ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4j04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV60) Length = 764 Score = 892 bits (450), Expect = 0.0 Identities = 527/551 (95%), Gaps = 5/551 (0%) Strand = Plus / Plus Query: 16 ccggtctctgccagcgctgggccgacgcaccctcgtcgtcagggcacagaccgagggccc 75 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 189 ccggtctctgccagcgctgggccgacgtaccctcgtcgtcagggcacagaccgagggccc 248 Query: 76 gaacgcaccaccgccaaacaaacccaaggcgaccacctcgatctgggacgcgatggcgtt 135 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct: 249 gaacgcaccaccgccaaacaaacccaaggcgagcacctccatctgggacgcgatggcgtt 308 Query: 136 cagcggccctgcgccggagcgcatcaacgggcgccttgccatggtgggcttcgtgacggc 195 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 309 cagcggccctgcgccggagcgcatcaacgggcggctagccatggtgggcttcgtgacggc 368 Query: 196 gctggcggtggaggcaggccgcggcgacgggctcctctcgcagctcggcagcggcaccgg 255 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 gctggctgtggaggcaggccgcggcgacgggctcctctcgcagctcggcagcggcaccgg 428 Query: 256 acaggcgtggttcgcctacaccgtggcggtgctgtccatggcgtcgctggtgccgttgct 315 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 429 gcaggcgtggttcgcctacaccgtggcgatgctgtccatggcgtcgctggtgccgctgct 488 Query: 316 tcagggcgagagcgccgagggcagagccggcgccatcatgaacgccaacgcggagctctg 375 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 489 ccagggcgagagcgccgagggcagagccggcgccatcatgaacgccaacgcggagctctg 548 Query: 376 gaacggccgcttcgccatgctcggactcgtcgcgctcgccgccaccgagatcatcaccgg 435 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 549 gaacggccgcttcgccatgatcggactcgtcgcgctcgccgccaccgagatcatcaccgg 608 Query: 436 cgcgcccttcatcaacgtgtagaataaaatagcttcgctgtcgaccggataacacaacat 495 | | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| | Sbjct: 609 cacccccttcatcaacgtgtagaagaaaatagctttgctgtcgaccggataacacaacct 668 Query: 496 gtacttagctagtaggacatgtacgtaaatggtc-agaactgatcatgctcgtattcttt 554 ||||||||||||||||||||||| |||| || |||| ||||||| |||||||||||| Sbjct: 669 gtacttagctagtaggacatgta----aatgatccagaattgatcattctcgtattcttt 724 Query: 555 gtagtattgct 565 ||||||||||| Sbjct: 725 gtagtattgct 735
>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV90) Length = 660 Score = 876 bits (442), Expect = 0.0 Identities = 500/518 (96%), Gaps = 1/518 (0%) Strand = Plus / Plus Query: 2 cagcagcttcggggcc-ggtctctgccagcgctgggccgacgcaccctcgtcgtcagggc 60 |||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 93 cagcagcttcggcgcccggtctctgccagcgctgggccgacgcgccctcgtcgtcagggc 152 Query: 61 acagaccgagggcccgaacgcaccaccgccaaacaaacccaaggcgaccacctcgatctg 120 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 153 acagaccgagggcccgagcgcaccaccgccaaacaaacccaaggcgagcacctcgatctg 212 Query: 121 ggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatggt 180 ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 213 ggacgagatggcgttcagcggccctgcgccggagcgcatcaacgggcggctagccatggt 272 Query: 181 gggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcagct 240 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 273 gggcttcgtgacggcgcttgcggtggaggcagggcgcggcgacgggctcctctcgcagct 332 Query: 241 cggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcgtc 300 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cggcagcggcaccgggcaggcgtggttcgcctacaccgtggcggtgctgtccatggcgtc 392 Query: 301 gctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaacgc 360 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 gctggtgccgctgctccagggcgagagcgccgagggcagagccggcgccatcatgaacgc 452 Query: 361 caacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgccac 420 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 453 caacgcggaactctggaacggccgcttcgccatgctcggactcgtcgcgctggccgccac 512 Query: 421 cgagatcatcaccggcgcgcccttcatcaacgtgtagaataaaatagcttcgctgtcgac 480 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 513 cgagatcatcaccggcgcgcctttcatcaacgtgtagaataaaatagctttgctgtcgac 572 Query: 481 cggataacacaacatgtacttagctagtaggacatgta 518 ||||||||||||||||||||||||||||||||||||| Sbjct: 573 aggataacacaacatgtacttagctagtaggacatgta 610
