ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4i16 |
|---|---|
| Clone Library Name | barley_pub |
>Y5161_ARATH (Q9M015) Protein At5g01610| Length = 170 Score = 35.0 bits (79), Expect = 0.10 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%) Frame = +3 Query: 177 ELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQKKALTHTFKQI-------GRQVSYAT 335 ELL E +LP+G+ P AT + + + K LT I + + T Sbjct: 56 ELLKEYDLPIGIFP---------GDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106 Query: 336 EVTAFVEDRKMKRMTGVKSKELLIWITLCDMYIDKDDPSKITF 464 VT +E K+ + G+K+K ++IW+ + + D SK+ F Sbjct: 107 TVTGHLEKGKLTDVEGIKTK-VMIWVKVTSI---STDASKVYF 145
>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (RERG) (ra-erg) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1161 Score = 32.7 bits (73), Expect = 0.52 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Frame = -3 Query: 479 PGGRLEGDLGGVILVDVHITEGDPDEEFLALD-----PGHALHLAVLDEGRHLGGVRDLP 315 PGG G ++VDV +T P E LALD H L +E R L G P Sbjct: 182 PGGAGGAGAPGAVVVDVDLTPAAPSSESLALDEVPAMDNHVAGLGPAEERRALVGSCSPP 241 Query: 314 P 312 P Sbjct: 242 P 242
>RLUB_PSEAE (Q9HZ55) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 386 Score = 32.7 bits (73), Expect = 0.52 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +2 Query: 245 QPRHRLRLASPEEGA-HAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 418 Q R R PE G A + D E R RGPQ A +G+EQGTP + P Sbjct: 279 QARPLARSERPEAGRKRAPRREDGENAARRAPASRPARGPQPSAERKGREQGTPVAERP 337
>KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (c-erg) (DERG) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1158 Score = 32.3 bits (72), Expect = 0.67 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Frame = -3 Query: 479 PGGRLEGDLGGVILVDVHITEGDPDEEFLALD-----PGHALHLAVLDEGRHLGGVRDLP 315 PGG G ++VDV ++ P E LALD H L ++E R L G P Sbjct: 182 PGGVGSAGAPGAVVVDVDLSPAVPSRESLALDEVTAMDNHVAGLGPMEEQRALVGSSSPP 241 Query: 314 ---PDLLEGVRERLLLAKPDEAGGA 249 P+ L R L PD +G + Sbjct: 242 AGAPEPLPSPRAHSL--NPDASGSS 264
>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)| Length = 558 Score = 28.5 bits (62), Expect(2) = 0.77 Identities = 17/55 (30%), Positives = 20/55 (36%) Frame = +2 Query: 254 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 418 H P G H+H D G +G R GP H RG + P HP Sbjct: 282 HPAEYGGPHGGYHSHYH-DEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHP 335 Score = 22.3 bits (46), Expect(2) = 0.77 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +3 Query: 93 VEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 200 V+ AQ +A GA++Y G C +E T L Sbjct: 210 VQSAQRAKASLNGADIYSG---CCTLKIEYAKPTRL 242
>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)| Length = 555 Score = 28.5 bits (62), Expect(2) = 0.77 Identities = 17/55 (30%), Positives = 20/55 (36%) Frame = +2 Query: 254 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQGTPHLDHP 418 H P G H+H D G +G R GP H RG + P HP Sbjct: 279 HPAEYGGPHGGYHSHYH-DEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHP 332 Score = 22.3 bits (46), Expect(2) = 0.77 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +3 Query: 93 VEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 200 V+ AQ +A GA++Y G C +E T L Sbjct: 207 VQSAQRAKASLNGADIYSG---CCTLKIEYAKPTRL 239
