ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 333 4e-88
2dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 5e-69
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
6gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence 58 4e-05
7gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence 44 0.54
8gb|AC112203.2| Homo sapiens chromosome 5 clone RP11-72K17, compl... 44 0.54
9gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome... 44 0.54
10ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 ... 42 2.1
11ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA 42 2.1
12gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome... 42 2.1
13emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chr... 42 2.1
14emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for n... 42 2.1
15ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA 42 2.1
16gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds 42 2.1
17dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 2.1
18gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I... 42 2.1
19emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Co... 42 2.1
20emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Co... 42 2.1
21emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Co... 42 2.1
22emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Co... 42 2.1
23emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on ch... 42 2.1
24gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complet... 42 2.1
25dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, comp... 42 2.1
26ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquiti... 40 8.5
27gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, c... 40 8.5
28gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, com... 40 8.5
29gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, com... 40 8.5
30emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BA... 40 8.5
31gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete se... 40 8.5
32gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 40 8.5
33gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, comp... 40 8.5
34gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, com... 40 8.5
35gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, com... 40 8.5
36dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 8.5
37dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 8.5
38emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Co... 40 8.5
39emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Co... 40 8.5
40gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 40 8.5
41gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17... 40 8.5
42gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I... 40 8.5
43dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown ... 40 8.5
44dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.5
45dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.5
46emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chro... 40 8.5 
>dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E01, full
           insert sequence
          Length = 430

 Score =  333 bits (168), Expect = 4e-88
 Identities = 277/312 (88%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 160 ctacggaagtggttgatgtggacatagcaactcacatagaaatctatgacgatggtcctg 219
           |||| ||| |||||||||||||||||||||| |||||||| || ||||| ||||| ||||
Sbjct: 1   ctacagaactggttgatgtggacatagcaacccacatagacatatatgatgatggccctg 60

                                                                       
Query: 220 aaagaagtttacttgttgtggaatcagctgaccgtccagggttgttggttgatctagtta 279
           | ||||| |||||||| |||||| |||||||||| ||||| ||||||||||| || ||||
Sbjct: 61  acagaagcttacttgtagtggaaacagctgaccgaccaggtttgttggttgaccttgtta 120

                                                                       
Query: 280 agatcattgctgacatcaatatcactgtccaatctggagaatttgacaccgaggggctac 339
           ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 121 agatcattgatgacatcaacatcaccgtccaatctggagaatttgacactgagggcctac 180

                                                                       
Query: 340 tggccaaggcaaaattccatgtcagttaccggggcaagccattaatcaaggctttgcaac 399
           |||| || ||||||||||||||||||||  |||| || ||||| ||||| || ||||| |
Sbjct: 181 tggctaaagcaaaattccatgtcagttataggggtaaaccattgatcaaagccttgcagc 240

                                                                       
Query: 400 aggttcttgctaatagctttgcgttatttcttgaggaggccgacgacagaggatgccagt 459
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||
Sbjct: 241 aggttcttgctaatagc-ttgcgctatttcttgaggaggccgacgacagaggagggcagt 299

                       
Query: 460 ttctaggcagat 471
           | ||||||||||
Sbjct: 300 tactaggcagat 311
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>dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B11, full
            insert sequence
          Length = 1782

 Score =  270 bits (136), Expect = 5e-69
 Identities = 218/244 (89%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                        
Query: 228  ttacttgttgtggaatcagctgaccgtccagggttgttggttgatctagttaagatcatt 287
            |||||||| |||||| |||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 1155 ttacttgtagtggaaacagctgaccgaccaggtttgttggttgaccttgttaagatcatt 1214

                                                                        
Query: 288  gctgacatcaatatcactgtccaatctggagaatttgacaccgaggggctactggccaag 347
            | ||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| || 
Sbjct: 1215 gatgacatcaacatcaccgtccaatctggagaatttgacactgagggcctactggctaaa 1274

                                                                        
Query: 348  gcaaaattccatgtcagttaccggggcaagccattaatcaaggctttgcaacaggttctt 407
            ||||||||||||||||||||  |||| || ||||| ||||| || ||||| |||||||||
Sbjct: 1275 gcaaaattccatgtcagttataggggtaaaccattgatcaaagccttgcagcaggttctt 1334