>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early light-inducible protein (ELIP), complete cds Length = 818 Score = 620 bits (313), Expect = e-174 Identities = 486/542 (89%), Gaps = 5/542 (0%) Strand = Plus / Plus Query: 19 gtctctgccagcgctgggccgacgcaccctcgtcgtcagggcacagaccgagggcccgaa 78 ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| Sbjct: 201 gtctctgccagcgctgggcagacgcgccctcgtcgtcagggcacagaccgggggcccgag 260 Query: 79 cgcaccaccgccaaacaaacccaaggcgaccacctcgatctgggacgcgatggcgttcag 138 ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| Sbjct: 261 cgcaccaccgccaaacaaacccaaggcgagcacctctatctgggacgcgctggcgttcag 320 Query: 139 cggccctgcgccggagcgcatcaacgggcgccttgccatggtgggcttcgtgacggcgct 198 ||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| Sbjct: 321 cggccctgcgccggagcgcattaatgggcgcctggccatggtgggtttcgtgacggcgct 380 Query: 199 ggcggtggaggcaggccgcggcgacgggctcctctcgcagctcggcagcggcaccggaca 258 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || Sbjct: 381 cgccgtggaggcagggcgcggcgacgggctcctttcgcagctcggcagcggcaccgggca 440 Query: 259 ggcgtggttcgcctacaccgtggcggtgctgtccatggcgtcgctggtgccgttgcttca 318 |||||||||||||||| |||||||| ||| ||| | | || ||||||||| |||| || Sbjct: 441 ggcgtggttcgcctactccgtggcgtggctatccgtatcttctctggtgccgctgctcca 500 Query: 319 gggcgagagcgccgagggcagagccggcgccatcatgaacgccaacgcggagctctggaa 378 || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 501 aggagagagcgccgagggcagagccggtatcatcatgaacgccaacgcggagctctggaa 560 Query: 379 cggccgcttcgccatgctcggactcgtcgcgctcgccgccaccgagatcatcaccggcgc 438 |||||||||||||||||||||||||||||| || || || || ||||||||||| ||||| Sbjct: 561 cggccgcttcgccatgctcggactcgtcgctctggcggcaacggagatcatcactggcgc 620 Query: 439 gcccttcatcaacgtgtagaataaaatagcttcgctgtcgaccggataacacaacatgta 498 |||||||||||||||||| || |||||||| | ||||||||||| ||||||| |||| Sbjct: 621 gcccttcatcaacgtgta-aaactaatagctttgttgtcgaccggacaacacaaactgta 679 Query: 499 cttagctagtaggacatgtacgtaaatggtcagaactgatcatgctcgtattctttgtag 558 ||||| ||||||||||| ||||||| | |||||||||||| |||||||||||| ||| Sbjct: 680 cttagttagtaggacat----gtaaatgatgagaactgatcatcctcgtattctttatag 735 Query: 559 ta 560 || Sbjct: 736 ta 737
>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds; nuclear gene for chloroplast product Length = 852 Score = 228 bits (115), Expect = 2e-56 Identities = 288/345 (83%), Gaps = 3/345 (0%) Strand = Plus / Plus Query: 117 tctgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgcca 176 ||||||||||| ||||||||||||| || ||||||||||| ||||||||||| || || | Sbjct: 316 tctgggacgcgctggcgttcagcgggcccgcgccggagcggatcaacgggcggctggcga 375 Query: 177 tggtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgc 236 |||||||||||||| | ||||| || || ||||| |||||||||||| ||||||||| Sbjct: 376 tggtgggcttcgtgtccgcgctcgccgtcgaggccacccgcggcgacggcatcctctcgc 435 Query: 237 agctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatgg 296 |||| |||| |||| | ||||||||||| ||||||| || || |||||| | Sbjct: 436 ca---ggcaacggcgccggcctcgcgtggttcgcgtacaccgccgccgtcctgtccgccg 492 Query: 297 cgtcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatga 356 |||| ||||||||| |||| ||||| ||||||||||||||||| |||| |||||| Sbjct: 493 cgtccctggtgccgctgctccagggggagagcgccgagggcaggagcggccggttcatga 552 Query: 357 acgccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccg 416 |||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 553 ccgccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgcgctcgccg 612 Query: 417 ccaccgagatcatcaccggcgcgcccttcatcaacgtgtagaata 461 ||||||| | | ||||||||||||||| |||||||||| |||| Sbjct: 613 tcaccgagtaccttaccggcgcgcccttcgtcaacgtgtaaaata 657
>ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 180 bits (91), Expect = 3e-42 Identities = 265/323 (82%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 265 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 324 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| ||||||| || |||||||| ||||||| ||||||||| |||| Sbjct: 325 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcgcggcggcgggctcctggagcag 384 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||||| ||| | |||||||||||| ||||| || ||||| ||| |||| Sbjct: 385 gccggcagcgggggcgggctcgcgtggttcgccgccaccgccgccgtgctctccgcggcg 444 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||||||| |||| || ||||| | | |||| | Sbjct: 445 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 504 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 505 gccgacgctgagctctggaacggccgcttcgccatgctcggcctcgtcgcgctcgccttc 564 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 565 accgagttcctcaccggctcgcc 587
