ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4l10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463993.1| Oryza sativa (japonica cultivar-group), mRNA 392 e-106
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
3dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
4dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
5ref|NM_121773.2| Arabidopsis thaliana unknown protein AT5G17670 ... 52 0.002
6gb|AY128812.1| Arabidopsis thaliana unknown protein (At5g17670) ... 52 0.002
7gb|AY062761.1| Arabidopsis thaliana Unknown protein (MVA3.2) mRN... 52 0.002
8emb|BX833227.1|CNS09YZR Arabidopsis thaliana Full-length cDNA Co... 52 0.002
9emb|BX833152.1|CNS09Z5H Arabidopsis thaliana Full-length cDNA Co... 52 0.002
10emb|BX830541.1|CNS09YO1 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
11emb|BX841744.1|CNS09YK8 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
12dbj|AB006706.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
13gb|AE017127.1| Yersinia pestis biovar Medievalis str. 91001 sect... 46 0.13
14gb|AE009952.1| Yersinia pestis KIM, complete genome 46 0.13
15emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 46 0.13
16emb|AJ414141.1| Yersinia pestis strain CO92 complete genome; seg... 46 0.13
17gb|AF046060.1|AF046060 Mus musculus cytokine receptor related pr... 44 0.53
18ref|NM_018776.1| Mus musculus cytokine receptor-like factor 3 (C... 44 0.53
19gb|BC060618.1| Mus musculus RAB6B, member RAS oncogene family, m... 42 2.1
20gb|BC059903.1| Mus musculus RAB6B, member RAS oncogene family, m... 42 2.1
21gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome... 42 2.1
22gb|AC132910.8| Mus musculus chromosome 17, clone RP24-301I14, co... 42 2.1
23emb|AJ438039.1|RLE438039 Rhizobium leguminosarum bv. phaseoli pa... 42 2.1
24emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chr... 42 2.1
25gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 42 2.1
26gb|AC094080.4| Homo sapiens chromosome 5 clone CTB-77K22, comple... 42 2.1
27gb|AC010292.8| Homo sapiens chromosome 5 clone CTB-131H22, compl... 42 2.1
28gb|AC156633.2| Mus musculus BAC clone RP24-421P3 from chromosome... 42 2.1
29dbj|AK035893.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 42 2.1
30gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell P... 42 2.1
31dbj|AK082732.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 42 2.1
32dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 2.1
33gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, comple... 42 2.1
34ref|NM_173781.3| Mus musculus RAB6B, member RAS oncogene family ... 42 2.1
35gb|AE017135.1| Yersinia pestis biovar Medievalis str. 91001 sect... 40 8.2
36ref|XM_643547.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 8.2
37ref|NM_001039812.1| Danio rerio bone morphogenetic protein 1b (b... 40 8.2
38emb|AL138721.16| Human DNA sequence from clone RP11-174N3 on chr... 40 8.2
39emb|AJ414152.1| Yersinia pestis strain CO92 complete genome; seg... 40 8.2
40dbj|AB239772.1| Danio rerio bmp1b mRNA for bone morphogenetic pr... 40 8.2
41gb|AF079973.1|AF079973 Yersinia pseudotuberculosis luxR homolog ... 40 8.2
42gb|AF071401.1|AF071401 Yersinia pestis transcriptional activator... 40 8.2
43gb|AC107768.25| Mus musculus chromosome 18, clone RP23-144B22, c... 40 8.2
44emb|AL672271.9| Mouse DNA sequence from clone RP23-450H23 on chr... 40 8.2
45emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chro... 40 8.2 
>ref|XM_463993.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 903

 Score =  392 bits (198), Expect = e-106
 Identities = 469/556 (84%), Gaps = 5/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  ttgatagggcattcagctgggggctggctcgcgcgcgtgtacatggaggaattcgggact 106
           ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |   ||
Sbjct: 322 ttgatagggcattcagctgggggctggctggcgcgtgtgtacatggaagaatttgatgct 381

                                                                       
Query: 107 tctgacataagtttactgctcacgcttggcactccccacctgccacctcccaaaggtgtt 166
           || |||||||||||||||||||| ||||||||||| ||| | |||||||| ||||||  |
Sbjct: 382 tcagacataagtttactgctcacacttggcactcctcacttaccacctccaaaaggtact 441

