Clone Name | baak4j16 |
---|---|
Clone Library Name | barley_pub |
>gb|AY736122.1| Triticum aestivum chloroplast inositol phosphatase-like protein mRNA, complete cds; nuclear gene for chloroplast product Length = 909 Score = 963 bits (486), Expect = 0.0 Identities = 534/550 (97%) Strand = Plus / Plus Query: 23 tctcccatggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactgg 82 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 35 tctcccatggcggccatatcgtcgcttcctttcgctgcactgcgccgagcggccgactgg 94 Query: 83 aggccgtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 142 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 aggccgtcaacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 154 Query: 143 gctcggcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacct 202 ||||||||||| |||||||||||||||||||||||| || || |||||||| |||||| Sbjct: 155 gctcggcggggatcacgttcggtggtgcgctgcgtcgctacggctggtgatatcccacct 214 Query: 203 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 262 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 215 actgtggcagatacaaagatgaacttcctgaagtcatacaaacgtcctattccaagcatt 274 Query: 263 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 322 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 tacagtacagtcctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacc 334 Query: 323 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 394 Query: 383 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 442 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 395 gggtaccccagcaccgaggacagggatgccatcttcaagtcatacgtaacggcgttaaat 454 Query: 443 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 514 Query: 503 aatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 562 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 aatggtaacttgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 574 Query: 563 gatatatcag 572 |||||||||| Sbjct: 575 gatatatcag 584
>gb|AY377991.1| Triticum aestivum chloroplast-localized Ptr ToxA-binding protein1 (TaThf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1130 Score = 955 bits (482), Expect = 0.0 Identities = 533/550 (96%) Strand = Plus / Plus Query: 23 tctcccatggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactgg 82 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1 tctcccatggcggccatatcgtcgcttcctttcgctgcactgcgccgagcggccgactgg 60 Query: 83 aggccgtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 142 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aggccgtcaacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagg 120 Query: 143 gctcggcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacct 202 ||||||||||| |||||||||||||||||||||||| || || |||||||| |||||| Sbjct: 121 gctcggcggggatcacgttcggtggtgcgctgcgtcgctacggctggtgatatcccacct 180 Query: 203 actgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatt 262 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 181 actgtggcagatacaaagatgaacttcctgaagtcatacaaacgtcctattccaagcatt 240 Query: 263 tacagtacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacg 322 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tacagtacagtcctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacc 300 Query: 323 tatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaa 382 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 301 tatcagtatgatcctgtgtttgctcttggatttgtcactgtctatgaccagcttatggaa 360 Query: 383 gggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaat 442 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 361 gggtaccccagcaccgaggacagggatgccatcttcaagtcatacgtaacggcgttaaat 420 Query: 443 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaagatcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaa 480 Query: 503 aatggtaatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 562 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aatggtaacttgttagttgaattttcttccagagatggggaaatagagtccattctgaaa 540 Query: 563 gatatatcag 572 |||||||||| Sbjct: 541 gatatatcag 550
