ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4j22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105920.1| Zea mays PCO073266 mRNA sequence Length = 1079 Score = 301 bits (152), Expect = 1e-78 Identities = 410/496 (82%) Strand = Plus / Plus Query: 5 acgcccatctacatcgtcgggacggactgcaatgccaagcgcaacatcgccaagctgctc 64 ||||| ||||| || || || ||||| |||| |||||||||||||||||||||||||| Sbjct: 280 acgccaatctatattgttggtacggattgcacagccaagcgcaacatcgccaagctgctt 339 Query: 65 gccaactccatcatttaccgctacctctgcagcgaggacctgctcgaggacgtcctcggc 124 || || ||||| || |||||||||||| |||| ||||| ||||| ||||| || || || Sbjct: 340 gcgaattccataatataccgctacctcagcagtgaggaactgcttgaggatgttcttggt 399 Query: 125 ggcaaggacgccctcgccgcgttccgggagtccgacgagaagggctacctcgaagtcgag 184 ||||||||||||||| || ||| ||| || || |||||||| || || ||||||||| Sbjct: 400 ggcaaggacgccctcagagccttcaaggaatctgatgagaagggttatcttgaagtcgag 459 Query: 185 accgaggggctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggc 244 ||||| ||| | |||||||||||||||||||| ||||| || || ||||| || |||||| Sbjct: 460 accgaagggttaaagcagctcacgtccatgggtagccttgtactgtgctgtggagatggc 519 Query: 245 gccgtcatgaactccaccaacctggggctgctgaggcatggagtctccatctggatcgac 304 ||||| |||||||| ||||| || ||||||||||||||||| |||||||| ||||| || Sbjct: 520 gccgttatgaactcaaccaatctagggctgctgaggcatggtgtctccatttggattgat 579 Query: 305 gtcccgcttgaattagccgtgaatgacatgttgaagagcaagggggcggcagctatttca 364 || || |||||| | || | ||||||||||||||||||| ||| | ||||| | || Sbjct: 580 gttcctcttgaaatggcagcaaatgacatgttgaagagcacgggaacacaagctactaca 639 Query: 365 gaccctgattccttttctcaggcaatggcaaagctccgtcagcgttatgatgatctgaag 424 || || || || ||||||||||| ||| |||||||||||||| |||||||| ||||| Sbjct: 640 gatccagactctttttctcaggcgatgagcaagctccgtcagcggtatgatgaactgaaa 699 Query: 425 gagcgctatgcagtttctgatgttactgtttcactacagaatgtggcttctcagctaggc 484 |||||||||| ||||||||| ||||||||||| |||| |||||||||||||||| || Sbjct: 700 gagcgctatggggtttctgatattactgtttcagtacaaaatgtggcttctcagcggggg 759 Query: 485 tacagcagcatcgact 500 ||||| ||||| |||| Sbjct: 760 tacagtagcattgact 775
>ref|XM_549818.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1126 Score = 226 bits (114), Expect = 6e-56 Identities = 279/334 (83%) Strand = Plus / Plus Query: 8 cccatctacatcgtcgggacggactgcaatgccaagcgcaacatcgccaagctgctcgcc 67 ||||||||||||||||| || ||||| | ||||||||||||||| || ||||| || ||| Sbjct: 273 cccatctacatcgtcggaaccgactgtactgccaagcgcaacattgcaaagctccttgcc 332 Query: 68 aactccatcatttaccgctacctctgcagcgaggacctgctcgaggacgtcctcggcggc 127 || |||||||| ||||||||||||||||| || || ||||| ||||| || || || ||| Sbjct: 333 aattccatcatataccgctacctctgcagtgaagagctgctggaggatgttcttggaggc 392 Query: 128 aaggacgccctcgccgcgttccgggagtccgacgagaagggctacctcgaagtcgagacc 187 || || |||||| || |||||||| |||||| || |||||||||||||||||||| Sbjct: 393 aaagatgccctcaatgctttccgggaatccgacctcaacggctacctcgaagtcgagact 452 Query: 188 gaggggctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgcc 247 || || ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || Sbjct: 453 gaaggcctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgct 512 Query: 248 gtcatgaactccaccaacctggggctgctgaggcatggagtctccatctggatcgacgtc 307 ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||| || | Sbjct: 513 gtcatgaactcaaccaatctagggctactgaggcatggagtctccatttggattgatatt 572 Query: 308 ccgcttgaattagccgtgaatgacatgttgaaga 341 || || ||||| | |||||||| |||||||||| Sbjct: 573 cctctggaattggtggtgaatgatatgttgaaga 606 Score = 111 bits (56), Expect = 2e-21 Identities = 127/148 (85%), Gaps = 2/148 (1%) Strand = Plus / Plus Query: 355 agctatttcagaccctgattccttttctcaggcaatg-gcaaagctccgtcagcgttatg 413 ||||| |||||||||||||||||||||| |||||||| ||| || |||| ||||| | | Sbjct: 611 agctacttcagaccctgattccttttctgaggcaatgagcagag-tccgacagcgacacg 669 Query: 414 atgatctgaaggagcgctatgcagtttctgatgttactgtttcactacagaatgtggctt 473 |||| || || |||||||||| |||||||||| | ||||||||| |||| |||||||| | Sbjct: 670 atgaactaaaagagcgctatggagtttctgatataactgtttcagtacaaaatgtggcat 729 Query: 474 ctcagctaggctacagcagcatcgactc 501 |||| || |||||||| ||||||||||| Sbjct: 730 ctcaactgggctacagtagcatcgactc 757