                                                                       
Query: 167 tctggcgtaattgaccaaactagaggactactgaactacgtcgagaagaattgtgcccct 226
            |||| |||||||||||||||||||||||||||| ||| || ||||||||||||||||| 
Sbjct: 442 cctggggtaattgaccaaactagaggactactgacctatgttgagaagaattgtgcccca 501

                                                                       
Query: 227 gcagtttacacaccagaactacgatatgtatgcattgctggaaggtatattcagggtgct 286
           ||||||||||| |||||||||  |||||| ||||||||||||||||| ||||| ||||||
Sbjct: 502 gcagtttacactccagaactaaaatatgtgtgcattgctggaaggtacattcaaggtgct 561

                                                                       
Query: 287 cctttaactggaagctcccttgctgctaccacagatgagcttgtcgccgtggatgccccg 346
           ||||||||||| | | || |    ||||| ||||||||  || |||| |||||| | || 
Sbjct: 562 cctttaactgggaacaccat---cgctactacagatgatattctcgctgtggatactcca 618

                                                                       
Query: 347 tcagaagtagctgaagcagtcatggtcagtgccgataacaaaaccgctccgacaggcccc 406
           |||||  ||||||||||||||||||||||| || |  ||||| |  |||   ||||||| 
Sbjct: 619 tcagatatagctgaagcagtcatggtcagtaccaacgacaaatctactcaatcaggccca 678

                                                                       
Query: 407 accttccgggcccgtttcgtcggacaaggctacaaacaggtttgcggccgcgccgacgtc 466
           |||||  | ||||| ||| | |||||||||||||| ||||| || ||||| || || || 
Sbjct: 679 accttgagagcccgcttcattggacaaggctacaagcaggtctgtggccgtgctgatgtg 738

                                                                       
Query: 467 tggggagatgggggtcgtcccccgaagtgtcagcgcatctggagggcgcactgaatataa 526
           ||||||||  || |||||  ||||| ||||| |||||||| || ||||||||||| ||||
Sbjct: 739 tggggaga-cggcgtcgt-tcccgaggtgtcggcgcatctagaaggcgcactgaacataa 796

                                                                       
Query: 527 gcttcgacggcgtgtaccattctcctgtaggttctgatgatgaagagaggccctggtatg 586
           ||||||||||||||||||| ||||||||||||||||| |||||  ||||||| |||||||
Sbjct: 797 gcttcgacggcgtgtaccactctcctgtaggttctgacgatgagcagaggccgtggtatg 856

                           
Query: 587 gctcaccagcgatcct 602
           | ||||| || |||||
Sbjct: 857 gttcaccggcaatcct 872
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 2e-31
 Identities = 112/125 (89%)
 Strand = Plus / Plus

                                                                           
Query: 149     ccacctcccaaaggtgtttctggcgtaattgaccaaactagaggactactgaactacgtc 208
               |||||||| ||||||  | |||| |||||||||||||||||||||||||||| ||| || 
Sbjct: 1562074 ccacctccaaaaggtactcctggggtaattgaccaaactagaggactactgacctatgtt 1562133

                                                                           
Query: 209     gagaagaattgtgcccctgcagtttacacaccagaactacgatatgtatgcattgctgga 268
               ||||||||||||||||| ||||||||||| |||||||||  |||||| ||||||||||||
Sbjct: 1562134 gagaagaattgtgccccagcagtttacactccagaactaaaatatgtgtgcattgctgga 1562193

                    
Query: 269     aggta 273
               |||||
Sbjct: 1562194 aggta 1562198



 Score =  127 bits (64), Expect = 5e-26
 Identities = 103/116 (88%)
 Strand = Plus / Plus

                                                                           
Query: 487     cccgaagtgtcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccat 546
               ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||||||| 
Sbjct: 1562854 cccgaggtgtcggcgcatctagaaggcgcactgaacataagcttcgacggcgtgtaccac 1562913

                                                                       
Query: 547     tctcctgtaggttctgatgatgaagagaggccctggtatggctcaccagcgatcct 602
               ||||||||||||||||| |||||  ||||||| |||||||| ||||| || |||||
Sbjct: 1562914 tctcctgtaggttctgacgatgagcagaggccgtggtatggttcaccggcaatcct 1562969



 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                           
Query: 47      ttgatagggcattcagctgggggctggctcgcgcgcgtgtacatggaggaattcgggact 106
               ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |   ||
Sbjct: 1561687 ttgatagggcattcagctgggggctggctggcgcgtgtgtacatggaagaatttgatgct 1561746