>gb|AY104484.1| Zea mays PCO107854 mRNA sequence Length = 842 Score = 432 bits (218), Expect = e-118 Identities = 463/545 (84%), Gaps = 6/545 (1%) Strand = Plus / Plus Query: 28 catggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggcc 87 |||||||||||||||||| ||||| ||||| || |||||| |||| ||||| |||||||| Sbjct: 128 catggcggccatatcgtcacttcccttcgcggcgctgcgcggagccgccgagtggaggcc 187 Query: 88 gtcgacggcgactgccgcggtgagcgtctccggtggcgtcatgctcaacgcgagggctcg 147 |||| || || | || || ||||||||| | |||| |||||| ||||||| |||| Sbjct: 188 gtcgtcgacggcggcggc------cgtctccggcgccgtcgtgctcagcgcgaggtctcg 241 Query: 148 gcggggctcacgttcggtggtgcgctgcgtcatcactgccggtgatattccacctactgt 207 |||||||| || ||||||||||| || ||| ||| | |||||| | ||||| ||||| Sbjct: 242 ccggggctcgcgctcggtggtgcgatgtgtcgccacgacgggtgatgtcccacccactgt 301 Query: 208 ggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattccaagcatttacag 267 ||||| ||||| |||||||||| ||||| |||||||| || || |||||||||||||| Sbjct: 302 cgcagaaacaaaactgaacttccttaagtcatacaaacgcccaatcccaagcatttacag 361 Query: 268 tacagttctacaagaacttttggtgcagcaacatctgatgagatacaaaagtacgtatca 327 | |||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| Sbjct: 362 tgcagtcttacaagaacttttggtgcagcaacacctgatgagatacaaaaaaacctatca 421 Query: 328 gtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagggta 387 ||||||| |||||||||||||||| || ||||| |||||||| ||||| ||||||||||| Sbjct: 422 gtatgatgctgtgtttgctcttggcttcgtcactgtctatgatcagctcatggaagggta 481 Query: 388 ccccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaatgaaga 447 ||||||||| ||||||| |||| ||||||||||| ||||| |||| || ||||||||||| Sbjct: 482 ccccagcaatgaggacaaggattccatcttcaaggcatatataacagcattaaatgaaga 541 Query: 448 tcctgagcaatacagggctgatgcacaaaggatggaagagtgggcacgctcacaaaatgg 507 |||||| |||||||| |||||||||| || |||||||||||||||||| || || || || Sbjct: 542 tcctgatcaatacagagctgatgcactaaagatggaagagtgggcacgttcccagaacgg 601 Query: 508 taatctgttagttgaattttcttccagagatggggaaatagagtccattctgaaagatat 567 || | |||||||| ||||||||||||||||| ||||| ||| | |||||||||||||| Sbjct: 602 tagttccttagttgatttttcttccagagatggagaaatcgaggctattctgaaagatat 661 Query: 568 atcag 572 ||||| Sbjct: 662 atcag 666
>ref|XM_478693.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1153 Score = 406 bits (205), Expect = e-110 Identities = 388/449 (86%) Strand = Plus / Plus Query: 124 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 183 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| ||| Sbjct: 198 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 257 Query: 184 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 243 || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct: 258 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 317 Query: 244 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 303 |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 318 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 377 Query: 304 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 363 |||||||||||||| || ||||| |||||| | |||||||||||||| ||||| ||||| Sbjct: 378 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 437 Query: 364 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaagtc 423 ||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| | Sbjct: 438 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaaagc 497 Query: 424 atatgtaacggcgttaaatgaagatcctgagcaatacagggctgatgcacaaaggatgga 483 |||| |||| |||||||| ||||| |||||||||||||| ||||| ||||||| |||||| Sbjct: 498 atatataacagcgttaaacgaagaccctgagcaatacagagctgacgcacaaaagatgga 557 Query: 484 agagtgggcacgctcacaaaatggtaatctgttagttgaattttcttccagagatgggga 543 ||||||||| || || || ||||||||| |||||||| ||||| |||| |||||| || Sbjct: 558 agagtgggctcgttcccagaatggtaattctttagttgagttttcatccaaagatggaga 617 Query: 544 aatagagtccattctgaaagatatatcag 572 ||||||| |||||||||||||||| |||| Sbjct: 618 aatagaggccattctgaaagatatttcag 646 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 29 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 88 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 100 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 159 Query: 89 tcgacggcg 97 ||||||||| Sbjct: 160 tcgacggcg 168
>gb|AY224446.1| Oryza sativa (japonica cultivar-group) isolate 23045 inositol phosphatase-like protein mRNA, complete cds Length = 864 Score = 406 bits (205), Expect = e-110 Identities = 388/449 (86%) Strand = Plus / Plus Query: 124 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 183 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| ||| Sbjct: 99 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 158 Query: 184 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 243 || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct: 159 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 218 Query: 244 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 303 |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 219 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 278 Query: 304 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 363 |||||||||||||| || ||||| |||||| | |||||||||||||| ||||| ||||| Sbjct: 279 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 338 Query: 364 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaagtc 423 ||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| | Sbjct: 339 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaaagc 398 Query: 424 atatgtaacggcgttaaatgaagatcctgagcaatacagggctgatgcacaaaggatgga 483 |||| |||| |||||||| ||||| |||||||||||||| ||||| ||||||| |||||| Sbjct: 399 atatataacagcgttaaacgaagaccctgagcaatacagagctgacgcacaaaagatgga 458 Query: 484 agagtgggcacgctcacaaaatggtaatctgttagttgaattttcttccagagatgggga 543 ||||||||| || || || ||||||||| |||||||| ||||| |||| |||||| || Sbjct: 459 agagtgggctcgttcccagaatggtaattctttagttgagttttcatccaaagatggaga 518 Query: 544 aatagagtccattctgaaagatatatcag 572 ||||||| |||||||||||||||| |||| Sbjct: 519 aatagaggccattctgaaagatatttcag 547 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 29 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 88 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 1 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 60 Query: 89 tcgacggcg 97 ||||||||| Sbjct: 61 tcgacggcg 69
>dbj|AK064914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M13, full insert sequence Length = 1152 Score = 406 bits (205), Expect = e-110 Identities = 388/449 (86%) Strand = Plus / Plus Query: 124 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtcatcac 183 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| ||| Sbjct: 197 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtcgccac 256 Query: 184 tgccggtgatattccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaa 243 || || ||| ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct: 257 ggcgggcgatgttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaa 316 Query: 244 acgtcctattccaagcatttacagtacagttctacaagaacttttggtgcagcaacatct 303 |||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 317 gcgtcctatcctaagcatttacagtacagttctacaagaacttttggtacagcaacatct 376 Query: 304 gatgagatacaaaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgt 363 |||||||||||||| || ||||| |||||| | |||||||||||||| ||||| ||||| Sbjct: 377 gatgagatacaaaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgt 436 Query: 364 ctatgaccagcttatggaagggtaccccagcaacgaggacagggatgccatcttcaagtc 423 ||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| | Sbjct: 437 ctatgaccaactcatggaagggtaccctagcaatgaggatagggatgcaatcttcaaagc 496 Query: 424 atatgtaacggcgttaaatgaagatcctgagcaatacagggctgatgcacaaaggatgga 483 |||| |||| |||||||| ||||| |||||||||||||| ||||| ||||||| |||||| Sbjct: 497 atatataacagcgttaaacgaagaccctgagcaatacagagctgacgcacaaaagatgga 556 Query: 484 agagtgggcacgctcacaaaatggtaatctgttagttgaattttcttccagagatgggga 543 ||||||||| || || || ||||||||| |||||||| ||||| |||| |||||| || Sbjct: 557 agagtgggctcgttcccagaatggtaattctttagttgagttttcatccaaagatggaga 616 Query: 544 aatagagtccattctgaaagatatatcag 572 ||||||| |||||||||||||||| |||| Sbjct: 617 aatagaggccattctgaaagatatttcag 645 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Plus Query: 29 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 88 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 99 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 158 Query: 89 tcgacggcg 97 ||||||||| Sbjct: 159 tcgacggcg 167
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 287 bits (145), Expect = 2e-74 Identities = 238/269 (88%) Strand = Plus / Minus Query: 195 ttccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattc 254 ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | Sbjct: 22268329 ttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcc 22268270 Query: 255 caagcatttacagtacagttctacaagaacttttggtgcagcaacatctgatgagataca 314 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 22268269 taagcatttacagtacagttctacaagaacttttggtacagcaacatctgatgagataca 22268210 Query: 315 aaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagc 374 ||| || ||||| |||||| | |||||||||||||| ||||| |||||||||||||| | Sbjct: 22268209 aaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaac 22268150 Query: 375 ttatggaagggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacgg 434 | |||||||||||||| ||||| ||||| |||||||| |||||||| ||||| |||| | Sbjct: 22268149 tcatggaagggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacag 22268090 Query: 435 cgttaaatgaagatcctgagcaatacagg 463 ||||||| ||||| ||||||||||||||| Sbjct: 22268089 cgttaaacgaagaccctgagcaatacagg 22268061 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 464 