ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
2dbj|AK100053.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
3dbj|AK098964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
4dbj|AK061833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
5emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4,... 127 4e-26
6ref|XM_473710.1| Oryza sativa (japonica cultivar-group), predic... 123 6e-25
7ref|NM_111959.2| Arabidopsis thaliana arginyltransferase AT3G112... 44 0.47
8gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11... 44 0.47
9gb|AC125055.3| Mus musculus BAC clone RP23-397L11 from chromosom... 42 1.9
10gb|AC126428.3| Mus musculus BAC clone RP24-387B13 from chromosom... 42 1.9
11gb|AC018697.4| Homo sapiens BAC clone RP11-577J12 from 18, compl... 42 1.9
12gb|AC145297.3| Mus musculus BAC clone RP24-196O7 from chromosome... 42 1.9
13gb|U33007.1|SCD9461 Saccharomyces cerevisiae chromosome IV lambd... 42 1.9
14gb|U23812.1|SCU23812 Saccharomyces cerevisiae RNA polymerase II ... 42 1.9
15gb|U09176.1|SCU09176 Saccharomyces cerevisiae Sca1p (SCA1) gene,... 42 1.9
16gb|U42848.1| Caenorhabditis elegans cosmid C31H1, complete sequence 40 7.3
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
18ref|XM_624036.1| PREDICTED: Apis mellifera similar to ENSANGP000... 40 7.3
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
21gb|AC093833.2| Homo sapiens BAC clone RP11-405K23 from 2, comple... 40 7.3
22gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genom... 40 7.3
23dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
24dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
25dbj|AB120420.1| Helicobacter pylori genes for cag pathogenicity ... 40 7.3
26dbj|AB120416.1| Helicobacter pylori genes for cag pathogenicity ... 40 7.3
27emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chro... 40 7.3 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  127 bits (64), Expect = 4e-26
 Identities = 202/248 (81%)
 Strand = Plus / Plus

                                                                            
Query: 25       cctgtaatcgcatgcaacagcggcggtccagtggaaacagtagtgaacgaagcgacaggt 84
                |||||||| ||||||||||| || |||||||||||||||||  | || || | |||||| 
Sbjct: 29778729 cctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacaggg 29778788

                                                                            
Query: 85       tttctatgcgatccctccccgattgaattttccaaagccatgctgaagtttgtgagcgat 144
                ||||| || || |||||  |   ||||||||| ||||||||||||||| | |||| ||||
Sbjct: 29778789 tttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgat 29778848

                                                                            
Query: 145      cacgatctagcggtccggatgggcaaacaagcacgcgaccgcgtggtgcgggaattctcg 204
                ||||||||||| ||   |||||| ||||||||| | | ||  || |||| | | ||||| 
Sbjct: 29778849 cacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctca 29778908

                                                                            
Query: 205      accaagacgttcggcgacctcctgaacggctatgtcctcaatgtctaccaccagaggatc 264
                |||||||| || || ||||| |||||| |||||||||| ||||| ||||| |||||||| 
Sbjct: 29778909 accaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggatt 29778968

                        
Query: 265      gagtgatc 272
                ||||||||
Sbjct: 29778969 gagtgatc 29778976
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>dbj|AK100053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157H01, full
            insert sequence
          Length = 1546

 Score =  127 bits (64), Expect = 4e-26
 Identities = 202/248 (81%)
 Strand = Plus / Plus

                                                                        
Query: 25   cctgtaatcgcatgcaacagcggcggtccagtggaaacagtagtgaacgaagcgacaggt 84
            |||||||| ||||||||||| || |||||||||||||||||  | || || | |||||| 
Sbjct: 1102 cctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacaggg 1161

                                                                        
Query: 85   tttctatgcgatccctccccgattgaattttccaaagccatgctgaagtttgtgagcgat 144
            ||||| || || |||||  |   ||||||||| ||||||||||||||| | |||| ||||
Sbjct: 1162 tttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgat 1221

