ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome... 60 8e-06
2gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome... 60 8e-06
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
4dbj|AK061526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
5dbj|AK061071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
6gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome... 60 8e-06
7gb|AY106949.1| Zea mays PCO090844 mRNA sequence 52 0.002
8ref|NM_002911.3| Homo sapiens UPF1 regulator of nonsense transcr... 46 0.12
9gb|BC039817.1| Homo sapiens UPF1 regulator of nonsense transcrip... 46 0.12
10gb|AC004517.1|AC004517 Homo sapiens chromosome 19, cosmid F19807... 46 0.12
11gb|AC003972.1|AC003972 Homo sapiens DNA from chromosome 19, cosm... 46 0.12
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
13dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
14dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
15emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.9
16emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 42 1.9
17gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence 42 1.9
18gb|AC044893.5| Homo sapiens chromosome 8, clone RP11-696E24, com... 42 1.9
19emb|BX831605.1|CNS09ZQ4 Arabidopsis thaliana Full-length cDNA Co... 42 1.9
20emb|BX830747.1|CNS09ZGY Arabidopsis thaliana Full-length cDNA Co... 42 1.9
21gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complet... 40 7.4
22gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, comple... 40 7.4
23gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome... 40 7.4
24gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complet... 40 7.4
25emb|AL160279.21| Human DNA sequence from clone RP11-65B23 on chr... 40 7.4
26emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chr... 40 7.4
27emb|AL604024.7| Mouse DNA sequence from clone RP23-421F23 on chr... 40 7.4
28gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, com... 40 7.4
29emb|CR523103.1| Gallus gallus finished cDNA, clone ChEST215j20 40 7.4
30gb|AC023781.5| Homo sapiens chromosome 8, clone RP11-149P24, com... 40 7.4
31gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.4
32gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, co... 40 7.4
33gb|AC130686.15| Homo sapiens chromosome 17, clone RP13-415G19, c... 40 7.4
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.4
35gb|AC105208.15| Homo sapiens chromosome 17, clone CTD-3226O14, c... 40 7.4
36gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete... 40 7.4
37gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 40 7.4
38gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, com... 40 7.4
39gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, comple... 40 7.4
40gb|U87283.1|RCU87283 Rhodobacter capsulatus LysR-type transcript... 40 7.4
41emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, comp... 40 7.4
42gb|AC169518.1| Mus musculus chromosome 8, clone RP23-454H8, comp... 40 7.4
43emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chr... 40 7.4 
>gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_F01,
             complete sequence
          Length = 118799

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                           
Query: 7     gctggggagctccaaaacct-ctggtggagatgatcaggcaggaaa 51
             |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 95733 gctggggagcgccaaaaccttctggtggagatgaccaggcaggaaa 95778



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 292   ccaaggcggcggtggcggcagttcctgggacaagg 326
             |||||| || ||||||||||| |||||||||||||
Sbjct: 96127 ccaaggaggtggtggcggcagctcctgggacaagg 96161
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>gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
           OSJNBb0013J02, complete sequence
          Length = 118026

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 7   gctggggagctccaaaacct-ctggtggagatgatcaggcaggaaa 51
           |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 635 gctggggagcgccaaaaccttctggtggagatgaccaggcaggaaa 680



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 292  ccaaggcggcggtggcggcagttcctgggacaagg 326
            |||||| || ||||||||||| |||||||||||||
Sbjct: 1029 ccaaggaggtggtggcggcagctcctgggacaagg 1063
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                              
Query: 7        gctggggagctccaaaacct-ctggtggagatgatcaggcaggaaa 51
                |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 24813750 gctggggagcgccaaaaccttctggtggagatgaccaggcaggaaa 24813795



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 292      ccaaggcggcggtggcggcagttcctgggacaagg 326
                |||||| || ||||||||||| |||||||||||||
Sbjct: 24814144 ccaaggaggtggtggcggcagctcctgggacaagg 24814178
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>dbj|AK061526.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D08, full
           insert sequence
          Length = 1091

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 7   gctggggagctccaaaacct-ctggtggagatgatcaggcaggaaa 51
           |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 396 gctggggagcgccaaaaccttctggtggagatgaccaggcaggaaa 441



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 292 ccaaggcggcggtggcggcagttcctgggacaagg 326
           |||||| || ||||||||||| |||||||||||||
Sbjct: 790 ccaaggaggtggtggcggcagctcctgggacaagg 824
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>dbj|AK061071.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C09, full
           insert sequence
          Length = 1149

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                         
Query: 7   gctggggagctccaaaacct-ctggtggagatgatcaggcaggaaa 51
           |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 336 gctggggagcgccaaaaccttctggtggagatgaccaggcaggaaa 381



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 292 ccaaggcggcggtggcggcagttcctgggacaagg 326
           |||||| || ||||||||||| |||||||||||||
Sbjct: 730 ccaaggaggtggtggcggcagctcctgggacaagg 764
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>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086B08,
              complete sequence
          Length = 148274

