ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA1A_BOVIN (P18130) Alpha-1A adrenergic receptor (Alpha 1A-adre... 31 3.5
2TRPA_METCA (Q604P4) Tryptophan synthase alpha chain (EC 4.2.1.20) 30 4.5
3U171_DROME (Q9VUB4) Hypothetical UPF0171 protein CG8783 30 5.9
4M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kin... 30 7.7

>ADA1A_BOVIN (P18130) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)|
           (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor)
          Length = 466

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 485 DQILWFNNFRHAARSSARVHPCVTPGSCRTIGIRSHMFLVVACKFGVS 628
           D +  +  F    R SAR+     P +C T  +RS  FL V C  G S
Sbjct: 392 DGVCEWKIFSSLPRGSARMAVARDPSACTTARVRSKSFLQVCCCLGPS 439



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>TRPA_METCA (Q604P4) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 267

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 498 GSTTSDMPPVVVREFIPVLHQGVVEP 575
           G  T DMPP    EF+P+LH+  ++P
Sbjct: 125 GVLTVDMPPEEAGEFVPMLHRAGLDP 150



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>U171_DROME (Q9VUB4) Hypothetical UPF0171 protein CG8783|
          Length = 610

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -3

Query: 384 VWLISY-LLLVVQNQVGMLQT-DELNQNLSLKHQAGQKVPSEVTDH-PKFEFLHGDMVRI 214
           +W++ + LL+ +   V  + + DE   + S  +     +  E  D  P  + LHG M+ +
Sbjct: 398 IWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLRDAISDEEGDQEPDADELHGSMLSM 457

Query: 213 LHHPYLTPTLLADHKKR 163
             HP   P +L    +R
Sbjct: 458 SSHPLPVPAVLVGGHRR 474



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>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 336 MLQTDELNQNLSLKHQA-GQKVPSEVTDHPKFEFLHGDMVRILHHPYLTPTLLADHKKRR 160
           MLQ +   + L  + QA  ++ P  +  HP    LHG+ +  L      P  L+ H KR 
Sbjct: 480 MLQLELKERELLRREQALERRCPGLLKSHPSRGLLHGNTMEKLIKKRNVPQKLSPHSKRP 539

Query: 159 H*LQEQSQL 133
             L+ +S L
Sbjct: 540 DILKTESLL 548


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,060,545
Number of Sequences: 219361
Number of extensions: 1886611
Number of successful extensions: 4569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4569
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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