                                                                        
Query: 145  cacgatctagcggtccggatgggcaaacaagcacgcgaccgcgtggtgcgggaattctcg 204
            ||||||||||| ||   |||||| ||||||||| | | ||  || |||| | | ||||| 
Sbjct: 1222 cacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctca 1281

                                                                        
Query: 205  accaagacgttcggcgacctcctgaacggctatgtcctcaatgtctaccaccagaggatc 264
            |||||||| || || ||||| |||||| |||||||||| ||||| ||||| |||||||| 
Sbjct: 1282 accaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggatt 1341

                    
Query: 265  gagtgatc 272
            ||||||||
Sbjct: 1342 gagtgatc 1349
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>dbj|AK098964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F09, full
            insert sequence
          Length = 1541

 Score =  127 bits (64), Expect = 4e-26
 Identities = 202/248 (81%)
 Strand = Plus / Plus

                                                                        
Query: 25   cctgtaatcgcatgcaacagcggcggtccagtggaaacagtagtgaacgaagcgacaggt 84
            |||||||| ||||||||||| || |||||||||||||||||  | || || | |||||| 
Sbjct: 1097 cctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacaggg 1156

                                                                        
Query: 85   tttctatgcgatccctccccgattgaattttccaaagccatgctgaagtttgtgagcgat 144
            ||||| || || |||||  |   ||||||||| ||||||||||||||| | |||| ||||
Sbjct: 1157 tttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgat 1216

                                                                        
Query: 145  cacgatctagcggtccggatgggcaaacaagcacgcgaccgcgtggtgcgggaattctcg 204
            ||||||||||| ||   |||||| ||||||||| | | ||  || |||| | | ||||| 
Sbjct: 1217 cacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctca 1276

                                                                        
Query: 205  accaagacgttcggcgacctcctgaacggctatgtcctcaatgtctaccaccagaggatc 264
            |||||||| || || ||||| |||||| |||||||||| ||||| ||||| |||||||| 
Sbjct: 1277 accaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggatt 1336

                    
Query: 265  gagtgatc 272
            ||||||||
Sbjct: 1337 gagtgatc 1344
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>dbj|AK061833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D04, full
            insert sequence
          Length = 1546

 Score =  127 bits (64), Expect = 4e-26
 Identities = 202/248 (81%)
 Strand = Plus / Plus

                                                                        
Query: 25   cctgtaatcgcatgcaacagcggcggtccagtggaaacagtagtgaacgaagcgacaggt 84
            |||||||| ||||||||||| || |||||||||||||||||  | || || | |||||| 
Sbjct: 1102 cctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacaggg 1161

                                                                        
Query: 85   tttctatgcgatccctccccgattgaattttccaaagccatgctgaagtttgtgagcgat 144
            ||||| || || |||||  |   ||||||||| ||||||||||||||| | |||| ||||
Sbjct: 1162 tttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgat 1221

                                                                        
Query: 145  cacgatctagcggtccggatgggcaaacaagcacgcgaccgcgtggtgcgggaattctcg 204
            ||||||||||| ||   |||||| ||||||||| | | ||  || |||| | | ||||| 
Sbjct: 1222 cacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctca 1281

                                                                        
Query: 205  accaagacgttcggcgacctcctgaacggctatgtcctcaatgtctaccaccagaggatc 264
            |||||||| || || ||||| |||||| |||||||||| ||||| ||||| |||||||| 
Sbjct: 1282 accaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggatt 1341

                    
Query: 265  gagtgatc 272
            ||||||||
Sbjct: 1342 gagtgatc 1349
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>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06,
             complete sequence
          Length = 178552

 Score =  127 bits (64), Expect = 4e-26
 Identities = 202/248 (81%)
 Strand = Plus / Plus

                                                                         
Query: 25    cctgtaatcgcatgcaacagcggcggtccagtggaaacagtagtgaacgaagcgacaggt 84
             |||||||| ||||||||||| || |||||||||||||||||  | || || | |||||| 
Sbjct: 59655 cctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacaggg 59714

