ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4i18 |
|---|---|
| Clone Library Name | barley_pub |
>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2336 Score = 32.3 bits (72), Expect = 0.79 Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Frame = +2 Query: 122 GVTKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGP----DGSMTPEATDEQGTWQM 289 G + P KPS P+S + +E P S++ P G+ TP G Q+ Sbjct: 2131 GSREPPQPKPSLSSHPISPTAALEPGPHPQGSGSVNGSPLMSTSGASTP---GRGGRRQL 2187 Query: 290 WSTPLVQDTLGLRGPQTQWLLPNKD--QFNHGVSNLNGGTRNPLGAGLHDSDLWLQKSPF 463 TPL P + N F G S L + L GL + + LQK P Sbjct: 2188 PQTPLTP------RPSITYKTANSSPVHFAEGQSGLPAFSPGRLSRGLSEHNALLQKEPL 2241 Query: 464 QQ 469 Q Sbjct: 2242 SQ 2243
>BSCL2_BOVIN (Q5E9P6) Seipin (Bernardinelli-Seip congenital lipodystrophy type 2| protein homolog) Length = 394 Score = 32.3 bits (72), Expect = 0.79 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 116 LSGVTK--EPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPEATDEQGTWQ 286 LS VT+ E H PS E LS E++P+ + + PEA+D G+W+ Sbjct: 304 LSPVTEDGESHADPSGTEGQLSEEEKTEQQPLSGEE---------ELEPEASDGSGSWE 353
>PKN2_COREF (Q8FUI4) Serine/threonine protein kinases drp72 (EC 2.7.11.1)| Length = 520 Score = 31.6 bits (70), Expect = 1.3 Identities = 28/95 (29%), Positives = 35/95 (36%) Frame = +2 Query: 128 TKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPEATDEQGTWQMWSTPLV 307 T++P P+P E+P T +E P + S TPE TDE G +TP Sbjct: 403 TRQP--VPTPDETPTRLPTTTQESPTRVSP-----------TPEETDEPGE---QTTPGG 446 Query: 308 QDTLGLRGPQTQWLLPNKDQFNHGVSNLNGGTRNP 412 Q L W N G N G NP Sbjct: 447 QPPLSTLPTSLGWQNNQGGTGNQGNPNTTGNPANP 481
>CR2AC_BACTU (Q45743) Pesticidal crystal protein cry2Ac (Insecticidal| delta-endotoxin CryIIA(c)) (Crystaline entomocidal protoxin) (70 kDa crystal protein) Length = 622 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/80 (30%), Positives = 34/80 (42%) Frame = +2 Query: 236 PDGSMTPEATDEQGTWQMWSTPLVQDTLGLRGPQTQWLLPNKDQFNHGVSNLNGGTRNPL 415 P GS+ + T Q + L DTLG + L N +FN V N +NP+ Sbjct: 83 PSGSIDLMQEILRATEQFINQRLNADTLGRVNAELAGLQANVAEFNRQVDNFLNPNQNPV 142 Query: 416 GAGLHDSDLWLQKSPFQQLP 475 + DS LQ+ +LP Sbjct: 143 PLAIIDSVNTLQQLFLSRLP 162
>YOJ3_CAEEL (P34626) Hypothetical protein ZK353.3| Length = 164 Score = 30.4 bits (67), Expect = 3.0 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 11/84 (13%) Frame = +2 Query: 41 DAIALLGPVSESLDNFPPD---WDNRFT-LSGVTKEPHVKPSPIESPLSRSRTVEEKP-I 205 D+ +LGP ++ D D +DN +S + P KPSP +E P I Sbjct: 72 DSQMMLGPPKKANDQSASDCSIYDNLVVPMSELGPTPGNKPSP--------NPIEGAPMI 123 Query: 206 KPSQFSISRGPDGS------MTPE 259 +P Q ++SR PD S MTPE Sbjct: 124 RPPQDTVSRAPDNSIYDTLQMTPE 147
>POLG_DEN1W (P17763) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A)] (Fragment) Length = 1226 Score = 30.4 bits (67), Expect = 3.0 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = +2 Query: 65 VSESLDNFPPDWDNRFTL-----SGVTKEPH--VKPSPIESPLSRSRTVEEKPIKPSQFS 223 +S L++ + D +FT+ SG+ + ++P P+E S + K I + Sbjct: 846 ISNELNHILLENDMKFTVVVGDVSGILAQGKKMIRPQPMEHKYSWKSWGKAKIIGADVQN 905 Query: 224 ISRGPDGSMTPEATDEQGTWQMW 292 + DG TPE D Q W +W Sbjct: 906 TTFIIDGPNTPECPDNQRAWNIW 928
