Clone Name | baak4l09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 39 agaagaagatggatgccaggaagaagagcctgaagag 75 |||||||||| ||||| |||||||||||| ||||||| Sbjct: 26839076 agaagaagattgatgcgaggaagaagagcttgaagag 26839112
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 39 agaagaagatggatgccaggaagaagagcctgaagag 75 |||||||||| ||||| |||||||||||| ||||||| Sbjct: 93702 agaagaagattgatgcgaggaagaagagcttgaagag 93738
>dbj|AK121998.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110E10, full insert sequence Length = 1343 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 39 agaagaagatggatgccaggaagaagagcctgaagag 75 |||||||||| ||||| |||||||||||| ||||||| Sbjct: 1092 agaagaagattgatgcgaggaagaagagcttgaagag 1128
>dbj|AK058614.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B01, full insert sequence Length = 1380 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 39 agaagaagatggatgccaggaagaagagcctgaagag 75 |||||||||| ||||| |||||||||||| ||||||| Sbjct: 1129 agaagaagattgatgcgaggaagaagagcttgaagag 1165
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 tgccaggaagaagagcctgaagagg 76 ||||||||||||||| ||||||||| Sbjct: 119299 tgccaggaagaagaggctgaagagg 119275
>gb|AC166939.2| Mus musculus BAC clone RP23-72K19 from chromosome 8, complete sequence Length = 236510 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 386 ctttaccatacagaagactga 406 ||||||||||||||||||||| Sbjct: 22949 ctttaccatacagaagactga 22929
>gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, complete sequence Length = 205998 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 gttagaagattctgagcaggg 144 ||||||||||||||||||||| Sbjct: 119712 gttagaagattctgagcaggg 119732
>gb|AC090402.8| Homo sapiens chromosome 18, clone RP11-739D7, complete sequence Length = 150690 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 gtgagctatcattcactaccctcct 213 ||||||||||||||| ||||||||| Sbjct: 143331 gtgagctatcattcaataccctcct 143355
>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10) Length = 98944 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 52 tgccaggaagaagagcctgaagagg 76 ||||||||||||||| ||||||||| Sbjct: 40840 tgccaggaagaagaggctgaagagg 40816
>gb|AC107896.7| Homo sapiens chromosome 18, clone RP11-718I15, complete sequence Length = 185750 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 gtgagctatcattcactaccctcct 213 ||||||||||||||| ||||||||| Sbjct: 42447 gtgagctatcattcaataccctcct 42423
>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17 (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene, complete sequence Length = 371157 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 gttagaagattctgagcaggg 144 ||||||||||||||||||||| Sbjct: 110391 gttagaagattctgagcaggg 110371
>gb|AC132372.4| Mus musculus BAC clone RP23-478B10 from 8, complete sequence Length = 178694 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 ctttaccatacagaagactga 406 ||||||||||||||||||||| Sbjct: 47595 ctttaccatacagaagactga 47615
>dbj|AP006650.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT30M07, TM0331a, complete sequence Length = 30115 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 tgagcagggccattatgctga 156 ||||||||||||||||||||| Sbjct: 16392 tgagcagggccattatgctga 16372
>gb|BT017210.1| Zea mays clone EL01N0372B05.c mRNA sequence Length = 1278 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 44 aagatggatgccaggaagaagagcctgaagag 75 ||||||||||| ||||||||||| ||||||| Sbjct: 878 aagatggatgcacggaagaagagcttgaagag 909
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 caggaagaagagcctgaaga 74 |||||||||||||||||||| Sbjct: 1239077 caggaagaagagcctgaaga 1239058
>gb|AC121574.3| Mus musculus BAC clone RP23-241E9 from 14, complete sequence Length = 209230 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 27887 caaaatcccagctgagaaga 27906
>emb|CR731569.2|CNS0GRFA Tetraodon nigroviridis full-length cDNA Length = 1643 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1280 caaaatcccagctgagaaga 1261
>emb|CR727396.2|CNS0GO7E Tetraodon nigroviridis full-length cDNA Length = 1462 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1088 caaaatcccagctgagaaga 1069
>emb|CR726992.2|CNS0GNW6 Tetraodon nigroviridis full-length cDNA Length = 1531 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1141 caaaatcccagctgagaaga 1122
>emb|CR726957.1|CNS0GNV7 Tetraodon nigroviridis full-length cDNA Length = 1654 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1268 caaaatcccagctgagaaga 1249
>emb|CR726803.1|CNS0GNQX Tetraodon nigroviridis full-length cDNA Length = 1458 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1090 caaaatcccagctgagaaga 1071
>emb|CR724249.2|CNS0GLRZ Tetraodon nigroviridis full-length cDNA Length = 1505 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1136 caaaatcccagctgagaaga 1117
>emb|CR723701.1|CNS0GLCR Tetraodon nigroviridis full-length cDNA Length = 1659 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1290 caaaatcccagctgagaaga 1271
