Clone Name | baak4j09 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009447.1| Triticum aestivum clone wlmk8.pk0015.h6:fis, full insert mRNA sequence Length = 1206 Score = 519 bits (262), Expect = e-144 Identities = 373/410 (90%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 544 tgcatgctgggcatggggagcgggcagccaaacagggtggacagcctgaggatcgccttc 603 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccattt 121 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 604 aggaaagcaggggaggccgccaagggagccgctctggccagcgacgccttcttcccattc 663 Query: 122 gcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcct 181 | |||||||| ||||||||||| || || |||||||||||||| ||||||||||||||| Sbjct: 664 ccttggaaggatgccgtggaggaagcgtgtgagaacggcatcggcacgatcgcgcagcct 723 Query: 182 ggcggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctc 241 ||||||||||||||||||||||||||||| ||||||||||| ||||||| || |||||| Sbjct: 724 ggcggcagcatgagggacaaggatgccgttgactgctgcaataagtacggcgtgtccctc 783 Query: 242 ctcttcactggcgtccgccacttcaggcactgagcctaacctgagtccataaggtcatat 301 |||||||| |||||||||||||||||||||||||||||||||||| | ||||| | ||| Sbjct: 784 ctcttcaccggcgtccgccacttcaggcactgagcctaacctgagcacttaaggccgtat 843 Query: 302 cactggtctactgttagtcagtctgccgcggaaactcgcggatgtttgtcgcaataagac 361 ||| |||||| | ||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 844 caccggtctatcggtagtcagtccgccgcggaaacttgcggatgtttgtcgcaataagac 903 Query: 362 aggcgcaggtggtcttgcgtccaactaggaataactgtatgacggcggcg 411 ||||||||||| | || |||||||||||| ||| |||||||||| |||| Sbjct: 904 aggcgcaggtgattctgagtccaactaggattaattgtatgacggtggcg 953 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 446 tcacattgctgagccagcagcggctg 471 |||||||||||||||||||||||||| Sbjct: 998 tcacattgctgagccagcagcggctg 1023
>ref|XM_480615.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2107 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 1592 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 1651 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccattt 121 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 1652 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccattc 1711 Query: 122 gcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcct 181 || ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| Sbjct: 1712 gcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccg 1771 Query: 182 ggcggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctc 241 ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct: 1772 agcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctc 1831 Query: 242 ctcttcactggcgtccgccacttcaggcactgagc 276 |||||||| |||||| | ||||||||||||||||| Sbjct: 1832 ctcttcaccggcgtcaggcacttcaggcactgagc 1866
>ref|XM_480614.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2107 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 1599 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 1658 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccattt 121 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 1659 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccattc 1718 Query: 122 gcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcct 181 || ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| Sbjct: 1719 gcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccg 1778 Query: 182 ggcggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctc 241 ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct: 1779 agcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctc 1838 Query: 242 ctcttcactggcgtccgccacttcaggcactgagc 276 |||||||| |||||| | ||||||||||||||||| Sbjct: 1839 ctcttcaccggcgtcaggcacttcaggcactgagc 1873
>dbj|AK102764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D20, full insert sequence Length = 2106 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 1598 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 1657 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccattt 121 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 1658 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccattc 1717 Query: 122 gcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcct 181 || ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| Sbjct: 1718 gcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccg 1777 Query: 182 ggcggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctc 241 ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct: 1778 agcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctc 1837 Query: 242 ctcttcactggcgtccgccacttcaggcactgagc 276 |||||||| |||||| | ||||||||||||||||| Sbjct: 1838 ctcttcaccggcgtcaggcacttcaggcactgagc 1872