                                                                        
Query: 408  gctaatagctttgcgttatttcttgaggaggccgacgacagaggatgccagtttctaggc 467
            ||||||||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct: 1335 gctaatagc-ttgcgctatttcttgaggaggccgacgacagaggagggcagttactaggc 1393

                
Query: 468  agat 471
            ||||
Sbjct: 1394 agat 1397



 Score =  210 bits (106), Expect = 4e-51
 Identities = 193/222 (86%)
 Strand = Plus / Plus

                                                                       
Query: 5   taagtttgctataacaaagtcgtcaactggtcgcaaaattgatgacccggagttgttaga 64
           |||||| ||||||||||| | ||| |||||||||||||||| ||| || |||||||||||
Sbjct: 559 taagttagctataacaaaattgtcgactggtcgcaaaattggtgaaccagagttgttaga 618

                                                                       
Query: 65  agcagtaagactgacaattatcaacaacatgcttgaatatcatcctgaagctagcagtca 124
           ||||||| | ||||||||||| ||||||||| || | || || || ||||||||||| ||
Sbjct: 619 agcagtacggctgacaattataaacaacatgattcagtaccacccagaagctagcagcca 678

                                                                       
Query: 125 attggccatgggtgcaacttttgggctagagccccctacggaagtggttgatgtggacat 184
           ||||||  |||||||||||||||| | |||||||||||| ||| ||||||||||||||||
Sbjct: 679 attggctctgggtgcaacttttggtccagagccccctacagaactggttgatgtggacat 738

                                                     
Query: 185 agcaactcacatagaaatctatgacgatggtcctgaaagaag 226
           |||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 739 agcaacccacatagacatatatgatgatggccctgacagaag 780
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Minus

                                                                           
Query: 228     ttacttgttgtggaatcagctgaccgtccagggttgttggttgatctagttaagatcatt 287
               |||||||| |||||| |||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 8663514 ttacttgtagtggaaacagctgaccgaccaggtttgttggttgaccttgttaagatcatt 8663455

                                                             
Query: 288     gctgacatcaatatcactgtccaatctggagaatttgacaccgagg 333
               | ||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 8663454 gatgacatcaacatcaccgtccaatctggagaatttgacactgagg 8663409



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 68/73 (93%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                           
Query: 399     caggttcttgctaatagctttgcgttatttcttgaggaggccgacgacagaggatgccag 458
               |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct: 8663071 caggttcttgctaatagctt-gcgctatttcttgaggaggccgacgacagaggagggcag 8663013

                            
Query: 459     tttctaggcagat 471
               || ||||||||||
Sbjct: 8663012 ttactaggcagat 8663000



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                           
Query: 30      actggtcgcaaaattgatgacccggagttgttagaagcagtaagactgacaattatcaac 89
               |||||||||||||||| ||| || |||||||||||||||||| | ||||||||||| |||
Sbjct: 8664390 actggtcgcaaaattggtgaaccagagttgttagaagcagtacggctgacaattataaac 8664331

                     
Query: 90      aacatg 95
               ||||||
Sbjct: 8664330 aacatg 8664325



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 111     gaagctagcagtcaattggccatgggtgcaacttttgggctagagccccctacggaagtg 170
               ||||||||||| ||||||||  |||||||||||||||| | |||||||||||| ||| ||
Sbjct: 8664222 gaagctagcagccaattggctctgggtgcaacttttggtccagagccccctacagaactg 8664163

                 
Query: 171     gt 172
               ||
Sbjct: 8664162 gt 8664161



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                        
Query: 170     ggttgatgtggacatagcaactcacatagaaatctatgacgatggtcctgaaagaag 226
               ||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 8663945 ggttgatgtggacatagcaacccacatagacatatatgatgatggccctgacagaag 8663889



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                           
Query: 331     aggggctactggccaaggcaaaattccatgtcagttaccggggcaagccattaatcaagg 390
               |||| |||||||| || ||||||||||||||||||||  |||| || ||||| ||||| |
Sbjct: 8663330 agggcctactggctaaagcaaaattccatgtcagttataggggtaaaccattgatcaaag 8663271

                            
Query: 391     ctttgcaacaggt 403
               | ||||| |||||
Sbjct: 8663270 ccttgcagcaggt 8663258
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Minus

                                                                          
Query: 228    ttacttgttgtggaatcagctgaccgtccagggttgttggttgatctagttaagatcatt 287
              |||||||| |||||| |||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 175425 ttacttgtagtggaaacagctgaccgaccaggtttgttggttgaccttgttaagatcatt 175366