                                                  
Query: 107     tctgacataagtttactgctcacgcttggcactcc 141
               || |||||||||||||||||||| |||||||||||
Sbjct: 1561747 tcagacataagtttactgctcacacttggcactcc 1561781



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 88/108 (81%), Gaps = 3/108 (2%)
 Strand = Plus / Plus

                                                                           
Query: 269     aggtatattcagggtgctcctttaactggaagctcccttgctgctaccacagatgagctt 328
               ||||| ||||| ||||||||||||||||| | | || |    ||||| ||||||||  ||
Sbjct: 1562556 aggtacattcaaggtgctcctttaactgggaacaccat---cgctactacagatgatatt 1562612

                                                               
Query: 329     gtcgccgtggatgccccgtcagaagtagctgaagcagtcatggtcagt 376
                |||| |||||| | || |||||  |||||||||||||||||||||||
Sbjct: 1562613 ctcgctgtggatactccatcagatatagctgaagcagtcatggtcagt 1562660
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0576F08
          Length = 135314

 Score =  145 bits (73), Expect = 2e-31
 Identities = 112/125 (89%)
 Strand = Plus / Plus

                                                                          
Query: 149    ccacctcccaaaggtgtttctggcgtaattgaccaaactagaggactactgaactacgtc 208
              |||||||| ||||||  | |||| |||||||||||||||||||||||||||| ||| || 
Sbjct: 125495 ccacctccaaaaggtactcctggggtaattgaccaaactagaggactactgacctatgtt 125554

                                                                          
Query: 209    gagaagaattgtgcccctgcagtttacacaccagaactacgatatgtatgcattgctgga 268
              ||||||||||||||||| ||||||||||| |||||||||  |||||| ||||||||||||
Sbjct: 125555 gagaagaattgtgccccagcagtttacactccagaactaaaatatgtgtgcattgctgga 125614

                   
Query: 269    aggta 273
              |||||
Sbjct: 125615 aggta 125619



 Score =  127 bits (64), Expect = 5e-26
 Identities = 103/116 (88%)
 Strand = Plus / Plus

                                                                          
Query: 487    cccgaagtgtcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccat 546
              ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||||||| 
Sbjct: 126275 cccgaggtgtcggcgcatctagaaggcgcactgaacataagcttcgacggcgtgtaccac 126334

                                                                      
Query: 547    tctcctgtaggttctgatgatgaagagaggccctggtatggctcaccagcgatcct 602
              ||||||||||||||||| |||||  ||||||| |||||||| ||||| || |||||
Sbjct: 126335 tctcctgtaggttctgacgatgagcagaggccgtggtatggttcaccggcaatcct 126390



 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                          
Query: 47     ttgatagggcattcagctgggggctggctcgcgcgcgtgtacatggaggaattcgggact 106
              ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |   ||
Sbjct: 125108 ttgatagggcattcagctgggggctggctggcgcgtgtgtacatggaagaatttgatgct 125167

                                                 
Query: 107    tctgacataagtttactgctcacgcttggcactcc 141
              || |||||||||||||||||||| |||||||||||
Sbjct: 125168 tcagacataagtttactgctcacacttggcactcc 125202



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 88/108 (81%), Gaps = 3/108 (2%)
 Strand = Plus / Plus

                                                                          
Query: 269    aggtatattcagggtgctcctttaactggaagctcccttgctgctaccacagatgagctt 328
              ||||| ||||| ||||||||||||||||| | | || |    ||||| ||||||||  ||
Sbjct: 125977 aggtacattcaaggtgctcctttaactgggaacaccat---cgctactacagatgatatt 126033

                                                              
Query: 329    gtcgccgtggatgccccgtcagaagtagctgaagcagtcatggtcagt 376
               |||| |||||| | || |||||  |||||||||||||||||||||||
Sbjct: 126034 ctcgctgtggatactccatcagatatagctgaagcagtcatggtcagt 126081
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>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1007_D04
          Length = 125503

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 531 cgacggcgtgtaccattctcctgtaggttctgatgatgaagagaggccctggtatggctc 590
           ||||||||||||||| ||||||||||||||||| |||||  ||||||| |||||||| ||
Sbjct: 1   cgacggcgtgtaccactctcctgtaggttctgacgatgagcagaggccgtggtatggttc 60

                       
Query: 591 accagcgatcct 602
           ||| || |||||
Sbjct: 61  accggcaatcct 72
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>ref|NM_121773.2| Arabidopsis thaliana unknown protein AT5G17670 mRNA, complete cds
          Length = 1088

