ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4j12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466439.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
3dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5dbj|AK062460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6emb|Z48625.1|HVGRP2 H.vulgare mRNA for glycine rich protein 72 1e-09
7gb|AY106990.1| Zea mays PCO149295 mRNA sequence 54 2e-04
8gb|AC147618.3| Mus musculus chromosome 19 clone RP24-245M20, com... 46 0.057
9gb|AC128739.4| Mus musculus BAC clone RP24-168G14 from chromosom... 46 0.057
10gb|AY072283.1| Lilium hybrid cv. 'Star Gazer' glycine-rich prote... 46 0.057
11gb|AF235096.5| Homo sapiens chromosome 8 clone RP11-562D1 map q2... 44 0.22
12gb|BC112808.1| Bos taurus cDNA clone MGC:137553 IMAGE:8171186, c... 44 0.22
13gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, com... 44 0.22
14gb|AC135166.8| Homo sapiens chromosome 8, clone CTD-2552K11, com... 44 0.22
15gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complet... 44 0.22
16gb|AC119911.10| Mus musculus chromosome 1, clone RP24-242P4, com... 42 0.89
17gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome... 42 0.89
18gb|AC165255.2| Mus musculus BAC clone RP23-239B8 from chromosome... 42 0.89
19emb|BX927069.11| Zebrafish DNA sequence from clone DKEY-24C22 in... 42 0.89
20gb|AC156275.6| Mus musculus 10 BAC RP24-192F16 (Roswell Park Can... 42 0.89
21gb|AC155812.2| Mus musculus BAC clone RP24-139G23 from 12, compl... 42 0.89
22emb|CT571268.7| Mouse DNA sequence from clone RP23-275M21 on chr... 42 0.89
23emb|AL356799.3|CNS05TDH Human chromosome 14 DNA sequence BAC R-6... 42 0.89
24gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Can... 42 0.89
25gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 3.5
26gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete... 40 3.5
27gb|AC125276.18| Mus musculus chromosome 10, clone RP24-175N4, co... 40 3.5
28gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 3.5
29gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome... 40 3.5
30emb|CR854949.19| Zebrafish DNA sequence from clone BUSM1-225A24,... 40 3.5
31emb|X63756.1|SVPEPCAA S.vulgare PEPC gene 40 3.5
32gb|AC116017.6| Homo sapiens chromosome 18, clone RP11-57J16, com... 40 3.5
33emb|Z98254.1|DMC114E2 Drosophila melanogaster cosmid 114E2 40 3.5
34emb|CR614636.1| full-length cDNA clone CS0DL009YD05 of B cells (... 40 3.5
35dbj|AK093670.1| Homo sapiens cDNA FLJ36351 fis, clone THYMU2007146 40 3.5
36gb|AC087320.16| Homo sapiens 12p BAC RP11-818E15 (Roswell Park C... 40 3.5
37gb|AC009872.8| Homo sapiens chromosome 8, clone RP11-108P12, com... 40 3.5
38gb|BC011000.2| Homo sapiens cell division cycle associated 5, mR... 40 3.5
39ref|NM_080668.2| Homo sapiens cell division cycle associated 5 (... 40 3.5
40gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 ... 40 3.5
41dbj|AP003068.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.5
42gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, co... 40 3.5
43gb|AC006618.1| Caenorhabditis elegans cosmid C45B2, complete seq... 40 3.5
44emb|AL832526.1|HSM803835 Homo sapiens mRNA; cDNA DKFZp547C0716 (... 40 3.5
45emb|AL627345.11| Mouse DNA sequence from clone RP23-169E7 on chr... 40 3.5 
>ref|XM_466439.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 775

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 42  tgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccgggcggaggt 97
           |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 400 tgccgctgctgcgcgagccccgacgagatcccggagcccatgtaccgcccggaggt 455
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                        
Query: 42       tgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccgggcggaggt 97
                |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 22646198 tgccgctgctgcgcgagccccgacgagatcccggagcccatgtaccgcccggaggt 22646253
to top
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056I22
          Length = 147728

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                     
Query: 42    tgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccgggcggaggt 97
             |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 94009 tgccgctgctgcgcgagccccgacgagatcccggagcccatgtaccgcccggaggt 94064
to top
>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBb0046O12
          Length = 128223