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 180 bits (91), Expect = 3e-42 Identities = 265/323 (82%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 4176055 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 4176114 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| ||||||| || |||||||| ||||||| ||||||||| |||| Sbjct: 4176115 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcgcggcggcgggctcctggagcag 4176174 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||||| ||| | |||||||||||| ||||| || ||||| ||| |||| Sbjct: 4176175 gccggcagcgggggcgggctcgcgtggttcgccgccaccgccgccgtgctctccgcggcg 4176234 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||||||| |||| || ||||| | | |||| | Sbjct: 4176235 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 4176294 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 4176295 gccgacgctgagctctggaacggccgcttcgccatgctcggcctcgtcgcgctcgccttc 4176354 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 4176355 accgagttcctcaccggctcgcc 4176377 Score = 172 bits (87), Expect = 8e-40 Identities = 273/335 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 4178496 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 4178555 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| ||||||| || |||||||| || |||| ||||||||| |||| Sbjct: 4178556 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcggggcggcgggctcctggagcag 4178615 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||||| ||| | |||||||||||| ||||| | ||||| ||| |||| Sbjct: 4178616 gccggcagcggggacgggctcgcgtggttcgccgccaccgccaccgtgctctccgcggcg 4178675 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||||||| |||| || ||||| | | |||| | Sbjct: 4178676 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 4178735 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||| | Sbjct: 4178736 gccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgccctcgccttc 4178795 Query: 419 accgagatcatcaccggcgcgcccttcatcaacgt 453 |||||| || |||||||| |||||||| ||||||| Sbjct: 4178796 accgagttcctcaccggctcgcccttcgtcaacgt 4178830 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgatctgggacgcgatggcg 133 |||||||||||||||||||| Sbjct: 3291267 cgatctgggacgcgatggcg 3291286
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 180 bits (91), Expect = 3e-42 Identities = 265/323 (82%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 59677 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 59736 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| ||||||| || |||||||| ||||||| ||||||||| |||| Sbjct: 59737 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcgcggcggcgggctcctggagcag 59796 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||||| ||| | |||||||||||| ||||| || ||||| ||| |||| Sbjct: 59797 gccggcagcgggggcgggctcgcgtggttcgccgccaccgccgccgtgctctccgcggcg 59856 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||||||| |||| || ||||| | | |||| | Sbjct: 59857 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 59916 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 59917 gccgacgctgagctctggaacggccgcttcgccatgctcggcctcgtcgcgctcgccttc 59976 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 59977 accgagttcctcaccggctcgcc 59999 Score = 172 bits (87), Expect = 8e-40 Identities = 273/335 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 62118 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 62177 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| ||||||| || |||||||| || |||| ||||||||| |||| Sbjct: 62178 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcggggcggcgggctcctggagcag 62237 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||||| ||| | |||||||||||| ||||| | ||||| ||| |||| Sbjct: 62238 gccggcagcggggacgggctcgcgtggttcgccgccaccgccaccgtgctctccgcggcg 62297 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||||||| |||| || ||||| | | |||| | Sbjct: 62298 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 62357 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||| | Sbjct: 62358 gccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgccctcgccttc 62417 Query: 419 accgagatcatcaccggcgcgcccttcatcaacgt 453 |||||| || |||||||| |||||||| ||||||| Sbjct: 62418 accgagttcctcaccggctcgcccttcgtcaacgt 62452
>ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 172 bits (87), Expect = 8e-40 Identities = 273/335 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 226 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 285 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| ||||||| || |||||||| || |||| ||||||||| |||| Sbjct: 286 gtggggttcgtgtcggcgctcgccgtggaggcgtcgcggggcggcgggctcctggagcag 345 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||||| ||| | |||||||||||| ||||| | ||||| ||| |||| Sbjct: 346 gccggcagcggggacgggctcgcgtggttcgccgccaccgccaccgtgctctccgcggcg 405 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||||||| |||| || ||||| | | |||| | Sbjct: 406 tcgctggtgccgctgctccgcggcgagagcgcggaggcgaggagcggcggcgtgatgagc 465 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||| | Sbjct: 466 gccgacgccgagctctggaacggccgcttcgccatgctcggcctcgtcgccctcgccttc 525 Query: 419 accgagatcatcaccggcgcgcccttcatcaacgt 453 |||||| || |||||||| |||||||| ||||||| Sbjct: 526 accgagttcctcaccggctcgcccttcgtcaacgt 560