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 496 tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
           ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 815 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 874

                                                 
Query: 556 ggttctgatgatgaagagaggccctggtatggctcacc 593
           ||||| || ||||||   || || ||||||||||||||
Sbjct: 875 ggttcagacgatgaaaccagaccttggtatggctcacc 912
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>gb|AY128812.1| Arabidopsis thaliana unknown protein (At5g17670) mRNA, complete cds
          Length = 981

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 496 tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
           ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 793 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 852

                                                 
Query: 556 ggttctgatgatgaagagaggccctggtatggctcacc 593
           ||||| || ||||||   || || ||||||||||||||
Sbjct: 853 ggttcagacgatgaaaccagaccttggtatggctcacc 890
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>gb|AY062761.1| Arabidopsis thaliana Unknown protein (MVA3.2) mRNA, complete cds
          Length = 1088

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 496 tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
           ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 815 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 874

                                                 
Query: 556 ggttctgatgatgaagagaggccctggtatggctcacc 593
           ||||| || ||||||   || || ||||||||||||||
Sbjct: 875 ggttcagacgatgaaaccagaccttggtatggctcacc 912
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>emb|BX833227.1|CNS09YZR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL3ZD01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 837

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 496 tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
           ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 592 tcagctcatcttgaaggtgcacttaatcttagcttcgacggtgtttaccattcacctgtt 651

                                                 
Query: 556 ggttctgatgatgaagagaggccctggtatggctcacc 593
           ||||| || ||||||   || || ||||||||||||||
Sbjct: 652 ggttcagacgatgaaaccagaccttggtatggctcacc 689
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>emb|BX833152.1|CNS09Z5H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL36ZF03 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1219

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                        
Query: 496  tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
            ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 1029 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 1088

                                                  
Query: 556  ggttctgatgatgaagagaggccctggtatggctcacc 593
            ||||| || ||||||   || || ||||||||||||||
Sbjct: 1089 ggttcagacgatgaaaccagaccttggtatggctcacc 1126
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>emb|BX830541.1|CNS09YO1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB8ZA05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1235

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                        
Query: 496  tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
            ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 1031 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 1090

                                                  
Query: 556  ggttctgatgatgaagagaggccctggtatggctcacc 593
            ||||| || ||||||   || || ||||||||||||||
Sbjct: 1091 ggttcagacgatgaaaccagaccttggtatggctcacc 1128
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>emb|BX841744.1|CNS09YK8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL70ZD04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1009

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                       
Query: 496 tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
           ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 799 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 858

                                                 
Query: 556 ggttctgatgatgaagagaggccctggtatggctcacc 593
           ||||| || ||||||   || || ||||||||||||||
Sbjct: 859 ggttcagaagatgaaaccagaccttggtatggctcacc 896
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>dbj|AB006706.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVA3
          Length = 81701

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 80/98 (81%)
 Strand = Plus / Plus

                                                                        
Query: 496  tcagcgcatctggagggcgcactgaatataagcttcgacggcgtgtaccattctcctgta 555
            ||||| ||||| || || ||||| ||| | ||||||||||| || |||||||| ||||| 
Sbjct: 4713 tcagctcatcttgaaggtgcacttaatgttagcttcgacggtgtttaccattcacctgtt 4772

                                                  
Query: 556  ggttctgatgatgaagagaggccctggtatggctcacc 593
            ||||| || ||||||   || || ||||||||||||||
Sbjct: 4773 ggttcagacgatgaaaccagaccttggtatggctcacc 4810
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>gb|AE017127.1| Yersinia pestis biovar Medievalis str. 91001 section 1 of 16 of the
              complete genome
          Length = 290029

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 369    tggtcagtgccgataacaaaacc 391
              |||||||||||||||||||||||
Sbjct: 177155 tggtcagtgccgataacaaaacc 177133
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 369     tggtcagtgccgataacaaaacc 391
               |||||||||||||||||||||||
Sbjct: 4399510 tggtcagtgccgataacaaaacc 4399488



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gtttctggcgtaattgacca 183
               ||||||||||||||||||||
Sbjct: 1917302 gtttctggcgtaattgacca 1917321
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 369     tggtcagtgccgataacaaaacc 391
               |||||||||||||||||||||||
Sbjct: 4440049 tggtcagtgccgataacaaaacc 4440071