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                    
Query: 42   tgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccgggcggaggt 97
            |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 4994 tgccgctgctgcgcgagccccgacgagatcccggagcccatgtaccgcccggaggt 5049
to top
>dbj|AK062460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D05, full
           insert sequence
          Length = 775

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                   
Query: 42  tgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccgggcggaggt 97
           |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||
Sbjct: 400 tgccgctgctgcgcgagccccgacgagatcccggagcccatgtaccgcccggaggt 455
to top
>emb|Z48625.1|HVGRP2 H.vulgare mRNA for glycine rich protein
          Length = 433

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                       
Query: 38  tggctgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccgggcggaggt 97
           ||||||||||||||| ||  || | |||||| |||| |||||||||||||| ||||||||
Sbjct: 126 tggctgccgctgctgtgcgcgcgcggacgaggtccctgagcccatgtaccgcgcggaggt 185

                   
Query: 98  ccgcaact 105
           ||||||||
Sbjct: 186 ccgcaact 193
to top
>gb|AY106990.1| Zea mays PCO149295 mRNA sequence
          Length = 778

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 34  atggtggctgccgctgctgcgcaagccccgacgagatcccggagcccatgtaccg 88
           |||| |||||||| |||||| |  || |||||||| |||||||||||||||||||
Sbjct: 314 atggcggctgccggtgctgctcgcgcgccgacgaggtcccggagcccatgtaccg 368
to top
>gb|AC147618.3| Mus musculus chromosome 19 clone RP24-245M20, complete sequence
          Length = 172863

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 181    tgcatgtatgcatgtacgtatacgtacacac 211
              |||||||||||||||| |||||| |||||||
Sbjct: 147683 tgcatgtatgcatgtatgtatacatacacac 147653
to top
>gb|AC128739.4| Mus musculus BAC clone RP24-168G14 from chromosome 19, complete
             sequence
          Length = 195342

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 181   tgcatgtatgcatgtacgtatacgtacacac 211
             |||||||||||||||| |||||| |||||||
Sbjct: 47591 tgcatgtatgcatgtatgtatacatacacac 47561
to top
>gb|AY072283.1| Lilium hybrid cv. 'Star Gazer' glycine-rich protein mRNA, complete
           cds
          Length = 639

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 34  atggtggctgccgctgctgcgcaagccccgacgagatcccgga 76
           ||||||||||||| ||||||||   |||||| |||||||||||
Sbjct: 335 atggtggctgccggtgctgcgcccaccccgatgagatcccgga 377
to top
>gb|AF235096.5| Homo sapiens chromosome 8 clone RP11-562D1 map q24.13, complete
             sequence
          Length = 199966

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 180   gtgcatgtatgcatgtacgtat 201
             ||||||||||||||||||||||
Sbjct: 23896 gtgcatgtatgcatgtacgtat 23917
to top
>gb|BC112808.1| Bos taurus cDNA clone MGC:137553 IMAGE:8171186, complete cds
          Length = 2956

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 24  gggcacgggcatggtggctgcc 45
           ||||||||||||||||||||||
Sbjct: 759 gggcacgggcatggtggctgcc 780
to top
>gb|AC132874.10| Mus musculus chromosome 7, clone RP24-215K5, complete sequence
          Length = 154316

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 181   tgcatgtatgcatgtacgtata 202
             ||||||||||||||||||||||
Sbjct: 63214 tgcatgtatgcatgtacgtata 63235
to top
>gb|AC135166.8| Homo sapiens chromosome 8, clone CTD-2552K11, complete sequence
          Length = 120301

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 180   gtgcatgtatgcatgtacgtat 201
             ||||||||||||||||||||||
Sbjct: 38924 gtgcatgtatgcatgtacgtat 38945
to top
>gb|AC149603.5| Mus musculus BAC clone RP23-479L9 from 7, complete sequence
          Length = 177637

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 181    tgcatgtatgcatgtacgtata 202
              ||||||||||||||||||||||
Sbjct: 129868 tgcatgtatgcatgtacgtata 129847
to top
>gb|AC119911.10| Mus musculus chromosome 1, clone RP24-242P4, complete sequence
          Length = 175107