>dbj|AK064812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E05, full insert sequence Length = 1125 Score = 226 bits (114), Expect = 6e-56 Identities = 279/334 (83%) Strand = Plus / Plus Query: 8 cccatctacatcgtcgggacggactgcaatgccaagcgcaacatcgccaagctgctcgcc 67 ||||||||||||||||| || ||||| | ||||||||||||||| || ||||| || ||| Sbjct: 272 cccatctacatcgtcggaaccgactgtactgccaagcgcaacattgcaaagctccttgcc 331 Query: 68 aactccatcatttaccgctacctctgcagcgaggacctgctcgaggacgtcctcggcggc 127 || |||||||| ||||||||||||||||| || || ||||| ||||| || || || ||| Sbjct: 332 aattccatcatataccgctacctctgcagtgaagagctgctggaggatgttcttggaggc 391 Query: 128 aaggacgccctcgccgcgttccgggagtccgacgagaagggctacctcgaagtcgagacc 187 || || |||||| || |||||||| |||||| || |||||||||||||||||||| Sbjct: 392 aaagatgccctcaatgctttccgggaatccgacctcaacggctacctcgaagtcgagact 451 Query: 188 gaggggctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgcc 247 || || ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || Sbjct: 452 gaaggcctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgct 511 Query: 248 gtcatgaactccaccaacctggggctgctgaggcatggagtctccatctggatcgacgtc 307 ||||||||||| ||||| || ||||| |||||||||||||||||||| ||||| || | Sbjct: 512 gtcatgaactcaaccaatctagggctactgaggcatggagtctccatttggattgatatt 571 Query: 308 ccgcttgaattagccgtgaatgacatgttgaaga 341 || || ||||| | |||||||| |||||||||| Sbjct: 572 cctctggaattggtggtgaatgatatgttgaaga 605 Score = 111 bits (56), Expect = 2e-21 Identities = 127/148 (85%), Gaps = 2/148 (1%) Strand = Plus / Plus Query: 355 agctatttcagaccctgattccttttctcaggcaatg-gcaaagctccgtcagcgttatg 413 ||||| |||||||||||||||||||||| |||||||| ||| || |||| ||||| | | Sbjct: 610 agctacttcagaccctgattccttttctgaggcaatgagcagag-tccgacagcgacacg 668 Query: 414 atgatctgaaggagcgctatgcagtttctgatgttactgtttcactacagaatgtggctt 473 |||| || || |||||||||| |||||||||| | ||||||||| |||| |||||||| | Sbjct: 669 atgaactaaaagagcgctatggagtttctgatataactgtttcagtacaaaatgtggcat 728 Query: 474 ctcagctaggctacagcagcatcgactc 501 |||| || |||||||| ||||||||||| Sbjct: 729 ctcaactgggctacagtagcatcgactc 756
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 37 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 96 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 145192 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 145251 Query: 97 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 156 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 145252 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 145311 Query: 157 cgacgagaagggctacctcgaagtcgag 184 |||| || |||||||||||||||||| Sbjct: 145312 cgacctcaacggctacctcgaagtcgag 145339 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 194 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 253 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 145459 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 145518 Query: 254 aactccaccaa 264 ||||| ||||| Sbjct: 145519 aactcaaccaa 145529 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Plus Query: 269 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 328 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 145612 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 145671 Query: 329 gacatgttgaaga 341 || |||||||||| Sbjct: 145672 gatatgttgaaga 145684 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 106 gctcgaggacgtcctcggcggcaaggac 133 |||||| ||||||||||||||||||||| Sbjct: 21339016 gctcgacgacgtcctcggcggcaaggac 21338989 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 355 agctatttcagaccctgattccttttct 382 ||||| |||||||||||||||||||||| Sbjct: 145689 agctacttcagaccctgattccttttct 145716 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 465 atgtggcttctcagctaggctacagcagcatcgactc 501 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 146311 atgtggcatctcaactgggctacagtagcatcgactc 146347
