIAGHLSS 588 + P+G SS P + EN+P + P + K R C CG GH + Sbjct: 397 DPNPLGKSSSAEGDGPESPPAENQPMQAAINCPHISEAEWVRWHKGRLCLYCGYPGHFAR 456 Query: 589 ECP 597 +CP Sbjct: 457 DCP 459 Score = 29.3 bits (64), Expect = 9.1 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +1 Query: 178 KRRTCYECGIPGHLSSACPNK 240 K R C CG PGH + CP K Sbjct: 441 KGRLCLYCGYPGHFARDCPVK 461 Score = 29.3 bits (64), Expect = 9.1 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +1 Query: 49 KRRTCYECGVPGHLSSACPNK 111 K R C CG PGH + CP K Sbjct: 441 KGRLCLYCGYPGHFARDCPVK 461
>ZN254_HUMAN (O75437) Zinc finger protein 254 (Bone marrow zinc finger 5)| (BMZF-5) (Hematopoietic cell-derived zinc finger protein 1) (HD-ZNF1) Length = 353 Score = 29.6 bits (65), Expect = 6.9 Identities = 40/160 (25%), Positives = 55/160 (34%), Gaps = 7/160 (4%) Frame = +1 Query: 130 VDENKANTESA-------TTASKKRRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEP 288 VDE K N E TTA K ++C + N + P++ + F Sbjct: 129 VDEYKVNKEGYNGLNQCFTTAQSK---VFQCDKYLKVFYKFLNSNRPKIRHTEKKSFKCK 185 Query: 289 KYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSS 468 K +K S K KC ECG + + SS N + E KP Sbjct: 186 KRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTNHRKIY---TEEKPYKCEE 242 Query: 469 MEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSS 588 S + + + A K K C ECG A + SS Sbjct: 243 YNKSPKQLSTLTTHEIIHAGEKLYK---CEECGKAFNRSS 279
>NO40_HUMAN (Q9NP64) Nucleolar protein of 40 kDa (pNO40) (Zinc finger CCHC| domain-containing protein 7) (Putative S1 RNA binding domain protein) (PS1D protein) (Pnn-interacting nucleolar protein) Length = 241 Score = 29.6 bits (65), Expect = 6.9 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 3/124 (2%) Frame = +1 Query: 187 TCYECGIPGHLSSAC---PNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSK 357 TC +CG GH + C P + ++ + + +E K A + + T PS+ Sbjct: 132 TCKKCGCKGHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPD-------PTRNPSR 184 Query: 358 RRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 537 +RK KK ++ S E S D+ +A KK Sbjct: 185 KRK--------------KEKKKKKHRDRKSSDSDSSDSESDTGKRARHTSKDSKAAKKKK 230 Query: 538 KKRR 549 KK++ Sbjct: 231 KKKK 234
>ZN560_HUMAN (Q96MR9) Zinc finger protein 560| Length = 790 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/67 (22%), Positives = 28/67 (41%) Frame = +1 Query: 181 RRTCYECGIPGHLSSACPNKSAPEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKR 360 R ++C G + P+ V N +P++ +Y + I+D ++ KR Sbjct: 428 REKTFKCDHCGKAFISYPSLFGHLRVHNGEKPYEHKEYGKAFGTSSGVIEDRRSNTGQKR 487 Query: 361 RKCYECG 381 C +CG Sbjct: 488 FDCDQCG 494
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/73 (26%), Positives = 29/73 (39%) Frame = +1 Query: 25 DSVPTSSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECG 204 D + +K R C++CG GH + C D + N E SK C C Sbjct: 533 DLLNNKNKDRGGCFKCGKKGHFAKDCR---------DHSNKNPE-----SKVPGLCPRCK 578 Query: 205 IPGHLSSACPNKS 243 H ++ C +K+ Sbjct: 579 RGKHWANECKSKT 591
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/69 (20%), Positives = 26/69 (37%) Frame = +1 Query: 40 SSKKRRTCYECGVPGHLSSACPNKSAPEVIVDENKANTESATTASKKRRTCYECGIPGHL 219 + +K C+ CG GH++ C + +++ C++CG GH Sbjct: 384 NQRKIVKCFNCGKEGHIARNC----------------------RAPRKKGCWKCGKEGHQ 421 Query: 220 SSACPNKSA 246 C + A Sbjct: 422 MKDCTERQA 430