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 164     gtttctggcgtaattgacca 183
               ||||||||||||||||||||
Sbjct: 2949981 gtttctggcgtaattgacca 2949962
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>emb|AJ414141.1| Yersinia pestis strain CO92 complete genome; segment 1/20
          Length = 288050

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 369    tggtcagtgccgataacaaaacc 391
              |||||||||||||||||||||||
Sbjct: 176453 tggtcagtgccgataacaaaacc 176431
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>gb|AF046060.1|AF046060 Mus musculus cytokine receptor related protein 4 (Cytor4) mRNA,
          complete cds
          Length = 2365

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  cggcacgaggagggagctaggc 23
          ||||||||||||||||||||||
Sbjct: 1  cggcacgaggagggagctaggc 22
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>ref|NM_018776.1| Mus musculus cytokine receptor-like factor 3 (Crlf3), mRNA
          Length = 2365

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  cggcacgaggagggagctaggc 23
          ||||||||||||||||||||||
Sbjct: 1  cggcacgaggagggagctaggc 22
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>gb|BC060618.1| Mus musculus RAB6B, member RAS oncogene family, mRNA (cDNA clone
            MGC:77988 IMAGE:6406134), complete cds
          Length = 4768

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 556  ggttctgatgatgaagagagg 576
            |||||||||||||||||||||
Sbjct: 2294 ggttctgatgatgaagagagg 2314
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>gb|BC059903.1| Mus musculus RAB6B, member RAS oncogene family, mRNA (cDNA clone
            IMAGE:6822839)
          Length = 4339

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 556  ggttctgatgatgaagagagg 576
            |||||||||||||||||||||
Sbjct: 1876 ggttctgatgatgaagagagg 1896
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>gb|AC148324.2| Mus musculus BAC clone RP24-454N4 from chromosome 12, complete sequence
          Length = 183478

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   accaaactagaggactactga 200
             |||||||||||||||||||||
Sbjct: 40036 accaaactagaggactactga 40056
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>gb|AC132910.8| Mus musculus chromosome 17, clone RP24-301I14, complete sequence
          Length = 209975

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 261    ttgctggaaggtatattcagg 281
              |||||||||||||||||||||
Sbjct: 105989 ttgctggaaggtatattcagg 105969
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>emb|AJ438039.1|RLE438039 Rhizobium leguminosarum bv. phaseoli panB (partial), oxyR and katG
            genes
          Length = 4754

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 450  gcggccgcgccgacgtctggg 470
            |||||||||||||||||||||
Sbjct: 2415 gcggccgcgccgacgtctggg 2435
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>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes,
              complete sequence
          Length = 216199

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 289    tttaactggaagctcccttgc 309
              |||||||||||||||||||||
Sbjct: 115999 tttaactggaagctcccttgc 116019
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 450  gcggccgcgccgacgtctggg 470
            |||||||||||||||||||||
Sbjct: 4079 gcggccgcgccgacgtctggg 4099
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>gb|AC094080.4| Homo sapiens chromosome 5 clone CTB-77K22, complete sequence
          Length = 118504

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 136    cactccccacctgccacctcc 156
              |||||||||||||||||||||
Sbjct: 116173 cactccccacctgccacctcc 116193
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>gb|AC010292.8| Homo sapiens chromosome 5 clone CTB-131H22, complete sequence
          Length = 56767

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   cactccccacctgccacctcc 156
             |||||||||||||||||||||
Sbjct: 18493 cactccccacctgccacctcc 18513
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>gb|AC156633.2| Mus musculus BAC clone RP24-421P3 from chromosome 9, complete sequence
          Length = 175422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 556    ggttctgatgatgaagagagg 576
              |||||||||||||||||||||
Sbjct: 118897 ggttctgatgatgaagagagg 118917
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>dbj|AK035893.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630015C03 product:RAS-RELATED
            PROTEIN RAB-6B homolog [Homo sapiens], full insert
            sequence
          Length = 2563

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 556  ggttctgatgatgaagagagg 576
            |||||||||||||||||||||
Sbjct: 2252 ggttctgatgatgaagagagg 2272
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>gb|AC026387.7|AC026387 Mus musculus 11 BAC RP23-476H9 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 204318

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   accaaactagaggactactga 200
             |||||||||||||||||||||
Sbjct: 60102 accaaactagaggactactga 60082
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>dbj|AK082732.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230098J04 product:RAS-RELATED
            PROTEIN RAB-6B homolog [Homo sapiens], full insert
            sequence
          Length = 4858