>C1QR1_HUMAN (Q9NPY3) Complement component C1q receptor precursor (Complement| component 1, q subcomponent, receptor 1) (C1qR) (C1qRp) (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (CDw93) Length = 652 Score = 30.4 bits (67), Expect = 3.0 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Frame = +2 Query: 56 LGPVSESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESP--LSRSRTVEEKPIKPSQFSIS 229 +GPVS + PPD +++ G T SP P ++ +P S I+ Sbjct: 469 MGPVSLGPPSGPPDEEDKGEKEGSTVPRAATASPTRGPEGTPKATPTTSRPSLSSDAPIT 528 Query: 230 RGPDGSMTPEATDEQGTWQMWSTPLVQDTLGLRGPQ 337 P + P G+ +W P + GPQ Sbjct: 529 SAPLKMLAP-----SGSPGVWREPSIHHATAASGPQ 559
>CH60_BLOFL (Q7U348) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 547 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 2 EELERFEDPCYDPDAIALLGPVSESLD 82 EEL++ PC DP AIA +G +S + D Sbjct: 129 EELKKLSVPCSDPKAIAQVGTISANSD 155
>CFTR_SQUAC (P26362) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1492 Score = 30.0 bits (66), Expect = 3.9 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +2 Query: 347 LLPNKDQ--FNHGVSNLNGGTRNPLG---AGLHDSDLWLQKSPFQQLPLDTE 487 + PNKD+ G L+GG R + A D+DL+L SPF L + TE Sbjct: 533 VFPNKDKTVLGDGGITLSGGQRARISLARALYKDADLYLLDSPFSHLDVTTE 584
>HCHA_STAAN (P64313) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = -3 Query: 297 VLHICHVPCSSVASGVMEPSGPLEIENCDGFIGFSSTV--RDLDRGDSIGDGLTCGSFVT 124 ++ +CH P + +++G+ PLE G+S V LD G +I G G + Sbjct: 186 IVTLCHGPAALLSAGLNREKSPLE--------GYSVCVFPDSLDEGANIEIGYLPGR-LK 236 Query: 123 PLKVNLLSQSGGKLSRDSETG 61 L +LL++ G K+ D TG Sbjct: 237 WLVADLLTKQGLKVVNDDMTG 257
>HCHA_STAAM (P64312) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = -3 Query: 297 VLHICHVPCSSVASGVMEPSGPLEIENCDGFIGFSSTV--RDLDRGDSIGDGLTCGSFVT 124 ++ +CH P + +++G+ PLE G+S V LD G +I G G + Sbjct: 186 IVTLCHGPAALLSAGLNREKSPLE--------GYSVCVFPDSLDEGANIEIGYLPGR-LK 236 Query: 123 PLKVNLLSQSGGKLSRDSETG 61 L +LL++ G K+ D TG Sbjct: 237 WLVADLLTKQGLKVVNDDMTG 257
>HCHA_STAAC (Q5HIC4) Chaperone protein hchA (Hsp31)| Length = 292 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = -3 Query: 297 VLHICHVPCSSVASGVMEPSGPLEIENCDGFIGFSSTV--RDLDRGDSIGDGLTCGSFVT 124 ++ +CH P + +++G+ PLE G+S V LD G +I G G + Sbjct: 186 IVTLCHGPAALLSAGLNREKSPLE--------GYSVCVFPDSLDEGANIEIGYLPGR-LK 236 Query: 123 PLKVNLLSQSGGKLSRDSETG 61 L +LL++ G K+ D TG Sbjct: 237 WLVADLLTKQGLKVVNDDMTG 257
>PBPA_XYLFT (Q87AW7) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:| Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)] Length = 809 Score = 29.6 bits (65), Expect = 5.1 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 10/108 (9%) Frame = +2 Query: 179 SRTVEEKPIK----PSQFSISRGPDGSMTPEATDEQGTWQMWSTPLVQDTLGLRGPQTQW 346 ++T KP+K P+Q S P+ M P A DE+ +Q+ S +++D + LRG T Sbjct: 633 TKTEPSKPVKNNNEPTQTIPSPDPNTPMAPRAIDERVVFQLVS--MMRDVV-LRGTATAA 689 Query: 347 LLPNKDQFNHGVSNLNGGTRNPLGA------GLHDSDLWLQKSPFQQL 472 N+ ++ G T A G + + +W+ + FQ L Sbjct: 690 RSLNRQD----IAGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFQSL 733
