>YRKF_BACSU (P54433) UPF0033 protein yrkF|
          Length = 185

 Score = 35.4 bits (80), Expect = 0.065
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 183 KRLVAEEGYTVLDVRDRRQYERAHVRASAHVPL-YIENEDNDI 308
           +++ ++E   +LDVR+  +YE+AH+    H+PL  +E   N++
Sbjct: 97  QKVDSDESLNILDVREIEEYEKAHIPGVVHIPLGEVEKRANEL 139

>YIBN_ECOLI (P0AG27) Hypothetical protein yibN|
          Length = 143

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 153 EVSFVDGDEAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQ 329
           +V  +   EA RL+ +E   V+D+R R  + + H+  S ++ L  E + N++G + K +
Sbjct: 36  KVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINL-LPSEIKANNVGELEKHK 93

>YIBN_ECOL6 (P0AG28) Hypothetical protein yibN|
          Length = 143

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 153 EVSFVDGDEAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQ 329
           +V  +   EA RL+ +E   V+D+R R  + + H+  S ++ L  E + N++G + K +
Sbjct: 36  KVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINL-LPSEIKANNVGELEKHK 93

>YIBN_ECO57 (P0AG29) Hypothetical protein yibN|
          Length = 143

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 153 EVSFVDGDEAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQ 329
           +V  +   EA RL+ +E   V+D+R R  + + H+  S ++ L  E + N++G + K +
Sbjct: 36  KVKVITRGEATRLINKEDAVVVDLRQRDDFRKGHIAGSINL-LPSEIKANNVGELEKHK 93

>GLPE_PSEPK (Q88QT9) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)|
          Length = 110

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 153 EVSFVDGDEAKRLVAEEGYTVLDVRDRRQYERAHVRASAH-----VPLYIENEDNDIGTI 317
           E   +  ++A  L  +EG  V+D+RD + +   H+  + H     V  +I N D D  T+
Sbjct: 3   EFKRIPPEQALELRKKEGAVVVDIRDPQAFAAGHITGARHLDNHSVADFIRNADLDAPTL 62

Query: 318 I 320
           +
Sbjct: 63  V 63

>YCF2_EPIVI (P30072) Protein ycf2|
          Length = 2216

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 216 LDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGLSF 371
           + V D  Q + ++ ++S H    I NED++  T+I ++       +F+  SF
Sbjct: 388 VQVTDSSQLKGSYYKSSGHFYSVISNEDSEYHTLINQREIKPLKSIFFDPSF 439

>SELU_SHEON (Q8EKA0) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 376

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 204 GYTVLDVRDRRQYERAHVRASAHVPLYIENEDNDIGTIIKRQAHNNFAGLFYGL 365
           G  ++D+R   ++ R    +S ++PL ++ E   +GT  K+Q       L + L
Sbjct: 18  GKPLIDLRAPIEFNRGAFPSSVNLPLMVDKEREKVGTCYKQQGQQAAIALGHSL 71

>GLPE_ACTPL (Q6T893) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)|
          Length = 108

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 177 EAKRLVAEEGYTVLDVRDRRQYERAHVRASAHV 275
           +A  L+  EG T+ D+RD R+Y  +H + + H+
Sbjct: 12  QAWELIENEGATLADIRDGRRYAYSHPQDAFHL 44

>GLPE_COXBU (Q83DV5) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)|
          Length = 107

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +3

Query: 177 EAKRLVAEEGYTVLDVRDRRQYERAHVRASAHVPL-----YIENEDND 305
           EA  LV +    + DVRD+  YE  H+  + H+ +     Y E  D +
Sbjct: 10  EAWELVKKRDIVIADVRDQDSYEEEHIANALHLSMAKLQEYSEKADKE 57

>YCXH_PORPU (P51335) Hypothetical 43.4 kDa protein in rpl9-rpl11 intergenic|
           region (ORF382)
          Length = 382

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 207 YTVLDVRDRRQYERAHVRASAHVPL 281
           Y +LDVR + +YE +H+  + ++P+
Sbjct: 292 YIILDVRSKEEYEESHLDKAVNLPI 316

>PTH_AQUAE (O66677) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 192

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 306 IGTIIKRQAHNNFAGLFYGLSFTKLNRDFTKTVRSKFSPESKLLV 440
           + +IIK     NF  L  G+   K   D  K V S FSPE + ++
Sbjct: 116 VESIIKYIGTQNFPRLRIGIGRPKKKEDVVKYVLSPFSPEEEKVI 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,863,368
Number of Sequences: 219361
Number of extensions: 439482
Number of successful extensions: 1392
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)