                                                                         
Query: 85    tttctatgcgatccctccccgattgaattttccaaagccatgctgaagtttgtgagcgat 144
             ||||| || || |||||  |   ||||||||| ||||||||||||||| | |||| ||||
Sbjct: 59715 tttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgat 59774

                                                                         
Query: 145   cacgatctagcggtccggatgggcaaacaagcacgcgaccgcgtggtgcgggaattctcg 204
             ||||||||||| ||   |||||| ||||||||| | | ||  || |||| | | ||||| 
Sbjct: 59775 cacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctca 59834

                                                                         
Query: 205   accaagacgttcggcgacctcctgaacggctatgtcctcaatgtctaccaccagaggatc 264
             |||||||| || || ||||| |||||| |||||||||| ||||| ||||| |||||||| 
Sbjct: 59835 accaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggatt 59894

                     
Query: 265   gagtgatc 272
             ||||||||
Sbjct: 59895 gagtgatc 59902
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>ref|XM_473710.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1257

 Score =  123 bits (62), Expect = 6e-25
 Identities = 200/246 (81%)
 Strand = Plus / Plus

                                                                        
Query: 25   cctgtaatcgcatgcaacagcggcggtccagtggaaacagtagtgaacgaagcgacaggt 84
            |||||||| ||||||||||| || |||||||||||||||||  | || || | |||||| 
Sbjct: 1012 cctgtaattgcatgcaacagtggtggtccagtggaaacagtcataaatgacgagacaggg 1071

                                                                        
Query: 85   tttctatgcgatccctccccgattgaattttccaaagccatgctgaagtttgtgagcgat 144
            ||||| || || |||||  |   ||||||||| ||||||||||||||| | |||| ||||
Sbjct: 1072 tttctctgtgagccctctgcccctgaattttcaaaagccatgctgaagctcgtgaacgat 1131

                                                                        
Query: 145  cacgatctagcggtccggatgggcaaacaagcacgcgaccgcgtggtgcgggaattctcg 204
            ||||||||||| ||   |||||| ||||||||| | | ||  || |||| | | ||||| 
Sbjct: 1132 cacgatctagcagttaagatgggtaaacaagcaaggggccatgttgtgcagaagttctca 1191

                                                                        
Query: 205  accaagacgttcggcgacctcctgaacggctatgtcctcaatgtctaccaccagaggatc 264
            |||||||| || || ||||| |||||| |||||||||| ||||| ||||| |||||||| 
Sbjct: 1192 accaagacatttggtgaccttctgaacagctatgtccttaatgtgtaccatcagaggatt 1251

                  
Query: 265  gagtga 270
            ||||||
Sbjct: 1252 gagtga 1257
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>ref|NM_111959.2| Arabidopsis thaliana arginyltransferase AT3G11240 mRNA, complete cds
          Length = 2022

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 457  tattattctctcggataaataa 478
            ||||||||||||||||||||||
Sbjct: 1987 tattattctctcggataaataa 2008
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>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete
             sequence
          Length = 103517

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 457   tattattctctcggataaataa 478
             ||||||||||||||||||||||
Sbjct: 55685 tattattctctcggataaataa 55664
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>gb|AC125055.3| Mus musculus BAC clone RP23-397L11 from chromosome 7, complete sequence
          Length = 209066

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 338    cttgtgagttctgactttgat 358
              |||||||||||||||||||||
Sbjct: 109710 cttgtgagttctgactttgat 109690
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>gb|AC126428.3| Mus musculus BAC clone RP24-387B13 from chromosome 10, complete
            sequence
          Length = 225663

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 329  tccttgtgacttgtgagttct 349
            |||||||||||||||||||||
Sbjct: 2055 tccttgtgacttgtgagttct 2035
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>gb|AC018697.4| Homo sapiens BAC clone RP11-577J12 from 18, complete sequence
          Length = 180562

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 106   attgaattttccaaagccatgctgaagtt 134
             ||||||||||||||||||| |||| ||||
Sbjct: 18618 attgaattttccaaagccacgctggagtt 18646
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>gb|AC145297.3| Mus musculus BAC clone RP24-196O7 from chromosome 10, complete sequence
          Length = 172595