>NADD_RHOBA (Q7UFN6) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 214 Score = 29.6 bits (65), Expect = 5.1 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = +2 Query: 365 QFNHGVSNLNGGTRNPLGAGLHDSDLWLQKSPFQQLPLD 481 Q NHG+ L GG+ +P+ H LW+ +S +QLP++ Sbjct: 9 QSNHGIGIL-GGSFDPV----HVGHLWMAESALEQLPIE 42
>FOI_DROME (Q9VSL7) Zinc transporter foi precursor (Protein fear-of-intimacy)| (Protein kastchen) Length = 706 Score = 29.6 bits (65), Expect = 5.1 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Frame = +2 Query: 182 RTVEEKPIK-PSQFSISRGPDGSMTPEATDEQGTWQMWST-PLVQDTLGLRGPQTQWL 349 ++VE+K K PS+ + R PD S+ ++ Q +S+ P D + + Q++W+ Sbjct: 355 KSVEKKETKKPSRAKVMRDPDSSVNNSVAGDKICKQKYSSYPYCYDEITMNNKQSEWM 412
>PLMN_RAT (Q01177) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Angiostatin; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 29.3 bits (64), Expect = 6.7 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 161 ESPLSRSRTVEEKPIKPSQFSISRGPDGSMTP--EATDEQGTWQMWSTP 301 ++P +RT E P K + + R PDG P TD Q W+ P Sbjct: 302 QTPHRHNRTPENFPCKNLEENYCRNPDGETAPWCYTTDSQLRWEYCEIP 350
>PLMN_PIG (P06867) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 790 Score = 29.3 bits (64), Expect = 6.7 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Frame = +2 Query: 161 ESPLSRSRTVEEKPIKPSQFSISRGPDGSMTP--EATDEQGTWQMWSTP 301 +SP +RT E P K + + R PDG P TD + W P Sbjct: 283 QSPHKHNRTPENFPCKNLEENYCRNPDGETAPWCYTTDSEVRWDYCKIP 331
>PLMN_MOUSE (P20918) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Angiostatin; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 29.3 bits (64), Expect = 6.7 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +2 Query: 161 ESPLSRSRTVEEKPIKPSQFSISRGPDGSMTP--EATDEQGTWQMWSTP 301 ++P +RT E P K + + R PDG P TD Q W+ P Sbjct: 302 QTPHRHNRTPENFPCKNLEENYCRNPDGETAPWCYTTDSQLRWEYCEIP 350
>Y3185_PHOLL (Q7N2A3) UPF0209 protein plu3185| Length = 680 Score = 29.3 bits (64), Expect = 6.7 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -3 Query: 501 ERNRLSVSRGNCWKGDFCSHKSLSCKPAPRGF 406 E R GNC+ FC+H SC A GF Sbjct: 36 EETRYVFLNGNCFPQRFCTHSRSSCVIAETGF 67
>ZN407_HUMAN (Q9C0G0) Zinc finger protein 407 (Fragment)| Length = 1165 Score = 29.3 bits (64), Expect = 6.7 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 101 DNRFTLSGVTKEPHVKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPEATDEQ 274 D+ FT + + +EP VK E PL SR P + Q I +G DG + + E+ Sbjct: 748 DSPFTAAALAEEPLVK----EKPLRSSRRPAPPPEQVQQVIIFQGYDGEFALDPSVEE 801