>dbj|AK064336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G10, full insert sequence Length = 2123 Score = 228 bits (115), Expect = 1e-56 Identities = 235/275 (85%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 1592 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 1651 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccattt 121 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 1652 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccattc 1711 Query: 122 gcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcct 181 || ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| Sbjct: 1712 gcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccg 1771 Query: 182 ggcggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctc 241 ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct: 1772 agcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctc 1831 Query: 242 ctcttcactggcgtccgccacttcaggcactgagc 276 |||||||| |||||| | ||||||||||||||||| Sbjct: 1832 ctcttcaccggcgtcaggcacttcaggcactgagc 1866
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 125 tggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcctggc 184 ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| || Sbjct: 6217306 tggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccgagc 6217365 Query: 185 ggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctcctc 244 ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 6217366 ggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctcctc 6217425 Query: 245 ttcactggcgtccgccacttcaggcactgagc 276 ||||| |||||| | ||||||||||||||||| Sbjct: 6217426 ttcaccggcgtcaggcacttcaggcactgagc 6217457 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 6216666 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 6216725 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatt 120 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 6216726 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccatt 6216784
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 125 tggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcctggc 184 ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| || Sbjct: 3443 tggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccgagc 3502 Query: 185 ggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctcctc 244 ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 3503 ggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctcctc 3562 Query: 245 ttcactggcgtccgccacttcaggcactgagc 276 ||||| |||||| | ||||||||||||||||| Sbjct: 3563 ttcaccggcgtcaggcacttcaggcactgagc 3594 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 2803 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 2862 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatt 120 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 2863 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccatt 2921
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 125 tggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcctggc 184 ||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||| || Sbjct: 80699 tggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccgagc 80758 Query: 185 ggcagcatgagggacaaggatgccgtcgactgctgcaacaagtacgatgtctccctcctc 244 ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct: 80759 ggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctcctc 80818 Query: 245 ttcactggcgtccgccacttcaggcactgagc 276 ||||| |||||| | ||||||||||||||||| Sbjct: 80819 ttcaccggcgtcaggcacttcaggcactgagc 80850 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 2 tgcatgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttc 61 |||||| | |||||||| || || ||||||||||| |||| || |||| ||||| ||| Sbjct: 80059 tgcatgttaggcatgggaagtggccagccaaacagactggagagtctgagaattgctttc 80118 Query: 62 aggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatt 120 ||||||||||| |||| ||||| ||||||||| ||||||| || || ||||||||||| Sbjct: 80119 aggaaagcaggagaggaggccaaaggagctgctttggccagtgatgcattcttcccatt 80177
>gb|AY104212.1| Zea mays PCO098672 mRNA sequence Length = 829 Score = 105 bits (53), Expect = 1e-19 Identities = 143/173 (82%) Strand = Plus / Plus Query: 56 gccttcaggaaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttc 115 ||||| ||||| ||||| |||| ||||||||||| || ||||||||||||||||||| Sbjct: 560 gcctttaggaaggcaggagaggaggccaagggagccgcattggccagcgacgccttcttt 619 Query: 116 ccatttgcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcg 175 || ||||||||||| || || || |||||||| ||| ||||||||||||| | ||||| Sbjct: 620 ccttttgcctggaatgatgctgtcgaggaggcgtgccagaacggcatcggcatcatcgcc 679 Query: 176 cagcctggcggcagcatgagggacaaggatgccgtcgactgctgcaacaagta 228 ||||| || ||||| | || |||| |||| ||||| | |||||||||||||| Sbjct: 680 cagccaggaggcagtaagaaggacgaggacgccgttgcgtgctgcaacaagta 732