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 37 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 96 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 142994 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 143053 Query: 97 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 156 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 143054 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 143113 Query: 157 cgacgagaagggctacctcgaagtcgag 184 |||| || |||||||||||||||||| Sbjct: 143114 cgacctcaacggctacctcgaagtcgag 143141 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 194 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 253 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 143261 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 143320 Query: 254 aactccaccaa 264 ||||| ||||| Sbjct: 143321 aactcaaccaa 143331 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Plus Query: 269 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 328 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 143414 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 143473 Query: 329 gacatgttgaaga 341 || |||||||||| Sbjct: 143474 gatatgttgaaga 143486 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 355 agctatttcagaccctgattccttttct 382 ||||| |||||||||||||||||||||| Sbjct: 143491 agctacttcagaccctgattccttttct 143518 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 465 atgtggcttctcagctaggctacagcagcatcgactc 501 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 144113 atgtggcatctcaactgggctacagtagcatcgactc 144149
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 37 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 96 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 93738 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 93797 Query: 97 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 156 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 93798 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 93857 Query: 157 cgacgagaagggctacctcgaagtcgag 184 |||| || |||||||||||||||||| Sbjct: 93858 cgacctcaacggctacctcgaagtcgag 93885 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 194 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 253 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 94005 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 94064 Query: 254 aactccaccaa 264 ||||| ||||| Sbjct: 94065 aactcaaccaa 94075 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Plus Query: 269 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 328 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 94158 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 94217 Query: 329 gacatgttgaaga 341 || |||||||||| Sbjct: 94218 gatatgttgaaga 94230 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 355 agctatttcagaccctgattccttttct 382 ||||| |||||||||||||||||||||| Sbjct: 94235 agctacttcagaccctgattccttttct 94262 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 465 atgtggcttctcagctaggctacagcagcatcgactc 501 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 94857 atgtggcatctcaactgggctacagtagcatcgactc 94893
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 95.6 bits (48), Expect = 1e-16 Identities = 123/148 (83%) Strand = Plus / Plus Query: 37 tgccaagcgcaacatcgccaagctgctcgccaactccatcatttaccgctacctctgcag 96 ||||||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||| Sbjct: 130122 tgccaagcgcaacattgcaaagctccttgccaattccatcatataccgctacctctgcag 130181 Query: 97 cgaggacctgctcgaggacgtcctcggcggcaaggacgccctcgccgcgttccgggagtc 156 || || ||||| ||||| || || || ||||| || |||||| || |||||||| || Sbjct: 130182 tgaagagctgctggaggatgttcttggaggcaaagatgccctcaatgctttccgggaatc 130241 Query: 157 cgacgagaagggctacctcgaagtcgag 184 |||| || |||||||||||||||||| Sbjct: 130242 cgacctcaacggctacctcgaagtcgag 130269 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 194 ctgaagcagctcacgtccatgggcagcctggtgctctgctgcggcgatggcgccgtcatg 253 ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 130389 ctgaaacagctcacctccatgggcagcctcgtgctttgctgtggggatggtgctgtcatg 130448 Query: 254 aactccaccaa 264 ||||| ||||| Sbjct: 130449 aactcaaccaa 130459 Score = 50.1 bits (25), Expect = 0.007 Identities = 61/73 (83%) Strand = Plus / Plus Query: 269 gggctgctgaggcatggagtctccatctggatcgacgtcccgcttgaattagccgtgaat 328 ||||| |||||||||||||||||||| ||||| || | || || ||||| | |||||| Sbjct: 130542 gggctactgaggcatggagtctccatttggattgatattcctctggaattggtggtgaat 130601 Query: 329 gacatgttgaaga 341 || |||||||||| Sbjct: 130602 gatatgttgaaga 130614 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 355 agctatttcagaccctgattccttttct 382 ||||| |||||||||||||||||||||| Sbjct: 130619 agctacttcagaccctgattccttttct 130646 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 465 atgtggcttctcagctaggctacagcagcatcgactc 501 ||||||| ||||| || |||||||| ||||||||||| Sbjct: 131241 atgtggcatctcaactgggctacagtagcatcgactc 131277