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                            
Query: 7      gctggggagctccaaaacct-ctggtggagatgatcaggcaggaaa 51
              |||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct: 140249 gctggggagcgccaaaaccttctggtggagatgaccaggcaggaaa 140294



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 292    ccaaggcggcggtggcggcagttcctgggacaagg 326
              |||||| || ||||||||||| |||||||||||||
Sbjct: 140643 ccaaggaggtggtggcggcagctcctgggacaagg 140677
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>gb|AY106949.1| Zea mays PCO090844 mRNA sequence
          Length = 482

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 24  cctctggtggagatgatcaggcaggaaaga 53
           |||||||||||||||| |||||||||||||
Sbjct: 177 cctctggtggagatgaccaggcaggaaaga 206
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>ref|NM_002911.3| Homo sapiens UPF1 regulator of nonsense transcripts homolog (yeast)
           (UPF1), mRNA
          Length = 5360

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 296 ggcggcggtggcggcagttcctg 318
           |||||||||||||||||||||||
Sbjct: 10  ggcggcggtggcggcagttcctg 32
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>gb|BC039817.1| Homo sapiens UPF1 regulator of nonsense transcripts homolog
           (yeast), mRNA (cDNA clone MGC:48687 IMAGE:5555509),
           complete cds
          Length = 5357

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 296 ggcggcggtggcggcagttcctg 318
           |||||||||||||||||||||||
Sbjct: 7   ggcggcggtggcggcagttcctg 29
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>gb|AC004517.1|AC004517 Homo sapiens chromosome 19, cosmid F19807, complete sequence
          Length = 44062

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 296   ggcggcggtggcggcagttcctg 318
             |||||||||||||||||||||||
Sbjct: 31432 ggcggcggtggcggcagttcctg 31454
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>gb|AC003972.1|AC003972 Homo sapiens DNA from chromosome 19, cosmid R33485 containing
           pNORF1, complete sequence
          Length = 42667

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 296 ggcggcggtggcggcagttcctg 318
           |||||||||||||||||||||||
Sbjct: 625 ggcggcggtggcggcagttcctg 647
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 285      gcgggggccaaggcggcggtggcggc 310
                ||||||| ||||||||||||||||||
Sbjct: 24580951 gcggggggcaaggcggcggtggcggc 24580976
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 285  gcgggggccaaggcggcggtggcggc 310
            ||||||| ||||||||||||||||||
Sbjct: 6914 gcggggggcaaggcggcggtggcggc 6939
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>dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090G17, full
           insert sequence
          Length = 1451

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 285 gcgggggccaaggcggcggtggcggc 310
           ||||||| ||||||||||||||||||
Sbjct: 384 gcggggggcaaggcggcggtggcggc 409
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 290    ggccaaggcggcggtggcggc 310
              |||||||||||||||||||||
Sbjct: 190272 ggccaaggcggcggtggcggc 190252
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 290    ggccaaggcggcggtggcggc 310
              |||||||||||||||||||||
Sbjct: 126762 ggccaaggcggcggtggcggc 126742
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>gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence
          Length = 160275

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 369    gcagtgatggtggtagtgggtggta 393
              ||||| |||||||||||||||||||
Sbjct: 123982 gcagtaatggtggtagtgggtggta 124006
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>gb|AC044893.5| Homo sapiens chromosome 8, clone RP11-696E24, complete sequence
          Length = 190121

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 369   gcagtgatggtggtagtgggtggta 393
             ||||| |||||||||||||||||||
Sbjct: 21343 gcagtaatggtggtagtgggtggta 21367
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>emb|BX831605.1|CNS09ZQ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH18ZD11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1941

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 295  aggcggcggtggcggcagttc 315
            |||||||||||||||||||||
Sbjct: 1629 aggcggcggtggcggcagttc 1609
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>emb|BX830747.1|CNS09ZGY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZC10 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 295  aggcggcggtggcggcagttc 315
            |||||||||||||||||||||
Sbjct: 1411 aggcggcggtggcggcagttc 1391
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>gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complete sequence
          Length = 56458

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   aaggcggcggtggcggcagt 313
             ||||||||||||||||||||
Sbjct: 36905 aaggcggcggtggcggcagt 36886
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>gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, complete sequence
          Length = 90252

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   gtggggtgctcctcctggca 140
             ||||||||||||||||||||
Sbjct: 18751 gtggggtgctcctcctggca 18770
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>gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome 18, complete sequence
          Length = 170221

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ggggaaagagcaatgaagat 205
             ||||||||||||||||||||
Sbjct: 80745 ggggaaagagcaatgaagat 80726
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>gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complete sequence
          Length = 216959

