ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GEF1_SCHPO (Q09763) Rho guanine nucleotide exchange factor gef1 28 4.5
2SMP1_MAGPO (Q9Y778) Subtilisin-like proteinase Mp1 precursor (EC... 28 4.5
3SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-rel... 28 5.9
4RBN_IDILO (Q5QV33) tRNA-processing ribonuclease BN (EC 3.1.-.-) ... 28 5.9

>GEF1_SCHPO (Q09763) Rho guanine nucleotide exchange factor gef1|
          Length = 753

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 15  GIIYLESLQKVTLIYSSHCSSCAGVTETVAVLRKEAAS 128
           G+I+LESL ++  IY+ +C+    V + +   R++ A+
Sbjct: 398 GLIFLESLSEIGQIYTGYCNRQDSVFKIITKWREKPAT 435



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>SMP1_MAGPO (Q9Y778) Subtilisin-like proteinase Mp1 precursor (EC 3.4.21.-)|
          Length = 404

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 204 SFHQHLRWTGKSHRRH*QKEQS 139
           SFH HL W G  HRR   K  +
Sbjct: 46  SFHNHLSWVGDVHRRSVSKRDT 67



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>SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-related sperm|
           protein Spag-1) (TPR-containing protein involved in
           spermatogenesis) (TPIS)
          Length = 901

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 77  LCWCHRDSCCLEEGSCQPC*SDCS 148
           + + +R +C L+EG+C+ C  DC+
Sbjct: 473 ILYSNRAACYLKEGNCRDCIQDCN 496



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>RBN_IDILO (Q5QV33) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)|
          Length = 284

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 217 LVVVIFPSTLEMDGKISSSPLTERTIRLAWLAASFLKTATVSVTPAQLEQCE 62
           L +  FP+   + G +++ P+    I L+WL        TVS+   QL+Q E
Sbjct: 229 LYITFFPTYQAIYGALATIPILIVWIYLSWLIVLIGAVLTVSLEEYQLQQPE 280


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,731,867
Number of Sequences: 219361
Number of extensions: 703688
Number of successful extensions: 1874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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