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 329    tccttgtgacttgtgagttct 349
              |||||||||||||||||||||
Sbjct: 162328 tccttgtgacttgtgagttct 162308
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>gb|U33007.1|SCD9461 Saccharomyces cerevisiae chromosome IV lambda 3641 and cosmids 9461,
             9831, and 9410
          Length = 78500

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 458   attattctctcggataaataa 478
             |||||||||||||||||||||
Sbjct: 53927 attattctctcggataaataa 53907
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>gb|U23812.1|SCU23812 Saccharomyces cerevisiae RNA polymerase II holoenzyme component
            (SRB9) gene, complete cds
          Length = 4849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 458  attattctctcggataaataa 478
            |||||||||||||||||||||
Sbjct: 4390 attattctctcggataaataa 4410
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>gb|U09176.1|SCU09176 Saccharomyces cerevisiae Sca1p (SCA1) gene, complete cds
          Length = 4812

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 458  attattctctcggataaataa 478
            |||||||||||||||||||||
Sbjct: 4467 attattctctcggataaataa 4487
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>gb|U42848.1| Caenorhabditis elegans cosmid C31H1, complete sequence
          Length = 39916

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 444  ttctcgatctctgtattatt 463
            ||||||||||||||||||||
Sbjct: 3664 ttctcgatctctgtattatt 3683
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 408      ttgcattattggcctgtctg 427
                ||||||||||||||||||||
Sbjct: 21958019 ttgcattattggcctgtctg 21958038
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>ref|XM_624036.1| PREDICTED: Apis mellifera similar to ENSANGP00000028388
           (LOC551645), partial mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 499 tgaacagtcgggatcagttc 518
           ||||||||||||||||||||
Sbjct: 443 tgaacagtcgggatcagttc 462
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 327      tatccttgtgacttgtgagt 346
                ||||||||||||||||||||
Sbjct: 27716528 tatccttgtgacttgtgagt 27716509
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 408      ttgcattattggcctgtctg 427
                ||||||||||||||||||||
Sbjct: 21951048 ttgcattattggcctgtctg 21951067
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>gb|AC093833.2| Homo sapiens BAC clone RP11-405K23 from 2, complete sequence
          Length = 112968

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   tattctctcggataaataag 479
             ||||||||||||||||||||
Sbjct: 67098 tattctctcggataaataag 67079
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>gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genomic sequence, complete
             sequence
          Length = 127210

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   ttgcattattggcctgtctg 427
             ||||||||||||||||||||
Sbjct: 50997 ttgcattattggcctgtctg 50978
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0496C02
          Length = 148419

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  tatccttgtgacttgtgagt 346
            ||||||||||||||||||||
Sbjct: 8907 tatccttgtgacttgtgagt 8888
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   tatccttgtgacttgtgagt 346
             ||||||||||||||||||||
Sbjct: 95630 tatccttgtgacttgtgagt 95611
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>dbj|AB120420.1| Helicobacter pylori genes for cag pathogenicity island protein,
             complete cds, strain:F79
          Length = 37459

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ctgtaatcgcatgcaacagc 45
             ||||||||||||||||||||
Sbjct: 18942 ctgtaatcgcatgcaacagc 18961
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>dbj|AB120416.1| Helicobacter pylori genes for cag pathogenicity island protein,
             complete cds, strain:F16
          Length = 37029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ctgtaatcgcatgcaacagc 45
             ||||||||||||||||||||
Sbjct: 18863 ctgtaatcgcatgcaacagc 18882
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>emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chromosome 13, complete
             sequence
          Length = 182622

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ccatgctgaagtttgtgagc 141
             ||||||||||||||||||||
Sbjct: 99152 ccatgctgaagtttgtgagc 99133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,743,230
Number of Sequences: 3902068
Number of extensions: 3743230
Number of successful extensions: 63842
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63698
Number of HSP's gapped (non-prelim): 144
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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