                                                            
Query: 288    gctgacatcaatatcactgtccaatctggagaatttgacaccgagg 333
              | ||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 175365 gatgacatcaacatcaccgtccaatctggagaatttgacactgagg 175320



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 68/73 (93%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                          
Query: 399    caggttcttgctaatagctttgcgttatttcttgaggaggccgacgacagaggatgccag 458
              |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct: 174982 caggttcttgctaatagctt-gcgctatttcttgaggaggccgacgacagaggagggcag 174924

                           
Query: 459    tttctaggcagat 471
              || ||||||||||
Sbjct: 174923 ttactaggcagat 174911



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                          
Query: 30     actggtcgcaaaattgatgacccggagttgttagaagcagtaagactgacaattatcaac 89
              |||||||||||||||| ||| || |||||||||||||||||| | ||||||||||| |||
Sbjct: 176301 actggtcgcaaaattggtgaaccagagttgttagaagcagtacggctgacaattataaac 176242

                    
Query: 90     aacatg 95
              ||||||
Sbjct: 176241 aacatg 176236



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 111    gaagctagcagtcaattggccatgggtgcaacttttgggctagagccccctacggaagtg 170
              ||||||||||| ||||||||  |||||||||||||||| | |||||||||||| ||| ||
Sbjct: 176133 gaagctagcagccaattggctctgggtgcaacttttggtccagagccccctacagaactg 176074

                
Query: 171    gt 172
              ||
Sbjct: 176073 gt 176072



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                       
Query: 170    ggttgatgtggacatagcaactcacatagaaatctatgacgatggtcctgaaagaag 226
              ||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 175856 ggttgatgtggacatagcaacccacatagacatatatgatgatggccctgacagaag 175800



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                          
Query: 331    aggggctactggccaaggcaaaattccatgtcagttaccggggcaagccattaatcaagg 390
              |||| |||||||| || ||||||||||||||||||||  |||| || ||||| ||||| |
Sbjct: 175241 agggcctactggctaaagcaaaattccatgtcagttataggggtaaaccattgatcaaag 175182

                           
Query: 391    ctttgcaacaggt 403
              | ||||| |||||
Sbjct: 175181 ccttgcagcaggt 175169
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBb0070J06
          Length = 142303

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Minus

                                                                        
Query: 228  ttacttgttgtggaatcagctgaccgtccagggttgttggttgatctagttaagatcatt 287
            |||||||| |||||| |||||||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 6493 ttacttgtagtggaaacagctgaccgaccaggtttgttggttgaccttgttaagatcatt 6434

                                                          
Query: 288  gctgacatcaatatcactgtccaatctggagaatttgacaccgagg 333
            | ||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct: 6433 gatgacatcaacatcaccgtccaatctggagaatttgacactgagg 6388



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 68/73 (93%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                        
Query: 399  caggttcttgctaatagctttgcgttatttcttgaggaggccgacgacagaggatgccag 458
            |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct: 6050 caggttcttgctaatagctt-gcgctatttcttgaggaggccgacgacagaggagggcag 5992

                         
Query: 459  tttctaggcagat 471
            || ||||||||||
Sbjct: 5991 ttactaggcagat 5979



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                        
Query: 30   actggtcgcaaaattgatgacccggagttgttagaagcagtaagactgacaattatcaac 89
            |||||||||||||||| ||| || |||||||||||||||||| | ||||||||||| |||
Sbjct: 7369 actggtcgcaaaattggtgaaccagagttgttagaagcagtacggctgacaattataaac 7310

                  
Query: 90   aacatg 95
            ||||||
Sbjct: 7309 aacatg 7304



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 111  gaagctagcagtcaattggccatgggtgcaacttttgggctagagccccctacggaagtg 170
            ||||||||||| ||||||||  |||||||||||||||| | |||||||||||| ||| ||
Sbjct: 7201 gaagctagcagccaattggctctgggtgcaacttttggtccagagccccctacagaactg 7142

              
Query: 171  gt 172
            ||
Sbjct: 7141 gt 7140



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 170  ggttgatgtggacatagcaactcacatagaaatctatgacgatggtcctgaaagaag 226
            ||||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||||
Sbjct: 6924 ggttgatgtggacatagcaacccacatagacatatatgatgatggccctgacagaag 6868