gctgatgcacaaaggatggaagagtgggcacgctcacaaaatggtaatctgttagttgaa 523 ||||| ||||||| ||||||||||||||| || || || ||||||||| |||||||| Sbjct: 22267617 gctgacgcacaaaagatggaagagtgggctcgttcccagaatggtaattctttagttgag 22267558 Query: 524 ttttcttccagagatggggaaatagagtccattctgaaagatatatcag 572 ||||| |||| |||||| ||||||||| |||||||||||||||| |||| Sbjct: 22267557 ttttcatccaaagatggagaaatagaggccattctgaaagatatttcag 22267509 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 29 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 88 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 22269475 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 22269416 Query: 89 tcgacggcg 97 ||||||||| Sbjct: 22269415 tcgacggcg 22269407 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 124 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtc 178 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| Sbjct: 22269377 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtc 22269323
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 287 bits (145), Expect = 2e-74 Identities = 238/269 (88%) Strand = Plus / Minus Query: 195 ttccacctactgtggcagatacaaagatgaacttcctgaagtcgtacaaacgtcctattc 254 ||||||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||| | Sbjct: 73575 ttccacccactgtcgcagaaacaaagatgaattttctcaagtcatacaagcgtcctatcc 73516 Query: 255 caagcatttacagtacagttctacaagaacttttggtgcagcaacatctgatgagataca 314 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 73515 taagcatttacagtacagttctacaagaacttttggtacagcaacatctgatgagataca 73456 Query: 315 aaagtacgtatcagtatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagc 374 ||| || ||||| |||||| | |||||||||||||| ||||| |||||||||||||| | Sbjct: 73455 aaacaacatatcaatatgatgcggtgtttgctcttggttttgtgaccgtctatgaccaac 73396 Query: 375 ttatggaagggtaccccagcaacgaggacagggatgccatcttcaagtcatatgtaacgg 434 | |||||||||||||| ||||| ||||| |||||||| |||||||| ||||| |||| | Sbjct: 73395 tcatggaagggtaccctagcaatgaggatagggatgcaatcttcaaagcatatataacag 73336 Query: 435 cgttaaatgaagatcctgagcaatacagg 463 ||||||| ||||| ||||||||||||||| Sbjct: 73335 cgttaaacgaagaccctgagcaatacagg 73307 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 464 gctgatgcacaaaggatggaagagtgggcacgctcacaaaatggtaatctgttagttgaa 523 ||||| ||||||| ||||||||||||||| || || || ||||||||| |||||||| Sbjct: 72863 gctgacgcacaaaagatggaagagtgggctcgttcccagaatggtaattctttagttgag 72804 Query: 524 ttttcttccagagatggggaaatagagtccattctgaaagatatatcag 572 ||||| |||| |||||| ||||||||| |||||||||||||||| |||| Sbjct: 72803 ttttcatccaaagatggagaaatagaggccattctgaaagatatttcag 72755 Score = 89.7 bits (45), Expect = 9e-15 Identities = 63/69 (91%) Strand = Plus / Minus Query: 29 atggcggccatatcgtcgcttccgttcgctgcactgcgccgagcggccgactggaggccg 88 |||||||||||||| |||||||| ||||| ||||||||||| || |||||||| |||||| Sbjct: 74721 atggcggccatatcttcgcttcccttcgcggcactgcgccgggccgccgactgcaggccg 74662 Query: 89 tcgacggcg 97 ||||||||| Sbjct: 74661 tcgacggcg 74653 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 124 cgtcatgctcaacgcgagggctcggcggggctcacgttcggtggtgcgctgcgtc 178 |||| |||||| || |||| | |||||||| || || |||||||||||||||||| Sbjct: 74623 cgtcgtgctcagcgtgaggccccggcgggggtcgcgctcggtggtgcgctgcgtc 74569
>gb|AY342161.1| Solanum tuberosum cultivar Kennebec light-regulated chloroplast-localized protein (Thf1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1281 Score = 79.8 bits (40), Expect = 9e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagggtac 388 |||||||| |||||||| || || ||||| || || ||||| || |||||||| || ||| Sbjct: 412 tatgatcccgtgtttgccctaggttttgttactgtgtatgatcaacttatggagggctac 471 Query: 389 cccagcaacgaggacagggatgccatcttcaagtcatatgtaacggcgttaaatgaagat 448 || || | |||||| | ||||||||||||| ||||| || |||| |||| || ||| Sbjct: 472 ccaagtgaagaggaccgtaatgccatcttcaaagcatatatagaggcgctaaaggaggat 531 Query: 449 cctgagcaatacagggctgatgcacaaa 476 |||||||||||||| ||||||||||||| Sbjct: 532 cctgagcaatacagagctgatgcacaaa 559
>ref|NM_127659.1| Arabidopsis thaliana THF1 AT2G20890 (THF1) mRNA, complete cds Length = 1246 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence Length = 129667 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 43483 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 43428
>gb|AY081596.1| Arabidopsis thaliana unknown protein (At2g20890) mRNA, complete cds Length = 953 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 322 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 377