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 271 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 330 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| |||||||||| |||||||| ||||||| ||||||||| ||| Sbjct: 331 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 390 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||| | | ||| | ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 391 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 450 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||| ||| |||| || ||||| | | |||| | Sbjct: 451 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 510 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct: 511 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgcgctcgccttc 570 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 571 accgagttcctcaccggctcgcc 593
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 25483 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 25542 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| |||||||||| |||||||| ||||||| ||||||||| ||| Sbjct: 25543 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 25602 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||| | | ||| | ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 25603 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 25662 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||| ||| |||| || ||||| | | |||| | Sbjct: 25663 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 25722 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct: 25723 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgcgctcgccttc 25782 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 25783 accgagttcctcaccggctcgcc 25805
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 58021 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 58080 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| |||||||||| |||||||| ||||||| ||||||||| ||| Sbjct: 58081 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 58140 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||| | | ||| | ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 58141 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 58200 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||| ||| |||| || ||||| | | |||| | Sbjct: 58201 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 58260 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct: 58261 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgcgctcgccttc 58320 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 58321 accgagttcctcaccggctcgcc 58343
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 8061370 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 8061429 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| |||||||||| |||||||| ||||||| ||||||||| ||| Sbjct: 8061430 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 8061489 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||| | | ||| | ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 8061490 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 8061549 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||| ||| |||| || ||||| | | |||| | Sbjct: 8061550 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 8061609 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct: 8061610 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgcgctcgccttc 8061669 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 8061670 accgagttcctcaccggctcgcc 8061692 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gacggcgctggcggtggagg 209 |||||||||||||||||||| Sbjct: 10644121 gacggcgctggcggtggagg 10644102
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 165 bits (83), Expect = 2e-37 Identities = 263/323 (81%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || ||||||||||| ||||||||||| || || ||| Sbjct: 420 tgggacgtgctggcgttcagcgggccggcgccggagcggatcaacgggcggctggcgatg 479 Query: 179 gtgggcttcgtgacggcgctggcggtggaggcaggccgcggcgacgggctcctctcgcag 238 ||||| |||||| |||||||||| |||||||| ||||||| ||||||||| ||| Sbjct: 480 gtggggttcgtgtcggcgctggccgtggaggcgtcgcgcggcggcgggctcctggaccag 539 Query: 239 ctcggcagcggcaccggacaggcgtggttcgcctacaccgtggcggtgctgtccatggcg 298 ||||||| | | ||| | ||||||||||||| ||||| || ||||| ||| |||| Sbjct: 540 gccggcagctggagcgggctggcgtggttcgccgccaccgccgccgtgctctccgcggcg 599 Query: 299 tcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatgaac 358 |||||||||||| |||| | ||||||| ||| |||| || ||||| | | |||| | Sbjct: 600 tcgctggtgccgctgctccgcggcgagaccgcggaggcgaggagcggcggcgtgatgagc 659 Query: 359 gccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgcc 418 ||| |||| |||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct: 660 gccgacgccgagctctggaacgggcggttcgccatgctcggcctcgtcgcgctcgccttc 719 Query: 419 accgagatcatcaccggcgcgcc 441 |||||| || |||||||| |||| Sbjct: 720 accgagttcctcaccggctcgcc 742