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ggggaaagagcaatgaagat 205
             ||||||||||||||||||||
Sbjct: 72123 ggggaaagagcaatgaagat 72104
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>emb|AL160279.21| Human DNA sequence from clone RP11-65B23 on chromosome 9 Contains the
             3' end of the DAPK1 gene for death-associated protein
             kinase 1, the CTSL gene for cathepsin L, a ,eukaryotic
             translation initiation factor 3, subunit 1 alpha, 35kDa
             (EIF3S1) pseudogene, a cathepsin pseudogene and two CpG
             islands, complete sequence
          Length = 170240

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    cctggagtcaaaacaagcca 88
             ||||||||||||||||||||
Sbjct: 75095 cctggagtcaaaacaagcca 75114
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>emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chromosome 1, complete
              sequence
          Length = 127892

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    tgatggtggtagtgggtggt 392
              ||||||||||||||||||||
Sbjct: 115649 tgatggtggtagtgggtggt 115630
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>emb|AL604024.7| Mouse DNA sequence from clone RP23-421F23 on chromosome 11 Contains
            part of the Bcas3 gene for breast carcinoma amplified
            sequence 3, complete sequence
          Length = 217278

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  aggtggaggaggatcatggg 188
            ||||||||||||||||||||
Sbjct: 4658 aggtggaggaggatcatggg 4677
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>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence
          Length = 207283

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tgctcctcctggcaacacta 146
             ||||||||||||||||||||
Sbjct: 68089 tgctcctcctggcaacacta 68108
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>emb|CR523103.1| Gallus gallus finished cDNA, clone ChEST215j20
          Length = 1024

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 127 tgctcctcctggcaacacta 146
           ||||||||||||||||||||
Sbjct: 706 tgctcctcctggcaacacta 687
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>gb|AC023781.5| Homo sapiens chromosome 8, clone RP11-149P24, complete sequence
          Length = 147607

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   ggcagtgatggtggtagtgg 387
             ||||||||||||||||||||
Sbjct: 57200 ggcagtgatggtggtagtgg 57181
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 291     gccaaggcggcggtggcggc 310
               ||||||||||||||||||||
Sbjct: 2387692 gccaaggcggcggtggcggc 2387673
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>gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, complete sequence
          Length = 247595

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    ggcagtgatggtggtagtgg 387
              ||||||||||||||||||||
Sbjct: 114481 ggcagtgatggtggtagtgg 114462
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>gb|AC130686.15| Homo sapiens chromosome 17, clone RP13-415G19, complete sequence
          Length = 208462

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 368    ggcagtgatggtggtagtgg 387
              ||||||||||||||||||||
Sbjct: 115078 ggcagtgatggtggtagtgg 115059
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 286    cgggggccaaggcggcggtggcgg 309
              |||||||| |||||||||||||||
Sbjct: 483189 cgggggccgaggcggcggtggcgg 483166
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>gb|AC105208.15| Homo sapiens chromosome 17, clone CTD-3226O14, complete sequence
          Length = 65233

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   ggcagtgatggtggtagtgg 387
             ||||||||||||||||||||
Sbjct: 30848 ggcagtgatggtggtagtgg 30829
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>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 222    aaggaaccggaggctcagaaggtg 245
              |||||| |||||||||||||||||
Sbjct: 132649 aaggaaacggaggctcagaaggtg 132672
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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    ggatgggacagcagcaaggg 357
              ||||||||||||||||||||
Sbjct: 171698 ggatgggacagcagcaaggg 171717
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>gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, complete sequence
          Length = 220813

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ctcctcctggcaacactaca 148
              ||||||||||||||||||||
Sbjct: 127680 ctcctcctggcaacactaca 127699
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>gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, complete sequence
          Length = 171846

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   tgggacaaggtggccagtgg 336
             ||||||||||||||||||||
Sbjct: 67276 tgggacaaggtggccagtgg 67295
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>gb|U87283.1|RCU87283 Rhodobacter capsulatus LysR-type transcriptional activator CbbRI
           (cbbRI) gene, complete cds
          Length = 1000

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 293 caaggcggcggtggcggcag 312
           ||||||||||||||||||||
Sbjct: 736 caaggcggcggtggcggcag 755
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>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence
          Length = 137155

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 341    tgggacagcagcaagggcggggacgccg 368
              ||||||||||||| ||| ||||||||||
Sbjct: 107359 tgggacagcagcaggggaggggacgccg 107386
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>gb|AC169518.1| Mus musculus chromosome 8, clone RP23-454H8, complete sequence
          Length = 194822

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   ggatgggacagcagcaaggg 357
             ||||||||||||||||||||
Sbjct: 17512 ggatgggacagcagcaaggg 17531
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>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete
              sequence
          Length = 209502

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     aggcaggaaagagggacgga 61
              ||||||||||||||||||||
Sbjct: 145337 aggcaggaaagagggacgga 145318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,894,995
Number of Sequences: 3902068
Number of extensions: 4894995
Number of successful extensions: 102377
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101936
Number of HSP's gapped (non-prelim): 441
length of query: 547
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 524
effective length of database: 17,143,297,704
effective search space: 8983087996896
effective search space used: 8983087996896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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