>gb|AY062799.1| Arabidopsis thaliana Unknown protein (At2g20890; F5H14.14) mRNA, complete cds Length = 1143 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 432 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 487
>emb|BX818901.1|CNS0A8Y0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1114 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 419 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 474
>emb|BX820020.1|CNS0A8FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1131 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 397 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 452
>gb|AY087394.1| Arabidopsis thaliana clone 34875 mRNA, complete sequence Length = 1246 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 437 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 492
>gb|AY899908.1| Arabidopsis thaliana chloroplast thylakoid formation 1 (THF1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1245 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctcttggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct: 436 tatgatcctgtttttgcccttggatttgtcactgtatatgatcagctcatggaagg 491
>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence Length = 186314 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 400 ggacagggatgccatcttcaagtc 423 |||||||||||||||||||||||| Sbjct: 44823 ggacagggatgccatcttcaagtc 44800
>gb|AY190958.1| Drosophila virilis clone DVIF01_45_J10 (D1457) genomic sequence Length = 44255 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 107 gtgagcgtctccggtggcgtca 128 |||||||||||||||||||||| Sbjct: 10405 gtgagcgtctccggtggcgtca 10384
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 cccatggcggccatatcgtcgc 47 |||||||||||||||||||||| Sbjct: 2996924 cccatggcggccatatcgtcgc 2996945
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 101 gccgcggtgagcgtctccggtggcg 125 ||||||| ||||||||||||||||| Sbjct: 2649540 gccgcggcgagcgtctccggtggcg 2649516
>emb|BX820185.1|CNS0A8J4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1158 Score = 42.1 bits (21), Expect = 2.0 Identities = 49/57 (85%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 329 tatgatcctgtgtttgctct-tggatttgtcaccgtctatgaccagcttatggaagg 384 ||||||||||| ||||| | |||||||||||| || ||||| ||||| |||||||| Sbjct: 420 tatgatcctgtttttgccccgtggatttgtcactgtatatgatcagctcatggaagg 476
>ref|NM_103989.2| Arabidopsis thaliana structural molecule AT1G51110 mRNA, complete cds Length = 1437 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 1116 ccatcttcaagtcatatgta 1097
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cgtcgacggcgactgccgcg 106 |||||||||||||||||||| Sbjct: 948933 cgtcgacggcgactgccgcg 948914
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cgtcgacggcgactgccgcg 106 |||||||||||||||||||| Sbjct: 247276 cgtcgacggcgactgccgcg 247295
>gb|AC158576.3| Mus musculus chromosome 7, clone RP24-252B21, complete sequence Length = 181195 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 528 cttccagagatggggaaatagagt 551 ||||| |||||||||||||||||| Sbjct: 54503 cttcctgagatggggaaatagagt 54480
>gb|AC092676.2| Homo sapiens BAC clone RP11-641E23 from 7, complete sequence Length = 118035 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 aaggatggaagagtgggcac 494 |||||||||||||||||||| Sbjct: 48045 aaggatggaagagtgggcac 48026
>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence Length = 206515 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 ggacagggatgccatcttcaagtc 423 |||||||| ||||||||||||||| Sbjct: 7961 ggacagggctgccatcttcaagtc 7938
>gb|AC163450.5| Mus musculus chromosome 1, clone RP23-209F20, complete sequence Length = 182102 Score = 40.1 bits (20), Expect = 7.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 445 agatcctgagcaatacagg-gctgatgc 471 ||||||||||||||||||| |||||||| Sbjct: 102350 agatcctgagcaatacaggtgctgatgc 102377
>emb|AL355315.18| Human DNA sequence from clone RP11-548K23 on chromosome 10 Contains the ANKRD2 gene for ankyrin repeat domain 2 (stretch responsive muscle), six novel genes, the gene for phosphatidylinositol 4-kinase type II (PI4KII) and four CpG islands, complete sequence Length = 157193 Score = 40.1 bits (20), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 11 agcccgaggnactctcccatggc 33 ||||||||| ||||||||||||| Sbjct: 12004 agcccgagggactctcccatggc 11982
>gb|AC158781.4| Mus musculus chromosome 7, clone RP23-264H19, complete sequence Length = 208419 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cttccagagatggggaaatagagt 551 |||||||||||||| ||||||||| Sbjct: 194595 cttccagagatgggaaaatagagt 194618