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   tgcatgtatgcatgtacgtat 201
             |||||||||||||||||||||
Sbjct: 74651 tgcatgtatgcatgtacgtat 74671



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tgcatgtatgcatgtacgta 200
             ||||||||||||||||||||
Sbjct: 74563 tgcatgtatgcatgtacgta 74582
to top
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence
          Length = 170866

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 202    acgtacacactgcacagttat 222
              |||||||||||||||||||||
Sbjct: 104420 acgtacacactgcacagttat 104440
to top
>gb|AC165255.2| Mus musculus BAC clone RP23-239B8 from chromosome 13, complete sequence
          Length = 205903

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    acgtacacactgcacagttat 222
              |||||||||||||||||||||
Sbjct: 192127 acgtacacactgcacagttat 192107
to top
>emb|BX927069.11| Zebrafish DNA sequence from clone DKEY-24C22 in linkage group 23,
             complete sequence
          Length = 162588

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 183   catgtatgcatgtacgtatacgtacacac 211
             |||||||||||||| |||||| |||||||
Sbjct: 95317 catgtatgcatgtatgtatacatacacac 95289
to top
>gb|AC156275.6| Mus musculus 10 BAC RP24-192F16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 160348

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    tgcatgtatgcatgtacgtat 201
              |||||||||||||||||||||
Sbjct: 115436 tgcatgtatgcatgtacgtat 115416
to top
>gb|AC155812.2| Mus musculus BAC clone RP24-139G23 from 12, complete sequence
          Length = 153018

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 177    taggtgcatgtatgcatgtacgtat 201
              |||||||||||||||||||| ||||
Sbjct: 134174 taggtgcatgtatgcatgtatgtat 134198
to top
>emb|CT571268.7| Mouse DNA sequence from clone RP23-275M21 on chromosome 12, complete
             sequence
          Length = 178441

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 177   taggtgcatgtatgcatgtacgtat 201
             |||||||||||||||||||| ||||
Sbjct: 71551 taggtgcatgtatgcatgtatgtat 71527
to top
>emb|AL356799.3|CNS05TDH Human chromosome 14 DNA sequence BAC R-63P7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160168

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   tgcatgtatgcatgtacgtat 201
             |||||||||||||||||||||
Sbjct: 79904 tgcatgtatgcatgtacgtat 79884
to top
>gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120000

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   gtgcatgtatgcatgtacgta 200
             |||||||||||||||||||||
Sbjct: 92573 gtgcatgtatgcatgtacgta 92553
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      ggctgccgctgctgcgcaag 58
               ||||||||||||||||||||
Sbjct: 2837063 ggctgccgctgctgcgcaag 2837044
to top
>gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete sequence
          Length = 186002

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tgcatgtatgcatgtacgta 200
             ||||||||||||||||||||
Sbjct: 51776 tgcatgtatgcatgtacgta 51795
to top
>gb|AC125276.18| Mus musculus chromosome 10, clone RP24-175N4, complete sequence
          Length = 143671

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    gtgcatgtatgcatgtacgt 199
              ||||||||||||||||||||
Sbjct: 121377 gtgcatgtatgcatgtacgt 121396
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      ggctgccgctgctgcgcaag 58
               ||||||||||||||||||||
Sbjct: 2609296 ggctgccgctgctgcgcaag 2609277
to top
>gb|AC140196.3| Mus musculus BAC clone RP24-267C3 from chromosome 7, complete
            sequence
          Length = 183537

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 180  gtgcatgtatgcatgtacgtatac 203
            |||||||||||||||| |||||||
Sbjct: 7931 gtgcatgtatgcatgttcgtatac 7908
to top
>emb|CR854949.19| Zebrafish DNA sequence from clone BUSM1-225A24, complete sequence
          Length = 83801

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 184   atgtatgcatgtacgtatacgtacacac 211
             ||||||||||||| ||||| ||||||||
Sbjct: 71694 atgtatgcatgtatgtatatgtacacac 71667
to top
>emb|X63756.1|SVPEPCAA S.vulgare PEPC gene
          Length = 7071