>HUS2_SCHPO (Q09811) ATP-dependent DNA helicase hus2/rqh1 (EC 3.6.1.-)| Length = 1328 Score = 29.3 bits (64), Expect = 6.7 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Frame = +2 Query: 95 DWDNRFTLSGVTKEPHV----KPSPI--ESPLSRSRTVEEKPIKPSQFS 223 D +NR +S +K + KP+PI E+P+S + E PIKP + S Sbjct: 168 DVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPIKPKELS 216
>CJ012_HUMAN (Q8N655) Protein C10orf12| Length = 1247 Score = 28.9 bits (63), Expect = 8.7 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 13/98 (13%) Frame = +2 Query: 131 KEPHVKPSPIESPLSRSRTVEEKPIK------PSQFSISRGPDGSMTPEATDEQGTWQMW 292 +EP V P+ I+ LS S EE P+ P+G T A G Sbjct: 279 QEPEVCPTKIKPNLSSSPRSEETTASSLVWPLPAHLPEEDLPEGGSTVSAPTASGM---- 334 Query: 293 STP-------LVQDTLGLRGPQTQWLLPNKDQFNHGVS 385 S+P + DT + PQ LLP+ + F+ GVS Sbjct: 335 SSPEHNQPPVALLDTEEMSVPQDCHLLPSTESFSGGVS 372
>PBPA_XYLFA (Q9PGD4) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:| Penicillin-insensitive transglycosylase (EC 2.4.2.-) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)] Length = 809 Score = 28.9 bits (63), Expect = 8.7 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%) Frame = +2 Query: 179 SRTVEEKPIK----PSQFSISRGPDGSMTPEATDEQGTWQMWSTPLVQDTLGLRGPQTQW 346 ++T KP+K P Q S P+ M P A DE+ +Q+ S +++D + LRG T Sbjct: 633 TKTEPSKPVKNNNEPPQTIPSPDPNTPMAPRAIDERVVFQLVS--MMRDVV-LRGTATAA 689 Query: 347 LLPNKDQFNHGVSNLNGGTRNPLGA------GLHDSDLWLQKSPFQQL 472 N+ ++ G T A G + + +W+ + FQ L Sbjct: 690 RSLNRQD----IAGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFQSL 733
>Y663_METJA (Q58077) Hypothetical protein MJ0663| Length = 494 Score = 28.9 bits (63), Expect = 8.7 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -3 Query: 285 CHVPCSSVASGVMEPSGPLEIENCDGFIGFSSTVRDLDRGD---SIGDGLTCGSFVTPLK 115 C + + A GV+ ++ENC G +G ++ L D +IG L+ ++V ++ Sbjct: 222 CPIATTFPARGVINE----KLENCIGLVGRRGDLKSLLEADKIINIGSSLSYNTYVESVR 277 Query: 114 VNLLSQS 94 LLS++ Sbjct: 278 EKLLSKT 284
>POLG_DEN1S (P33478) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3396 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +2 Query: 143 VKPSPIESPLSRSRTVEEKPIKPSQFSISRGPDGSMTPEATDEQGTWQMW 292 ++P P+E S + K I + + DG TPE D+Q W +W Sbjct: 878 IRPQPMEHKYSWKSWGKAKIIGADIQNTTFIIDGPDTPECPDDQRAWNIW 927
>CAC1B_MOUSE (O55017) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2327 Score = 28.9 bits (63), Expect = 8.7 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 10/93 (10%) Frame = +2 Query: 20 EDPCYDPDAIAL--LGPVS-------ESLDNFPPDWDNRFTLSGVTKEPHVKPSPIESPL 172 ++P D +AIA+ +GP+ + +D P D DN+ ++ + +P + + P+ Sbjct: 1012 KEPHCDLEAIAVTGVGPLHMLPSTCLQKVDEQPEDADNQRNVTRMGSQPSDPSTTVHVPV 1071 Query: 173 SRSRTVEEKPIKPS-QFSISRGPDGSMTPEATD 268 + + E P+ PS ++ +G EA D Sbjct: 1072 TLTGPPGETPVVPSGNMNLEGQAEGKKEAEADD 1104 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,480,423 Number of Sequences: 219361 Number of extensions: 1905545 Number of successful extensions: 5424 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5408 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