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 556  ggttctgatgatgaagagagg 576
            |||||||||||||||||||||
Sbjct: 2418 ggttctgatgatgaagagagg 2438
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 450     gcggccgcgccgacgtctggg 470
               |||||||||||||||||||||
Sbjct: 5706182 gcggccgcgccgacgtctggg 5706202
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>gb|AC147218.4| Mus musculus BAC clone RP23-11I13 from 12, complete sequence
          Length = 217668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   accaaactagaggactactga 200
             |||||||||||||||||||||
Sbjct: 28724 accaaactagaggactactga 28704
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>ref|NM_173781.3| Mus musculus RAB6B, member RAS oncogene family (Rab6b), mRNA
          Length = 4768

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 556  ggttctgatgatgaagagagg 576
            |||||||||||||||||||||
Sbjct: 2294 ggttctgatgatgaagagagg 2314
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>gb|AE017135.1| Yersinia pestis biovar Medievalis str. 91001 section 9 of 16 of the
              complete genome
          Length = 291326

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gtttctggcgtaattgacca 183
              ||||||||||||||||||||
Sbjct: 200684 gtttctggcgtaattgacca 200665
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>ref|XM_643547.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (416.t00005)
           partial mRNA
          Length = 2154

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 545 attctcctgtaggttctgatgatg 568
           ||||| ||||||||||||||||||
Sbjct: 808 attcttctgtaggttctgatgatg 785
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>ref|NM_001039812.1| Danio rerio bone morphogenetic protein 1b (bmp1b), mRNA
          Length = 3791

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 aaaggtgtttctggcgtaat 177
           ||||||||||||||||||||
Sbjct: 967 aaaggtgtttctggcgtaat 948
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>emb|AL138721.16| Human DNA sequence from clone RP11-174N3 on chromosome 6 Contains the 3'
              end of gene KIAA0229 for a novel Ank, SAM (Sterile alpha
              motif) and Phosphotyrosine interaction (PTB/PID) domain
              containing protein, the TCP11 gene for t-complex 11 (mouse)
              and two CpG islands, complete sequence
          Length = 155539

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    ccccacctgccacctcccaa 159
              ||||||||||||||||||||
Sbjct: 148120 ccccacctgccacctcccaa 148139
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>emb|AJ414152.1| Yersinia pestis strain CO92 complete genome; segment 12/20
          Length = 313050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gtttctggcgtaattgacca 183
              ||||||||||||||||||||
Sbjct: 154529 gtttctggcgtaattgacca 154510
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>dbj|AB239772.1| Danio rerio bmp1b mRNA for bone morphogenetic protein 1b, complete
           cds
          Length = 3791

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 aaaggtgtttctggcgtaat 177
           ||||||||||||||||||||
Sbjct: 967 aaaggtgtttctggcgtaat 948
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>gb|AF079973.1|AF079973 Yersinia pseudotuberculosis luxR homolog YpsR (ypsR) and
            N-acylhomoserine lactone synthase YpsI (ypsI) genes,
            complete cds
          Length = 4044

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  gtttctggcgtaattgacca 183
            ||||||||||||||||||||
Sbjct: 2528 gtttctggcgtaattgacca 2547
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>gb|AF071401.1|AF071401 Yersinia pestis transcriptional activator YpeR (ypeR) and
           homoserine lactone synthase YpeI (ypeI) genes, complete
           cds
          Length = 1375

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 164 gtttctggcgtaattgacca 183
           ||||||||||||||||||||
Sbjct: 977 gtttctggcgtaattgacca 996
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>gb|AC107768.25| Mus musculus chromosome 18, clone RP23-144B22, complete sequence
          Length = 217847

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 135    gcactccccacctgccacctccca 158
              ||||||||||||| ||||||||||
Sbjct: 143514 gcactccccacctcccacctccca 143491
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>emb|AL672271.9| Mouse DNA sequence from clone RP23-450H23 on chromosome X, complete
              sequence
          Length = 196613

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    tccccacctgccacctccca 158
              ||||||||||||||||||||
Sbjct: 129110 tccccacctgccacctccca 129129
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>emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chromosome X, complete
             sequence
          Length = 194106

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tccccacctgccacctccca 158
             ||||||||||||||||||||
Sbjct: 65095 tccccacctgccacctccca 65076


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,520,590
Number of Sequences: 3902068
Number of extensions: 4520590
Number of successful extensions: 68016
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67860
Number of HSP's gapped (non-prelim): 156
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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