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  tgcatgtatgcatgtacgta 200
            ||||||||||||||||||||
Sbjct: 1473 tgcatgtatgcatgtacgta 1454
to top
>gb|AC116017.6| Homo sapiens chromosome 18, clone RP11-57J16, complete sequence
          Length = 181626

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    catgtatgcatgtacgtata 202
              ||||||||||||||||||||
Sbjct: 102620 catgtatgcatgtacgtata 102601
to top
>emb|Z98254.1|DMC114E2 Drosophila melanogaster cosmid 114E2
          Length = 37467

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tgcatgtatgcatgtacgta 200
             ||||||||||||||||||||
Sbjct: 15060 tgcatgtatgcatgtacgta 15079
to top
>emb|CR614636.1| full-length cDNA clone CS0DL009YD05 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 2478

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   tggctgccgctgctgcgcaagccc 61
            |||||||||||||||| |||||||
Sbjct: 1028 tggctgccgctgctgcccaagccc 1005
to top
>dbj|AK093670.1| Homo sapiens cDNA FLJ36351 fis, clone THYMU2007146
          Length = 2152

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 38  tggctgccgctgctgcgcaagccc 61
           |||||||||||||||| |||||||
Sbjct: 670 tggctgccgctgctgcccaagccc 647
to top
>gb|AC087320.16| Homo sapiens 12p BAC RP11-818E15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 63090

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atgtatgcatgtacgtatac 203
             ||||||||||||||||||||
Sbjct: 51988 atgtatgcatgtacgtatac 51969
to top
>gb|AC009872.8| Homo sapiens chromosome 8, clone RP11-108P12, complete sequence
          Length = 123436

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   catgtatgcatgtacgtata 202
             ||||||||||||||||||||
Sbjct: 70459 catgtatgcatgtacgtata 70440
to top
>gb|BC011000.2| Homo sapiens cell division cycle associated 5, mRNA (cDNA clone
            MGC:16386 IMAGE:3938081), complete cds
          Length = 2507

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   tggctgccgctgctgcgcaagccc 61
            |||||||||||||||| |||||||
Sbjct: 1003 tggctgccgctgctgcccaagccc 980
to top
>ref|NM_080668.2| Homo sapiens cell division cycle associated 5 (CDCA5), mRNA
          Length = 2507

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   tggctgccgctgctgcgcaagccc 61
            |||||||||||||||| |||||||
Sbjct: 1003 tggctgccgctgctgcccaagccc 980
to top
>gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 of 74 of the complete
              sequence
          Length = 203546

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    tgcatgtatgcatgtacgta 200
              ||||||||||||||||||||
Sbjct: 128154 tgcatgtatgcatgtacgta 128135
to top
>dbj|AP003068.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-399J13, complete
             sequence
          Length = 187934

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    tggctgccgctgctgcgcaagccc 61
             |||||||||||||||| |||||||
Sbjct: 39002 tggctgccgctgctgcccaagccc 39025
to top
>gb|AC108818.11| Mus musculus chromosome 7, clone RP23-474B17, complete sequence
          Length = 180498

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   gtgcatgtatgcatgtacgtatac 203
             |||||||||||||||| |||||||
Sbjct: 97616 gtgcatgtatgcatgttcgtatac 97639
to top
>gb|AC006618.1| Caenorhabditis elegans cosmid C45B2, complete sequence
          Length = 43809

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    gtggctgccgctgctgcgca 56
             ||||||||||||||||||||
Sbjct: 10860 gtggctgccgctgctgcgca 10841
to top
>emb|AL832526.1|HSM803835 Homo sapiens mRNA; cDNA DKFZp547C0716 (from clone DKFZp547C0716)
          Length = 2299

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 38  tggctgccgctgctgcgcaagccc 61
           |||||||||||||||| |||||||
Sbjct: 811 tggctgccgctgctgcccaagccc 788
to top
>emb|AL627345.11| Mouse DNA sequence from clone RP23-169E7 on chromosome 4, complete
             sequence
          Length = 73565

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   gtgcatgtatgcatgtacgt 199
             ||||||||||||||||||||
Sbjct: 30682 gtgcatgtatgcatgtacgt 30663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,944,833
Number of Sequences: 3902068
Number of extensions: 1944833
Number of successful extensions: 68721
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68578
Number of HSP's gapped (non-prelim): 143
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top