>gb|AY105095.1| Zea mays PCO131564 mRNA sequence Length = 907 Score = 157 bits (79), Expect = 5e-35 Identities = 151/175 (86%) Strand = Plus / Plus Query: 284 gtgctgtccatggcgtcgctggtgccgttgcttcagggcgagagcgccgagggcagagcc 343 ||||||||| |||| |||||||||||| |||| |||||| |||||||||| ||| | Sbjct: 102 gtgctgtccgtggcctcgctggtgccgctgctcaggggcgacagcgccgaggccaggagc 161 Query: 344 ggcgccatcatgaacgccaacgcggagctctggaacggccgcttcgccatgctcggactc 403 |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 162 ggcgccgtcatgagcgccaacgccgagctctggaacggccgcttcgccatgctcggcctc 221 Query: 404 gtcgcgctcgccgccaccgagatcatcaccggcgcgcccttcatcaacgtgtaga 458 |||||||||||| ||| ||| | |||||||||| || |||||||||| ||||| Sbjct: 222 gtcgcgctcgccttcactgagtacctcaccggcgcaccgttcatcaacgcgtaga 276
>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early light-inducible protein (ELIP) (clone HV58) Length = 860 Score = 143 bits (72), Expect = 7e-31 Identities = 135/156 (86%) Strand = Plus / Plus Query: 296 gcgtcgctggtgccgttgcttcagggcgagagcgccgagggcagagccggcgccatcatg 355 ||||||||| ||||| |||| |||||| |||||| ||| ||| | || ||| |||| | Sbjct: 617 gcgtcgctgctgccgctgctgcagggccagagcgtggagagcaaatccagcggcatctgg 676 Query: 356 aacgccaacgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgcc 415 | |||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 677 agcgccgacgccgagctctggaacggccgcttcgctatgctcggcctcgtcgcgctcgcc 736 Query: 416 gccaccgagatcatcaccggcgcgcccttcatcaac 451 ||||||||| |||||||||||||||| ||| ||||| Sbjct: 737 gccaccgagttcatcaccggcgcgccgttcgtcaac 772 Score = 97.6 bits (49), Expect = 4e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 111 cctcgatctgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgcc 170 ||||| ||||||||||| | |||||||||||||| |||||||||||||||||||| || | Sbjct: 429 cctcggtctgggacgcgctcgcgttcagcggcccggcgccggagcgcatcaacggccggc 488 Query: 171 ttgccatggtgggcttcgtgacggcgctg 199 | |||||||| ||||||||| | |||||| Sbjct: 489 tggccatggtaggcttcgtggctgcgctg 517 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 36 gccgacgcaccctcgtcgtcagggcacagaccgagg 71 |||| |||||||||||||||||||| |||||||||| Sbjct: 159 gccggcgcaccctcgtcgtcagggcccagaccgagg 194
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 371 ctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgccaccgagatcatc 430 ||||||||||||||||||||||||||||| |||||||| |||||| ||||||| || || Sbjct: 646 ctctggaacggccgcttcgccatgctcgggctcgtcgccctcgccttcaccgagttcctc 705 Query: 431 accggcgcgcccttcatcaacgt 453 |||||| | |||||| ||||||| Sbjct: 706 accggctctcccttcctcaacgt 728 Score = 58.0 bits (29), Expect = 3e-05 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||| ||| || |||||||| || ||||||||||| || || ||| Sbjct: 395 tgggacgtgctggcgttca-cgggccggcgccggaacggatcaacgggcggctggcgatg 453 Query: 179 gtgggcttcgtgacggcgctggcggtgga 207 ||||| |||||| | |||||||| ||||| Sbjct: 454 gtggggttcgtgtccgcgctggccgtgga 482
>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 818 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 371 ctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgccaccgagatcatc 430 ||||||||||||||||||||||||||||| |||||||| |||||| ||||||| || || Sbjct: 581 ctctggaacggccgcttcgccatgctcgggctcgtcgccctcgccttcaccgagttcctc 640 Query: 431 accggcgcgcccttcatcaacgt 453 |||||| | |||||| ||||||| Sbjct: 641 accggctctcccttcctcaacgt 663 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||| ||| || |||||||| || ||||||||||| || || ||| Sbjct: 330 tgggacgtgctggcgttcaacgggccggcgccggaacggatcaacgggcggctggcgatg 389 Query: 179 gtgggcttcgtgacggcgctggcggtgga 207 ||||| |||||| ||||||| || ||||| Sbjct: 390 gtggggttcgtgtcggcgctcgccgtgga 418
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || |||||||||| ||||||||||| || || ||| Sbjct: 9470816 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacgggcggctggcgatg 9470757 Query: 179 gtgggcttcgtgacggcgctggcggtggaggc 210 ||||| |||||| ||||||| || |||||||| Sbjct: 9470756 gtggggttcgtgtcggcgctcgccgtggaggc 9470725