>dbj|AK062086.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G05, full insert sequence Length = 456 Score = 83.8 bits (42), Expect = 5e-13 Identities = 110/130 (84%), Gaps = 2/130 (1%) Strand = Plus / Plus Query: 373 ttccttttctcaggcaatg-gcaaagctccgtcagcgttatgatgatctgaaggagcgct 431 |||||||||| |||||||| ||| || |||| ||||| | ||||| || || ||||||| Sbjct: 1 ttccttttctgaggcaatgagcagag-tccgacagcgacacgatgaactaaaagagcgct 59 Query: 432 atgcagtttctgatgttactgtttcactacagaatgtggcttctcagctaggctacagca 491 ||| |||||||||| | ||||||||| |||| |||||||| ||||| || |||||||| | Sbjct: 60 atggagtttctgatataactgtttcagtacaaaatgtggcatctcaactgggctacagta 119 Query: 492 gcatcgactc 501 |||||||||| Sbjct: 120 gcatcgactc 129
>ref|NM_193526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 106 gctcgaggacgtcctcggcggcaaggac 133 |||||| ||||||||||||||||||||| Sbjct: 1047 gctcgacgacgtcctcggcggcaaggac 1074
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Minus Query: 106 gctcgaggacgtcctcggcggcaaggac 133 |||||| ||||||||||||||||||||| Sbjct: 60954 gctcgacgacgtcctcggcggcaaggac 60927
>dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025F12, full insert sequence Length = 1939 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 106 gctcgaggacgtcctcggcggcaaggac 133 |||||| ||||||||||||||||||||| Sbjct: 1162 gctcgacgacgtcctcggcggcaaggac 1189
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 121 cggcggcaaggacgccctcgccg 143 ||||||||||||||||||||||| Sbjct: 3291635 cggcggcaaggacgccctcgccg 3291657
>gb|AE007259.1| Sinorhizobium meliloti 1021 plasmid pSymA section 65 of 121 of the complete plasmid sequence Length = 10995 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 aacatcgccaagctgctcgcc 67 ||||||||||||||||||||| Sbjct: 4821 aacatcgccaagctgctcgcc 4801
>gb|AF228730.8| Homo sapiens chromosome 8 clones SCb-332a23, CTB-415D8 map p23.1, complete sequences Length = 295854 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 tctcagctaggctacagcagc 493 ||||||||||||||||||||| Sbjct: 110904 tctcagctaggctacagcagc 110924
>ref|XM_745769.1| Aspergillus fumigatus Af293 cytochrome P450 (Afu6g09730) partial mRNA Length = 1515 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 gcgcaacatcgccaagctgctcgcc 67 |||||| |||||||||||||||||| Sbjct: 714 gcgcaagatcgccaagctgctcgcc 738
>gb|AY838877.1| Aspergillus fumigatus putative gliotoxin biosynthetic gene cluster, complete sequence Length = 27768 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 gcgcaacatcgccaagctgctcgcc 67 |||||| |||||||||||||||||| Sbjct: 3346 gcgcaagatcgccaagctgctcgcc 3370
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 112 ggacgtcctcggcggcaaggacgccctcg 140 |||||||||||||||||| | |||||||| Sbjct: 4481680 ggacgtcctcggcggcaaagtcgccctcg 4481652
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 103 cctgctcgaggacgtcctcggcggc 127 ||||||||||| ||||||||||||| Sbjct: 3835103 cctgctcgaggtcgtcctcggcggc 3835127
>gb|AY398394.1| Danio rerio clone RK075A2E10 poly(rC) binding protein 2 (PCBP2) mRNA, complete cds Length = 2176 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tgcagtttctgatgttactg 452 |||||||||||||||||||| Sbjct: 1722 tgcagtttctgatgttactg 1741
>gb|U61955.1| Caenorhabditis elegans cosmid M03D4, complete sequence Length = 38750 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 ttactgtttcactacagaat 466 |||||||||||||||||||| Sbjct: 6208 ttactgtttcactacagaat 6189
>gb|BC021294.2| Homo sapiens calcium homeostasis endoplasmic reticulum protein, mRNA (cDNA clone MGC:29449 IMAGE:4053575), complete cds Length = 4105 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 3831 gtccatgggcagcctggtgc 3850
>ref|NM_006387.4| Homo sapiens calcium homeostasis endoplasmic reticulum protein (CHERP), mRNA Length = 4105 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 3831 gtccatgggcagcctggtgc 3850
>gb|AC127322.4| Mus musculus BAC clone RP23-238A8 from chromosome 6, complete sequence Length = 179698 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tctgatgttactgtttcact 459 |||||||||||||||||||| Sbjct: 121854 tctgatgttactgtttcact 121835
>gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, complete sequence Length = 170074 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 tgaatgacatgttgaagagc 343 |||||||||||||||||||| Sbjct: 150802 tgaatgacatgttgaagagc 150821
>gb|AC161059.4| Mus musculus BAC clone RP23-82L9 from chromosome 6, complete sequence Length = 294389 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 tctgatgttactgtttcact 459 |||||||||||||||||||| Sbjct: 285173 tctgatgttactgtttcact 285154
>gb|AC008764.9| Homo sapiens chromosome 19 clone CTD-3222D19, complete sequence Length = 172562 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 65380 gtccatgggcagcctggtgc 65361
>emb|CR602259.1| full-length cDNA clone CS0DC023YM19 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 2125 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 1912 gtccatgggcagcctggtgc 1931
>ref|NM_201192.1| Danio rerio poly(rC) binding protein 2 (pcbp2), mRNA Length = 2176 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tgcagtttctgatgttactg 452 |||||||||||||||||||| Sbjct: 1730 tgcagtttctgatgttactg 1749
>gb|U94836.2|HSU94836 Homo sapiens ERPROT 213-21 mRNA, complete cds Length = 3990 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 3748 gtccatgggcagcctggtgc 3767
>gb|AF536542.1| Homo sapiens SR-related CTD associated factor 6 (SCAF6) mRNA, complete cds Length = 4061 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 3813 gtccatgggcagcctggtgc 3832
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 cgcaacatcgccaagctgct 63 |||||||||||||||||||| Sbjct: 2686842 cgcaacatcgccaagctgct 2686823
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 ccctcgccgcgttccgggagtccg 158 |||||||||| ||||||||||||| Sbjct: 822571 ccctcgccgccttccgggagtccg 822594 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 ctgctcgaggacgtcctcggcggc 127 |||||||||||||| ||||||||| Sbjct: 404419 ctgctcgaggacgtgctcggcggc 404442
>dbj|AK026145.1| Homo sapiens cDNA: FLJ22492 fis, clone HRC11045, highly similar to HSU94836 Human ERPROT 213-21 mRNA Length = 1464 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 967 gtccatgggcagcctggtgc 948
>gb|BC066603.1| Danio rerio poly(rC) binding protein 2, mRNA (cDNA clone MGC:77206 IMAGE:6962205), complete cds Length = 2154 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tgcagtttctgatgttactg 452 |||||||||||||||||||| Sbjct: 1701 tgcagtttctgatgttactg 1720
>gb|BC045508.1| Danio rerio poly(rC) binding protein 2, mRNA (cDNA clone MGC:55964 IMAGE:3819411), complete cds Length = 2176 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tgcagtttctgatgttactg 452 |||||||||||||||||||| Sbjct: 1730 tgcagtttctgatgttactg 1749
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 caacatcgccaagctgctcgccaa 69 |||||||| ||||||||||||||| Sbjct: 266947 caacatcggcaagctgctcgccaa 266924
>dbj|AB209730.1| Homo sapiens mRNA for calcium homeostasis endoplasmic reticulum protein variant protein Length = 2472 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gtccatgggcagcctggtgc 227 |||||||||||||||||||| Sbjct: 2223 gtccatgggcagcctggtgc 2242
>dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45C16, TM0203, complete sequence Length = 110764 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 atgcagtttctgatgttactgttt 455 |||||||| ||||||||||||||| Sbjct: 51155 atgcagttgctgatgttactgttt 51132
>dbj|AB041839.1| Oryza sativa (indica cultivar-group) Hd1 gene, complete cds, strain:Kasalath Length = 4793 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cgtcctcggcggcaaggacg 134 |||||||||||||||||||| Sbjct: 1732 cgtcctcggcggcaaggacg 1751 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,754,294 Number of Sequences: 3902068 Number of extensions: 3754294 Number of successful extensions: 70414 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69701 Number of HSP's gapped (non-prelim): 710 length of query: 517 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 494 effective length of database: 17,143,297,704 effective search space: 8468789065776 effective search space used: 8468789065776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