>TFF1_HUMAN (P04155) Trefoil factor 1 precursor (pS2 protein) (HP1.A) (Breast| cancer estrogen-inducible protein) (PNR-2) Length = 84 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 142 KANTESATTASKKRRTCYECGIPGHLSSACPNK 240 +A TE+ T A ++R+ C G PG S C NK Sbjct: 25 EAQTETCTVAPRERQNC---GFPGVTPSQCANK 54
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 553 CYECGIAGHLSSECP 597 CY CG GH S ECP Sbjct: 162 CYRCGKEGHWSKECP 176
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC| 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 1886 Score = 29.3 bits (64), Expect = 9.1 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = +1 Query: 340 TSAPSKRR-KCYECGISGHLSSACPNK 417 T A +R+ KCY CG GH ++ C NK Sbjct: 871 TKAKYQRKCKCYICGQEGHYANQCRNK 897
>NUPL2_CHICK (Q5ZI22) Nucleoporin-like 2| Length = 413 Score = 29.3 bits (64), Expect = 9.1 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Frame = +1 Query: 310 SEQNKIDDGSTSAPSKRR----------KCYECGISGHLSSACPNKKATVISPEEAKPVG 459 S N + G++SAPS C G+SG SSA N +T P A P Sbjct: 276 SVPNPVGSGNSSAPSAASFSFKTSGTTSGCGTSGLSGFGSSAAANSSSTAPLPVSATPSA 335 Query: 460 GSSMEPSAVS 489 + S S Sbjct: 336 ATGTSQSGAS 345
>ZN184_HUMAN (Q99676) Zinc finger protein 184| Length = 751 Score = 29.3 bits (64), Expect = 9.1 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +1 Query: 409 PNKKATVISPEEAKPVGGSS----MEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIA 573 P+ + ++ E K V SS EPS K S +S P KK+K C ECG A Sbjct: 172 PSWEKGPVNNEFGKSVNVSSNLVTQEPSPEETSTKRSIKQNSNPVKKEKSCKCNECGKA 230
>COAT_FMVD (P09519) Probable coat protein| Length = 489 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 529 PKKKKRRTCYECGIAGHLSSECPN 600 P+ +K+ C+ C GH ++ECPN Sbjct: 403 PQGRKKCRCWICTEEGHYANECPN 426
>NFAC1_MOUSE (O88942) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) Length = 717 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Frame = +1 Query: 217 LSSACPNKSAPEVVSNHTQPFDEPKYAPYMA-SEQNKIDDGSTSAPSKRRKCYECGISGH 393 LSS N A SN++ P+ P+ +P+ + K D P C+ G H Sbjct: 179 LSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFPRSLGACHLLGSPRH 238 Query: 394 LSSACPNKKAT 426 S P T Sbjct: 239 SPSTSPRASIT 249
>RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like protein 1)| (pNd13/pNd14) Length = 885 Score = 29.3 bits (64), Expect = 9.1 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 12/62 (19%) Frame = -1 Query: 412 WGKLMRDDRRCHIHNISSALKV------------LKLIHRLFYSAQKPCKVHTSVHQKAV 269 W + ++ R IHN+ K LK+I + S + CKV + H K V Sbjct: 239 WDEKNKNQRALDIHNVLRRKKFVLLLDDIWEKVELKVIGVPYPSGENGCKVAFTTHSKEV 298 Query: 268 CG 263 CG Sbjct: 299 CG 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.307 0.124 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,277,751 Number of Sequences: 219361 Number of extensions: 1899658 Number of successful extensions: 6260 Number of sequences better than 10.0: 213 Number of HSP's better than 10.0 without gapping: 4365 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5743 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