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 79.8 bits (40), Expect = 9e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || |||||||||| ||||||||||| || || ||| Sbjct: 84377 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacgggcggctggcgatg 84318 Query: 179 gtgggcttcgtgacggcgctggcggtggaggc 210 ||||| |||||| ||||||| || |||||||| Sbjct: 84317 gtggggttcgtgtcggcgctcgccgtggaggc 84286
>dbj|D85513.1| Oryza sativa (japonica cultivar-group) ELIP mRNA, partial sequence Length = 296 Score = 71.9 bits (36), Expect = 2e-09 Identities = 73/85 (85%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 353 atgaacgccaacgcggagctctggaac-ggccgcttcgccatgctcggactcgtcgcgct 411 |||| |||| || | |||||||||||| || || |||||||||||||| ||||||||||| Sbjct: 37 atgancgccgacnccgagctctggaacnggncggttcgccatgctcggcctcgtcgcgct 96 Query: 412 cgccgccaccgagatcatcaccggc 436 |||| ||||||| || |||||||| Sbjct: 97 cgccttcaccgagttcctcaccggc 121
>ref|XM_468708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 669 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || || ||||||| ||||||||||| || || ||| Sbjct: 250 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 309 Query: 179 gtgggcttcgtgacggcgctggcggtggaggc 210 ||||| |||||| ||| ||| || |||||||| Sbjct: 310 gtggggttcgtgccggtgctcgccgtggaggc 341
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || || ||||||| ||||||||||| || || ||| Sbjct: 17148521 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 17148462 Query: 179 gtgggcttcgtgacggcgctggcggtggaggc 210 ||||| |||||| ||| ||| || |||||||| Sbjct: 17148461 gtggggttcgtgccggtgctcgccgtggaggc 17148430 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 381 gccgcttcgccatgctcggactcgtcgc 408 |||||| |||||||||||| |||||||| Sbjct: 6359973 gccgctgcgccatgctcggcctcgtcgc 6359946
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || || ||||||| ||||||||||| || || ||| Sbjct: 39914 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 39855 Query: 179 gtgggcttcgtgacggcgctggcggtggaggc 210 ||||| |||||| ||| ||| || |||||||| Sbjct: 39854 gtggggttcgtgccggtgctcgccgtggaggc 39823
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || || ||||||| ||||||||||| || || ||| Sbjct: 17142090 tgggacgtgctggcgttcagcgggccggcaacggagcggatcaacgggcggctggcgatg 17142031 Query: 179 gtgggcttcgtgacggcgctggcggtggaggc 210 ||||| |||||| ||| ||| || |||||||| Sbjct: 17142030 gtggggttcgtgccggtgctcgccgtggaggc 17141999 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 381 gccgcttcgccatgctcggactcgtcgc 408 |||||| |||||||||||| |||||||| Sbjct: 6359186 gccgctgcgccatgctcggcctcgtcgc 6359159
>emb|AJ242806.1|SST242806 Sporobolus stapfianus partial mRNA for putative early light-inducible protein (ELIP) Length = 246 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 363 acgcggagctctggaacggccgcttcgccatgctcggactcgtcgcgctcgccgccaccg 422 |||| |||||||||||||||||| ||||||||| || |||||||||| || ||||||| Sbjct: 6 acgccgagctctggaacggccgcgccgccatgcttgggatcgtcgcgcttgcagccaccg 65 Query: 423 a 423 | Sbjct: 66 a 66
>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence Length = 142814 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || |||||||||| |||||| |||| || || ||| Sbjct: 137716 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacaggcggctggcgatg 137657 Query: 179 gtgggcttcgt 189 ||||| ||||| Sbjct: 137656 gtggggttcgt 137646
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 119 tgggacgcgatggcgttcagcggccctgcgccggagcgcatcaacgggcgccttgccatg 178 ||||||| | ||||||||||||| || |||||||||| |||||| |||| || || ||| Sbjct: 11129061 tgggacgtgctggcgttcagcgggccggcgccggagccgatcaacaggcggctggcgatg 11129002 Query: 179 gtgggcttcgt 189 ||||| ||||| Sbjct: 11129001 gtggggttcgt 11128991
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 282 cggtgctgtccatggcgtcgctggtgc 308 |||||||||| |||||||||||||||| Sbjct: 926683 cggtgctgtcgatggcgtcgctggtgc 926709
>ref|NM_210365.1| Eremothecium gossypii AER153Wp (AER153W), mRNA Length = 2247 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 282 cggtgctgtccatggcgtcgctggtgc 308 |||||||||| |||||||||||||||| Sbjct: 734 cggtgctgtcgatggcgtcgctggtgc 760
>dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full insert sequence Length = 1258 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 167 cgccttgccatggtgggcttcgtgacggcgctggcggtggag 208 ||||| |||||||||| |||| ||||||| ||||||||||| Sbjct: 412 cgcctcgccatggtggcgttcgcgacggcggtggcggtggag 453
>ref|XM_482221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1802 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tgctgtccatggcgtcgctgg 305 ||||||||||||||||||||| Sbjct: 570 tgctgtccatggcgtcgctgg 590
>ref|XM_956517.1| Neurospora crassa OR74A hypothetical protein (NCU00998.1) partial mRNA Length = 3357 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 cggcgctggcggtggaggcag 212 ||||||||||||||||||||| Sbjct: 3225 cggcgctggcggtggaggcag 3245