>gb|AC100322.8| Mus musculus chromosome 7, clone RP23-124O24, complete sequence Length = 219314 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cttccagagatggggaaatagagt 551 |||||||||||||| ||||||||| Sbjct: 15865 cttccagagatgggaaaatagagt 15888
>gb|AY254102.1| Streptomyces castaneoglobisporus MelC gene, complete cds Length = 381 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cgacggcgactgccgcggtgagcg 113 |||||||| ||||||||||||||| Sbjct: 49 cgacggcggctgccgcggtgagcg 26
>gb|AC008743.9| Homo sapiens chromosome 19 clone CTD-2560K21, complete sequence Length = 192097 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 cagagatggggaaatagagt 551 |||||||||||||||||||| Sbjct: 145092 cagagatggggaaatagagt 145111
>gb|AC093897.3| Homo sapiens BAC clone RP11-721G13 from 4, complete sequence Length = 163271 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 agatggggaaatagagtcca 554 |||||||||||||||||||| Sbjct: 97557 agatggggaaatagagtcca 97576
>gb|AC024243.8| Homo sapiens BAC clone RP11-528I4 from 4, complete sequence Length = 163857 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 agagatggggaaatagagtccatt 556 |||||||||||||||||| ||||| Sbjct: 118768 agagatggggaaatagagaccatt 118745
>gb|AC083909.20|AC083909 Mus musculus 1 BAC RP23-424A2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204857 Score = 40.1 bits (20), Expect = 7.8 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 445 agatcctgagcaatacagg-gctgatgc 471 ||||||||||||||||||| |||||||| Sbjct: 4058 agatcctgagcaatacaggtgctgatgc 4085
>emb|BX813641.1|CNS0AC3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZA12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1271 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 1075 ccatcttcaagtcatatgta 1056
>emb|BX814945.1|CNS0ABC0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZF08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1308 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 1085 ccatcttcaagtcatatgta 1066
>gb|AC079828.4|AC079828 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence Length = 45337 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 18104 ccatcttcaagtcatatgta 18123
>gb|BT005347.1| Arabidopsis thaliana At1g51115 mRNA, complete cds Length = 1230 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 1084 ccatcttcaagtcatatgta 1065
>gb|AY087688.1| Arabidopsis thaliana clone 37689 mRNA, complete sequence Length = 1439 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 1117 ccatcttcaagtcatatgta 1098
>dbj|AK118545.1| Arabidopsis thaliana At1g51110 mRNA for unknown protein, complete cds, clone: RAFL19-77-I08 Length = 1333 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccatcttcaagtcatatgta 430 |||||||||||||||||||| Sbjct: 1088 ccatcttcaagtcatatgta 1069
>emb|AJ131520.2|TMA131520 Tropaeolum majus mRNA for alpha-D-xylosidase Length = 3151 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 acaaagatgaacttcctgaa 234 |||||||||||||||||||| Sbjct: 2459 acaaagatgaacttcctgaa 2478
>gb|AY262106.1| Newcastle disease virus AF2240 large protein (L) mRNA, complete cds Length = 6615 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gaggacagggatgccatctt 417 |||||||||||||||||||| Sbjct: 4996 gaggacagggatgccatctt 5015
>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence Length = 185283 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 ggacagggatgccatcttcaagtc 423 |||||||| ||||||||||||||| Sbjct: 66251 ggacagggctgccatcttcaagtc 66274
>emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-889B13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184039 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ttttggtgcagcaacatctg 304 |||||||||||||||||||| Sbjct: 72474 ttttggtgcagcaacatctg 72493
>gb|AC099701.4| Mus musculus chromosome 7, clone RP23-184F6, complete sequence Length = 226167 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 cttccagagatggggaaatagagt 551 ||||| |||||||||||||||||| Sbjct: 11225 cttcctgagatggggaaatagagt 11248
>emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2200A16 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 140073 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ttttggtgcagcaacatctg 304 |||||||||||||||||||| Sbjct: 97330 ttttggtgcagcaacatctg 97349 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,256,047 Number of Sequences: 3902068 Number of extensions: 4256047 Number of successful extensions: 87287 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 87080 Number of HSP's gapped (non-prelim): 207 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)