>emb|CR722773.2|CNS0GKMZ Tetraodon nigroviridis full-length cDNA Length = 830 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 465 caaaatcccagctgagaaga 446
>emb|CR721727.2|CNS0GJTX Tetraodon nigroviridis full-length cDNA Length = 847 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 464 caaaatcccagctgagaaga 445
>emb|CR721454.2|CNS0GJMC Tetraodon nigroviridis full-length cDNA Length = 564 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 175 caaaatcccagctgagaaga 156
>emb|CR686601.2|CNS0FSQD Tetraodon nigroviridis full-length cDNA Length = 1371 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 1041 caaaatcccagctgagaaga 1022
>emb|CR636891.1|CNS0EQE9 Tetraodon nigroviridis full-length cDNA Length = 1262 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 826 caaaatcccagctgagaaga 807
>emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chromosome 17, complete sequence Length = 176004 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 gagaagaagatggatgccaggaagaaga 65 ||||||||||||||||| ||||||||| Sbjct: 2408 gagaagaagatggatgcatggaagaaga 2381
>gb|AC132859.11| Mus musculus chromosome 1, clone RP24-389O14, complete sequence Length = 128305 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 aagtaactgaatgacagaaa 490 |||||||||||||||||||| Sbjct: 35194 aagtaactgaatgacagaaa 35175
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 attttcaggtttcgttacag 255 |||||||||||||||||||| Sbjct: 3588317 attttcaggtttcgttacag 3588336
>emb|AL163812.1|ATF14F18 Arabidopsis thaliana DNA chromosome 5, BAC clone F14F18 (ESSA project) Length = 103638 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 289 gaagagatttgctagttcagtcatggag 316 |||||||||||||| || |||||||||| Sbjct: 12732 gaagagatttgctattttagtcatggag 12705
>gb|AE014177.1| Mus musculus piebald deletion region section 5 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 caaaatcccagctgagaaga 44 |||||||||||||||||||| Sbjct: 229537 caaaatcccagctgagaaga 229518
>gb|AC114971.2| Homo sapiens chromosome 5 clone RP11-3H15, complete sequence Length = 146463 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cctgaagaggctgtaacagc 86 |||||||||||||||||||| Sbjct: 120856 cctgaagaggctgtaacagc 120875
>gb|AC093867.3| Homo sapiens BAC clone RP11-587P6 from 4, complete sequence Length = 75164 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 aaagctttgtgtttccatgg 508 |||||||||||||||||||| Sbjct: 39492 aaagctttgtgtttccatgg 39473
>emb|BX005351.7| Zebrafish DNA sequence from clone CH211-266A16 in linkage group 17, complete sequence Length = 167042 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tgtcgttaaaaaaggattta 362 |||||||||||||||||||| Sbjct: 17849 tgtcgttaaaaaaggattta 17830
>emb|AL807810.19| Mouse DNA sequence from clone RP23-186F3 on chromosome 4, complete sequence Length = 165488 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tggatgccaggaagaagagc 67 |||||||||||||||||||| Sbjct: 142292 tggatgccaggaagaagagc 142311
>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete sequence Length = 132817 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ttaaaaaaggatttatgatt 367 |||||||||||||||||||| Sbjct: 64299 ttaaaaaaggatttatgatt 64280
>emb|AL928843.9| Zebrafish DNA sequence from clone DKEY-7P8 in linkage group 7, complete sequence Length = 179577 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ctgaatgacagaaaagcttt 496 |||||||||||||||||||| Sbjct: 65067 ctgaatgacagaaaagcttt 65048
>gb|AC153888.3| Mus musculus 6 BAC RP23-428L22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse6 BAC Library) complete sequence Length = 178961 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 agaagagcctgaagaggctgtaac 83 ||||||||||||||| |||||||| Sbjct: 134830 agaagagcctgaagaagctgtaac 134807
>emb|AL672017.10| Mouse DNA sequence from clone RP23-306J24 on chromosome X, complete sequence Length = 199473 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 agttagaagattctgagcag 142 |||||||||||||||||||| Sbjct: 720 agttagaagattctgagcag 701
>emb|AL844556.4| Mouse DNA sequence from clone RP23-21N12 on chromosome 2, complete sequence Length = 178656 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 acatctaaactaattttcag 243 |||||||||||||||||||| Sbjct: 75145 acatctaaactaattttcag 75164
>emb|AL670100.11| Mouse DNA sequence from clone RP23-226J17 on chromosome X, complete sequence Length = 96916 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 agttagaagattctgagcag 142 |||||||||||||||||||| Sbjct: 95636 agttagaagattctgagcag 95617 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,753,270 Number of Sequences: 3902068 Number of extensions: 5753270 Number of successful extensions: 100409 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100248 Number of HSP's gapped (non-prelim): 161 length of query: 643 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 620 effective length of database: 17,143,297,704 effective search space: 10628844576480 effective search space used: 10628844576480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)