>ref|XM_326490.1| Neurospora crassa OR74A hypothetical protein (NCU00998.1) partial mRNA Length = 3357 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 cggcgctggcggtggaggcag 212 ||||||||||||||||||||| Sbjct: 3225 cggcgctggcggtggaggcag 3245
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 415 cgccaccgagatcatcaccgg 435 ||||||||||||||||||||| Sbjct: 3187548 cgccaccgagatcatcaccgg 3187528
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tgctgtccatggcgtcgctgg 305 ||||||||||||||||||||| Sbjct: 18770267 tgctgtccatggcgtcgctgg 18770287 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cgtcgcgctcgccgccaccg 422 |||||||||||||||||||| Sbjct: 15922346 cgtcgcgctcgccgccaccg 15922327
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cggagcgcatcaacgggcgccttgc 174 |||||||||||||||| |||||||| Sbjct: 947442 cggagcgcatcaacggccgccttgc 947466
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tgctgtccatggcgtcgctgg 305 ||||||||||||||||||||| Sbjct: 73716 tgctgtccatggcgtcgctgg 73736
>dbj|AK069665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027H24, full insert sequence Length = 1802 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 tgctgtccatggcgtcgctgg 305 ||||||||||||||||||||| Sbjct: 570 tgctgtccatggcgtcgctgg 590
>ref|NM_183622.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 627 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gacggcgctggcggtggagg 209 |||||||||||||||||||| Sbjct: 390 gacggcgctggcggtggagg 409
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gcttcgtgacggcgctggcg 202 |||||||||||||||||||| Sbjct: 3403870 gcttcgtgacggcgctggcg 3403851
>ref|XM_481844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 303 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cgtcgcgctcgccgccaccg 422 |||||||||||||||||||| Sbjct: 69 cgtcgcgctcgccgccaccg 50
>ref|XM_476698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1902 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgatctgggacgcgatggcg 133 |||||||||||||||||||| Sbjct: 780 cgatctgggacgcgatggcg 799
>ref|XM_506171.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.127 mRNA Length = 1913 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgatctgggacgcgatggcg 133 |||||||||||||||||||| Sbjct: 792 cgatctgggacgcgatggcg 811
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gacggcgctggcggtggagg 209 |||||||||||||||||||| Sbjct: 235880 gacggcgctggcggtggagg 235861
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cggccgcttcgccatgctcg 398 |||||||||||||||||||| Sbjct: 3084843 cggccgcttcgccatgctcg 3084862
>gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence Length = 104578 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 cgccaccgagatcatcaccg 434 |||||||||||||||||||| Sbjct: 70375 cgccaccgagatcatcaccg 70394
>ref|XM_542111.2| PREDICTED: Canis familiaris similar to neuropathy target esterase (LOC484993), mRNA Length = 4425 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 ggcggtggaggcaggccgcg 218 |||||||||||||||||||| Sbjct: 2253 ggcggtggaggcaggccgcg 2272
>ref|XM_541235.2| PREDICTED: Canis familiaris similar to C34E11.3 (LOC484118), mRNA Length = 3449 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 agagcgccgagggcagagccggcg 347 |||||||||||||||| ||||||| Sbjct: 956 agagcgccgagggcagcgccggcg 979
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the HHEX gene for hematopoietically expressed homeobox, the 5' end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a eukaryotic translation initiation factor 2 subunit 2 (eIF-2-beta) pseudogene and four CpG islands, complete sequence Length = 190144 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 gcggtggaggcaggccgcggcgac 223 ||||||||||||||||||| |||| Sbjct: 184479 gcggtggaggcaggccgcgccgac 184456
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cgtgacggcgctggcggtgg 206 |||||||||||||||||||| Sbjct: 1191993 cgtgacggcgctggcggtgg 1191974
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 381 gccgcttcgccatgctcggactcgtcgc 408 |||||| |||||||||||| |||||||| Sbjct: 40099 gccgctgcgccatgctcggcctcgtcgc 40072
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ccgccaccgagatcatcacc 433 |||||||||||||||||||| Sbjct: 1946871 ccgccaccgagatcatcacc 1946852
>gb|AY113628.1| Drosophila melanogaster RH71315 full insert cDNA Length = 2311 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tcgtgacggcgctggcggtggagg 209 |||| ||||||||||||||||||| Sbjct: 234 tcgttacggcgctggcggtggagg 257