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  aggggctactggccaaggcaaaattccatgtcagttaccggggcaagccattaatcaagg 390
            |||| |||||||| || ||||||||||||||||||||  |||| || ||||| ||||| |
Sbjct: 6309 agggcctactggctaaagcaaaattccatgtcagttataggggtaaaccattgatcaaag 6250

                         
Query: 391  ctttgcaacaggt 403
            | ||||| |||||
Sbjct: 6249 ccttgcagcaggt 6237
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>gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence
          Length = 1501

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 172  ttgatgtggacatagcaactcacatagaaatctatgacgatggtcctgaaagaagtttac 231
            |||||||||||||||||||||| ||  |  ||||||| |||||||||||| |||| ||||
Sbjct: 1063 ttgatgtggacatagcaactcatatccatgtctatgatgatggtcctgaacgaagcttac 1122

             
Query: 232  t 232
            |
Sbjct: 1123 t 1123



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                           
Query: 315  ggagaatttgacaccgaggggctactggccaaggcaaaattccatgt 361
            |||||||||||||||||||| || || || ||||||||||| |||||
Sbjct: 1206 ggagaatttgacaccgagggactgctagctaaggcaaaatttcatgt 1252
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>gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence
          Length = 221526

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     caattatcaacaacatgcttga 100
              ||||||||||||||||||||||
Sbjct: 197445 caattatcaacaacatgcttga 197424
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>gb|AC112203.2| Homo sapiens chromosome 5 clone RP11-72K17, complete sequence
          Length = 165916

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 495   tagttcatgatacatgatattt 516
             ||||||||||||||||||||||
Sbjct: 96537 tagttcatgatacatgatattt 96558
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>gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome 14, complete sequence
          Length = 154588

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 79     caattatcaacaacatgcttga 100
              ||||||||||||||||||||||
Sbjct: 104104 caattatcaacaacatgcttga 104125
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>ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 transcript variant
           AT1G16880.1 mRNA, complete cds
          Length = 1188

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 aatctggagaatttgacaccgaggg 334
           ||||||||||||| |||||||||||
Sbjct: 851 aatctggagaattcgacaccgaggg 875
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>ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA
          Length = 7087

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  taagatcattgctgacatcaa 298
            |||||||||||||||||||||
Sbjct: 4620 taagatcattgctgacatcaa 4640
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>gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome 9, complete sequence
          Length = 144131

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 278    taagatcattgctgacatcaa 298
              |||||||||||||||||||||
Sbjct: 141066 taagatcattgctgacatcaa 141086
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>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete
             sequence
          Length = 150563

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   gatctagttaagatcattgct 290
             |||||||||||||||||||||
Sbjct: 13095 gatctagttaagatcattgct 13075
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>emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for novel heavy chain with
            unique C-terminal region
          Length = 7087

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  taagatcattgctgacatcaa 298
            |||||||||||||||||||||
Sbjct: 4620 taagatcattgctgacatcaa 4640
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>ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA
          Length = 5620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  taagatcattgctgacatcaa 298
            |||||||||||||||||||||
Sbjct: 4545 taagatcattgctgacatcaa 4565
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>gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds
          Length = 873

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 aatctggagaatttgacaccgaggg 334
           ||||||||||||| |||||||||||
Sbjct: 719 aatctggagaattcgacaccgaggg 743
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>dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610009A05 product:myosin Va, full insert
            sequence
          Length = 2641

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  taagatcattgctgacatcaa 298
            |||||||||||||||||||||
Sbjct: 1168 taagatcattgctgacatcaa 1188
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>gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I1.12) mRNA, complete cds
          Length = 1103

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 aatctggagaatttgacaccgaggg 334
           ||||||||||||| |||||||||||
Sbjct: 803 aatctggagaattcgacaccgaggg 827
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>emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZF08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1109

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 aatctggagaatttgacaccgaggg 334
           ||||||||||||| |||||||||||
Sbjct: 852 aatctggagaattcgacaccgaggg 876
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>emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB60ZC04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1133

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 aatctggagaatttgacaccgaggg 334
           ||||||||||||| |||||||||||
Sbjct: 847 aatctggagaattcgacaccgaggg 871
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>emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1122

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 aatctggagaatttgacaccgaggg 334
           ||||||||||||| |||||||||||
Sbjct: 884 aatctggagaattcgacaccgaggg 908
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>emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZA11 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1298