>ref|NM_179909.1| Arabidopsis thaliana IMP cyclohydrolase/ phosphoribosylaminoimidazolecarboxamide formyltransferase AT2G35040 mRNA, complete cds Length = 1997 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 5 atgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttcagg 64 |||||||| ||||| ||||| ||||||||| | || || || |||| || || |||| | Sbjct: 1541 atgctggggatgggaagcggacagccaaaccgagtagagagtctgagaatagctttcaag 1600 Query: 65 aaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatttgcc 124 ||||| ||||||| || || |||||||| ||||||| ||||| ||||||||||| || Sbjct: 1601 aaagctggggaggaagctaaaggagctgccttggccagtgacgcattcttcccattcgct 1660 Query: 125 tggaaggacgccgtggaggaggc 147 ||||| || || ||||| ||||| Sbjct: 1661 tggaaagatgcggtggaagaggc 1683
>gb|AY133727.1| Arabidopsis thaliana clone U20082 putative phosphoribosylaminoimidazolecarboxamide formyltransferase (At2g35040) mRNA, complete cds Length = 1822 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 5 atgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttcagg 64 |||||||| ||||| ||||| ||||||||| | || || || |||| || || |||| | Sbjct: 1522 atgctggggatgggaagcggacagccaaaccgagtagagagtctgagaatagctttcaag 1581 Query: 65 aaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatttgcc 124 ||||| ||||||| || || |||||||| ||||||| ||||| ||||||||||| || Sbjct: 1582 aaagctggggaggaagctaaaggagctgccttggccagtgacgcattcttcccattcgct 1641 Query: 125 tggaaggacgccgtggaggaggc 147 ||||| || || ||||| ||||| Sbjct: 1642 tggaaagatgcggtggaagaggc 1664
>gb|AY091122.1| Arabidopsis thaliana putative phosphoribosylaminoimidazolecarboxamide formyltransferase (At2g35040) mRNA, complete cds Length = 2016 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 5 atgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttcagg 64 |||||||| ||||| ||||| ||||||||| | || || || |||| || || |||| | Sbjct: 1541 atgctggggatgggaagcggacagccaaaccgagtagagagtctgagaatagctttcaag 1600 Query: 65 aaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatttgcc 124 ||||| ||||||| || || |||||||| ||||||| ||||| ||||||||||| || Sbjct: 1601 aaagctggggaggaagctaaaggagctgccttggccagtgacgcattcttcccattcgct 1660 Query: 125 tggaaggacgccgtggaggaggc 147 ||||| || || ||||| ||||| Sbjct: 1661 tggaaagatgcggtggaagaggc 1683
>emb|BX821285.1|CNS0A98A Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL32ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1561 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 5 atgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttcagg 64 |||||||| ||||| ||||| ||||||||| | || || || |||| || || |||| | Sbjct: 1145 atgctggggatgggaagcggacagccaaaccgagtagagagtctgagaatagctttcaag 1204 Query: 65 aaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatttgcc 124 ||||| ||||||| || || |||||||| ||||||| ||||| ||||||||||| || Sbjct: 1205 aaagctggggaggaagctaaaggagctgccttggccagtgacgcattcttcccattcgct 1264 Query: 125 tggaaggacgccgtggaggaggc 147 ||||| || || ||||| ||||| Sbjct: 1265 tggaaagatgcggtggaagaggc 1287
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Minus Query: 5 atgctgggcatgggtagcgggcagccaaacagggtggacagcttgaggattgccttcagg 64 |||||||| ||||| ||||| ||||||||| | || || || |||| || || |||| | Sbjct: 94399 atgctggggatgggaagcggacagccaaaccgagtagagagtctgagaatagctttcaag 94340 Query: 65 aaagcaggggaggctgccaagggagctgctctggccagcgacgccttcttcccatt 120 ||||| ||||||| || || |||||||| ||||||| ||||| ||||||||||| Sbjct: 94339 aaagctggggaggaagctaaaggagctgccttggccagtgacgcattcttcccatt 94284
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 98 gccagcgacgccttcttcccatttgcc 124 |||||||||||||||||||| |||||| Sbjct: 3274505 gccagcgacgccttcttcccctttgcc 3274479
>gb|AY193836.1| Vigna unguiculata aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase (pur9) mRNA, complete cds Length = 1965 Score = 46.1 bits (23), Expect = 0.10 Identities = 47/55 (85%) Strand = Plus / Plus Query: 96 tggccagcgacgccttcttcccatttgcctggaaggacgccgtggaggaggcatg 150 ||||||| || ||||||||||||||||| ||||| || || ||||| || ||||| Sbjct: 1701 tggccagtgatgccttcttcccatttgcttggaaagatgctgtggaagaagcatg 1755
>emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on chromosome 10 Contains the 5' end of the TUBGCP2 gene for tubulin gamma complex associated protein 2, the gene for a novel protein, the gene for calcyon D1 dopamine receptor-interacting protein (CALCYON), an autointegration factor (BANF1) pseudogene, a novel gene, the gene for uterine-specific proline-rich acidic protein (UPA), gene FLJ34392, the ECHS1 gene for enoyl Coenzyme A hydratase, short chain, 1, mitachondrial, the gene for peroxisomal N1-acetyl-spermine/spermidine oxidase (PAO), a novel gene, the 5' end of a novel gene (LOC92170) and ten CpG islands, complete sequence Length = 116311 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 caggggaggctgccaagggag 89 ||||||||||||||||||||| Sbjct: 61308 caggggaggctgccaagggag 61288