>gb|AF285058.1| Carex castanea internal transcribed spacer 1, complete sequence; 5.8S ribosomal RNA and internal transcribed spacer 2, complete sequence Length = 612 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 gcaggccgcggcgacgggctcctc 232 |||||||||||||||| ||||||| Sbjct: 591 gcaggccgcggcgacgtgctcctc 568
>gb|AF027485.1| Carex arctata country Canada:Manitoba 5.8S ribosomal RNA gene, partial sequence; and internal transcribed spacer 2, complete sequence Length = 239 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 gcaggccgcggcgacgggctcctc 232 |||||||||||||||| ||||||| Sbjct: 218 gcaggccgcggcgacgtgctcctc 195
>ref|NM_134689.1| Drosophila melanogaster CG2794-RA (CG2794), mRNA Length = 2310 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tcgtgacggcgctggcggtggagg 209 |||| ||||||||||||||||||| Sbjct: 242 tcgttacggcgctggcggtggagg 265
>gb|AY659972.1| Uncultured bacterium isolate DGGE band #5 putative UreC gene, partial cds Length = 303 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 caccgagatcatcaccggcg 437 |||||||||||||||||||| Sbjct: 15 caccgagatcatcaccggcg 34
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ctcggactcgtcgcgctcgccgcc 418 |||||||||||||||| ||||||| Sbjct: 1831505 ctcggactcgtcgcgcacgccgcc 1831482
>gb|AC008002.3|AC008002 Drosophila melanogaster, chromosome 2L, region 21D-21E, BAC clone BACR48E08, complete sequence Length = 182726 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 tcgtgacggcgctggcggtggagg 209 |||| ||||||||||||||||||| Sbjct: 92896 tcgttacggcgctggcggtggagg 92873
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0706B05 Length = 187835 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gacggcgctggcggtggagg 209 |||||||||||||||||||| Sbjct: 138744 gacggcgctggcggtggagg 138725
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 cgccgccaccgagatcatca 431 |||||||||||||||||||| Sbjct: 2806559 cgccgccaccgagatcatca 2806540
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 cgtcgcgctcgccgccaccg 422 |||||||||||||||||||| Sbjct: 102389 cgtcgcgctcgccgccaccg 102370
>emb|Z18809.1|OSELIMR O.sensibilis mRNA for early light inducible protein (partial) Length = 774 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 173 gccatggtgggcttcgtgacggcgctgg 200 |||||||||||||||||| |||||||| Sbjct: 402 gccatggtgggcttcgtgtgggcgctgg 429
>dbj|AK098844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B24, full insert sequence Length = 1902 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgatctgggacgcgatggcg 133 |||||||||||||||||||| Sbjct: 780 cgatctgggacgcgatggcg 799
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 cggccgcttcgccatgctcg 398 |||||||||||||||||||| Sbjct: 2299586 cggccgcttcgccatgctcg 2299567 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cggcgctggcggtggaggca 211 |||||||||||||||||||| Sbjct: 2084536 cggcgctggcggtggaggca 2084555
>dbj|AK065047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I08, full insert sequence Length = 1915 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgatctgggacgcgatggcg 133 |||||||||||||||||||| Sbjct: 792 cgatctgggacgcgatggcg 811
>gb|AY111120.1| Zea mays CL23394_1 mRNA sequence Length = 644 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 cgctggtgccgttgcttcag 319 |||||||||||||||||||| Sbjct: 321 cgctggtgccgttgcttcag 340
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cgatctgggacgcgatggcg 133 |||||||||||||||||||| Sbjct: 100960 cgatctgggacgcgatggcg 100979
>gb|AE003589.4| Drosophila melanogaster chromosome 2L, section 2 of 83 of the complete sequence Length = 306076 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tcgtgacggcgctggcggtggagg 209 |||| ||||||||||||||||||| Sbjct: 258571 tcgttacggcgctggcggtggagg 258594
>gb|AC004573.1|AC004573 Drosophila melanogaster, chromosome 2L, region 21C5-21D1, P1 clone DS07610, complete sequence Length = 85095 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 tcgtgacggcgctggcggtggagg 209 |||| ||||||||||||||||||| Sbjct: 24001 tcgttacggcgctggcggtggagg 24024
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 atcatgctcgtattctttgt 556 |||||||||||||||||||| Sbjct: 851005 atcatgctcgtattctttgt 850986
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 ctcggactcgtcgcgctcgccgcc 418 |||||||||||||||| ||||||| Sbjct: 2749192 ctcggactcgtcgcgcacgccgcc 2749215 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,377,350 Number of Sequences: 3902068 Number of extensions: 3377350 Number of successful extensions: 72361 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70440 Number of HSP's gapped (non-prelim): 1906 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
