ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4i20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VITA2_XENLA (P18709) Vitellogenin A2 precursor (VTG A2) [Contain... 29 2.7
2LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor 29 2.7
3AMPR_YEREN (P45461) HTH-type transcriptional activator ampR 28 4.6
4ABCA_AERSA (Q07698) ABC transporter protein abcA 28 7.9

>VITA2_XENLA (P18709) Vitellogenin A2 precursor (VTG A2) [Contains: Lipovitellin|
            I; Lipovitellin II; Phosvitin]
          Length = 1807

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = -2

Query: 282  FFDTNSVFYFSTRGTEHRGNCDSNRLFFRRSRGYELTIEST-----HVYQYHGQSILAIL 118
            F+D N      T+GTEHRG+        R S   E +  S+     H  ++ G     +L
Sbjct: 1287 FYDLNFRRTARTKGTEHRGS--------RLSSSSESSSSSSESAYRHKAKFLGDKEPPVL 1338

Query: 117  FDSREAFQAENTISGRYVLVSQQFTHXQKIQ 25
              + +A + +NT  G  ++V Q++ H  K Q
Sbjct: 1339 VVTFKAVRNDNTKQGYQMVVYQEY-HSSKQQ 1368



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>LPQT_MYCTU (P96384) Putative lipoprotein lpqT precursor|
          Length = 226

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
 Frame = +3

Query: 54  G*RVHTYRRWCFPPEMPP*SQREL---------QECSAHDTDIHALI 167
           G R+HT+ R  FP   PP  QR L          E   H +DI A+I
Sbjct: 172 GRRLHTWNRIVFPTGAPPAKQRYLVQLTITSLANEAVKHASDIEAII 218



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>AMPR_YEREN (P45461) HTH-type transcriptional activator ampR|
          Length = 294

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -2

Query: 273 TNSVFYFSTRGTEHRGNCDSNRLFFRRSRGYELTIESTHVYQYHGQSILAILFDS 109
           T++      +  E R NC   RLF R SRG  LT E        G+++L IL DS
Sbjct: 33  THAAISQQVKALEQRLNC---RLFIRISRGLVLTTE--------GENLLPILNDS 76



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>ABCA_AERSA (Q07698) ABC transporter protein abcA|
          Length = 308

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 49  LLADEYIPTGDGVFRLKCLPRVKENCKNALPMILI 153
           L+ DE +  GD  F+ KC  R+K+     + ++L+
Sbjct: 167 LIIDEALAVGDDAFQRKCYARLKQLQSQGVTILLV 201


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,780,599
Number of Sequences: 219361
Number of extensions: 599564
Number of successful extensions: 1455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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