>gb|BC084931.1| Xenopus laevis cDNA clone IMAGE:6863628 Length = 4798 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tgtctccctcctcttcactg 251 |||||||||||||||||||| Sbjct: 1410 tgtctccctcctcttcactg 1391
>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete sequence Length = 158357 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ttcccatttgcctggaagga 132 |||||||||||||||||||| Sbjct: 154302 ttcccatttgcctggaagga 154321
>emb|AL121987.34|HSBA536C5 Human DNA sequence from clone RP11-536C5 on chromosome 1q23.1-24.1 Contains the 5' end of the KCNJ10 gene for potassium inwardly-rectifying channel subfamily J member 10, a novel gene, the KCNJ9 gene for potassium inwardly-rectifying channel subfamily J member 9, the IGSF8 gene for immunoglobulin superfamily member 8, the ATP1A2 gene for Na+/K+ transporting ATPase alpha 2 (+) polypeptide, the ATP1A4 gene for Na+/K+ transporting ATPase alpha 4 (+) polypeptide, the CASQ1 gene for calsequestrin 1 (fast-twitch, skeletal muscle), a novel gene, the PEA15 gene for phosphoprotein enriched in astrocytes 15 and four CpG islands, complete sequence Length = 170834 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 ggggaggctgccaagggagc 90 |||||||||||||||||||| Sbjct: 99876 ggggaggctgccaagggagc 99895
>emb|AL121901.20|HSBA49G10 Human DNA sequence from clone RP11-49G10 on chromosome 20 Contains the C20orf70 gene, the SOCS2P1 gene for suppressor of cytokine signalling 2 pseudogene 1, a novel gene, the C20orf71 gene, the PLUNC gene for palate, lung and nasal epithelium carcinoma associated, the 5' end of the C20orf114 gene encoding a protein similar to murine von ebner minor salivary gland protein, the RPL12P3 gene for ribosomal protein L12 pseudogene 3, the gene for breast cancer and salivary gland expression protein (BASE) and a CpG island, complete sequence Length = 161593 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 caagggagctgctctggcca 101 |||||||||||||||||||| Sbjct: 94177 caagggagctgctctggcca 94196
>emb|X55107.1|MLTRNATH M. luteus gene for tRNA-Thr Length = 200 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 agggagctgctctggccagc 103 |||||||||||||||||||| Sbjct: 101 agggagctgctctggccagc 82
>dbj|AB183847.1| Streptococcus suis purH, purD genes, partial cds, strain:89-590 Length = 982 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB183846.1| Streptococcus suis purH, purD genes, partial cds, strain:89-5259 Length = 983 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB183833.1| Streptococcus suis purH, purD genes, partial cds, strain:14636 Length = 982 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB183832.1| Streptococcus suis purH, sepS6, purD genes, partial and complete cds, strain:2524 Length = 1841 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB183831.1| Streptococcus suis purH, sepS5, purD genes, partial and complete cds, strain:11538 Length = 1940 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB183830.1| Streptococcus suis purH, sepS4, purD genes, partial and complete cds, strain:6407 Length = 1940 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB058944.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: 89-2479 Length = 4486 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB058943.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: 8074 Length = 4486 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB058942.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: 4961 Length = 4486 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 373 gacgccttcttcccatttgc 392
>dbj|AB058941.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: NIAH11318 Length = 4487 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 374 gacgccttcttcccatttgc 393
>dbj|AB045609.1| Streptococcus suis purF, purM, purN, purH, ssuMA, ssuMB, ssuRA, ssuRB, purD, purE genes, partial and complete cds Length = 9618 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gacgccttcttcccatttgc 123 |||||||||||||||||||| Sbjct: 3958 gacgccttcttcccatttgc 3977 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,459,255 Number of Sequences: 3902068 Number of extensions: 3459255 Number of successful extensions: 65057 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64968 Number of HSP's gapped (non-prelim): 89 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)