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 310  aatctggagaatttgacaccgaggg 334
            ||||||||||||| |||||||||||
Sbjct: 1038 aatctggagaattcgacaccgaggg 1062
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>emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on chromosome 9, complete
              sequence
          Length = 208050

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 278    taagatcattgctgacatcaa 298
              |||||||||||||||||||||
Sbjct: 194978 taagatcattgctgacatcaa 194998
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>gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complete sequence
          Length = 168997

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 278   taagatcattgctgacatcaa 298
             |||||||||||||||||||||
Sbjct: 22322 taagatcattgctgacatcaa 22342
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>dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, complete cds
          Length = 5620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  taagatcattgctgacatcaa 298
            |||||||||||||||||||||
Sbjct: 4545 taagatcattgctgacatcaa 4565
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>ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT5G08139 mRNA, complete cds
          Length = 1520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 370 atcattgctaacatcaatatcact 347
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>gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, complete sequence
          Length = 191473

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   ccaaggcaaaattccatgtcagtt 366
             ||||||||||| ||||||||||||
Sbjct: 73720 ccaaggcaaaactccatgtcagtt 73697
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>gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, complete cds
          Length = 1131

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 228 atcattgctaacatcaatatcact 205
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>gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, complete sequence
          Length = 220133

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    aagccattaatcaaggcttt 394
              ||||||||||||||||||||
Sbjct: 121520 aagccattaatcaaggcttt 121501
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>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
          Length = 89988

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 282   atcattgctgacatcaatatcact 305
             ||||||||| ||||||||||||||
Sbjct: 43383 atcattgctaacatcaatatcact 43360
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>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence
          Length = 134892

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 486   actttatgatagttcatgat-acatgatattt 516
             ||||||||||||||||| || |||||||||||
Sbjct: 11716 actttatgatagttcatcatcacatgatattt 11685
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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 387   aaggctttgcaacaggttcttgct 410
             ||||||||||||||||||| ||||
Sbjct: 86334 aaggctttgcaacaggttcatgct 86311
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>gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, complete sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   catagcaactcacatagaaa 201
             ||||||||||||||||||||
Sbjct: 81767 catagcaactcacatagaaa 81786
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>gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, complete sequence
          Length = 142867

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   tgtccaatctggagaatttg 324
             ||||||||||||||||||||
Sbjct: 44714 tgtccaatctggagaatttg 44695
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>gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, complete cds
          Length = 1472

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 370 atcattgctaacatcaatatcact 347
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>dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL24-02-J20
          Length = 1518

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 350 atcattgctaacatcaatatcact 327
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>dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL21-55-K19
          Length = 1480

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 342 atcattgctaacatcaatatcact 319
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>emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB40ZE11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1478

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 358 atcattgctaacatcaatatcact 335
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>emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZC12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1448

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 322 atcattgctaacatcaatatcact 299
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>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   tatgatagttcatgatacat 509
             ||||||||||||||||||||
Sbjct: 69369 tatgatagttcatgatacat 69388
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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete
             sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 310   aatctggagaatttgacaccgagg 333
             ||||||||||||| ||||||||||
Sbjct: 25149 aatctggagaattcgacaccgagg 25126
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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 310   aatctggagaatttgacaccgagg 333
             ||||||||||||| ||||||||||
Sbjct: 71846 aatctggagaattcgacaccgagg 71823
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>dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown protein, complete
           cds, clone: RAFL17-31-L11
          Length = 1520

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcattgctgacatcaatatcact 305
           ||||||||| ||||||||||||||
Sbjct: 370 atcattgctaacatcaatatcact 347
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>dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete
              sequence
          Length = 215986

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    tgatctagttaagatcattg 288
              ||||||||||||||||||||
Sbjct: 131037 tgatctagttaagatcattg 131056
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>dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-379J13, complete
              sequences
          Length = 226171

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    tgatctagttaagatcattg 288
              ||||||||||||||||||||
Sbjct: 214152 tgatctagttaagatcattg 214171
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>emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chromosome 2, complete
             sequence
          Length = 170475

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   tgacaccgaggggctactgg 342
             ||||||||||||||||||||
Sbjct: 49877 tgacaccgaggggctactgg 49896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,760,505
Number of Sequences: 3902068
Number of extensions: 4760505
Number of successful extensions: 84144
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84008
Number of HSP's gapped (non-prelim): 131
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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