>SYFB_SYNPX (Q7U6V9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 814 Score = 30.8 bits (68), Expect = 2.0 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 6/119 (5%) Frame = +3 Query: 87 QPVEMAQ-AIEAQREGAEVY--HGAALCAEKAVELLAETNLPLGLLPLADIEEVGYNRAT 257 +PV A + REG G L +++ +LP+ L + + G AT Sbjct: 284 KPVNAASFGLRQAREGEAFIGLDGRELSLVARAQVVTCHDLPIALAGVMGSKASGVTAAT 343 Query: 258 GFVWLRQKKALTHTFKQIGRQVSYATEVTAFVEDRKMKRMT---GVKSKELLIWITLCD 425 G +WL + R V T+ +A E K MT +++ ELL + C+ Sbjct: 344 GRIWLESAMFSPAAVRTTARSVGLRTDASARFEKGLPKEMTLACSIRALELLKELFPCE 402
>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go related gene potassium channel 1) (H-ERG) (Erg1) (Ether-a-go-go related protein 1) (Eag-related protein 1) (eag homo Length = 1159 Score = 29.3 bits (64), Expect = 5.7 Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Frame = -3 Query: 476 GGRLEGDLGGVILVDVHITEGDPDEEFLALD-----PGHALHLAVLDEGRHLGGVRDLP- 315 GG G ++VDV +T P E LALD H L +E R L G P Sbjct: 183 GGAGGAGAPGAVVVDVDLTPAAPSSESLALDEVTAMDNHVAGLGPAEERRALVGPGSPPR 242 Query: 314 --PDLLEGVRERLLLAKPDEAGGA 249 P L R L PD +G + Sbjct: 243 SAPGQLPSPRAHSL--NPDASGSS 264
>Y1162_THEMA (Q9X0P5) UPF0173 metal-dependent hydrolase TM1162| Length = 226 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 126 EGAEVYHGAALCAEKAVELLAETNLPLGLLPL 221 EG ++YH + +ELLAE N+ + LP+ Sbjct: 132 EGKKIYHAGDTGLTREMELLAEENVDVAFLPI 163
>RF1_MYCPN (P75420) Peptide chain release factor 1 (RF-1)| Length = 359 Score = 29.3 bits (64), Expect = 5.7 Identities = 22/79 (27%), Positives = 34/79 (43%) Frame = +3 Query: 165 EKAVELLAETNLPLGLLPLADIEEVGYNRATGFVWLRQKKALTHTFKQIGRQVSYATEVT 344 EK VEL + L L + N+ L+ K+ L FK+ R + A E Sbjct: 12 EKIVELAEQLEKDLNKPDLTFEQIKAINKE-----LKHKQPLVVKFKEFKRLIDQALEAE 66 Query: 345 AFVEDRKMKRMTGVKSKEL 401 A +E+ ++K + KEL Sbjct: 67 AILENNELKELHDEAKKEL 85
>BIRA_BACSU (P42975) BirA bifunctional protein [Includes: Biotin operon| repressor; Biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15) (Biotin--protein ligase)] Length = 325 Score = 29.3 bits (64), Expect = 5.7 Identities = 24/87 (27%), Positives = 35/87 (40%) Frame = +3 Query: 21 KRPQQLQTVELNLSLLGEI*FIQPVEMAQAIEAQREGAEVYHGAALCAEKAVELLAETNL 200 K+P +L E+ L E+ M Q + +YH +K LA N Sbjct: 63 KKPGKLSESEIRFGLKTEV-------MGQHL--------IYHDVLSSTQKTAHELANNNA 107 Query: 201 PLGLLPLADIEEVGYNRATGFVWLRQK 281 P G L +AD + G R + VW Q+ Sbjct: 108 PEGTLVVADKQTAGRGRMSR-VWHSQE 133
>GATA_STRCO (Q9Z580) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 497 Score = 29.3 bits (64), Expect = 5.7 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +2 Query: 254 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQG 397 H R+ + +E HA L DRE L + R DE +RG++ G Sbjct: 30 HLARIEAVDEKVHAFLHVDREGALAQARA-------VDEKRERGEKLG 70
>OPT3_CAEEL (O01840) Putative oligopeptide transporter opt-3| Length = 701 Score = 29.3 bits (64), Expect = 5.7 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = -1 Query: 481 SPVGVLKVILEGSSLSMYISQRVIQMRSSLLLTPVMRFILRSST--KAVTSVAYETCLPI 308 S G KVIL GSS+ Y+ V+ SL P + + +RSS + +A+ T Sbjct: 77 SVFGRFKVILYGSSI--YVVGHVLL---SLGAVPFLSYPIRSSLDFSGLFVIAFATG--- 128 Query: 307 CLKVCVSAF 281 C+K CVSAF Sbjct: 129 CIKPCVSAF 137
>GATA_STRAW (Q82JL0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 501 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +2 Query: 254 HRLRLASPEEGAHAHLQADREAGLVRHRGDGLRRGPQDEAHDRGQEQG 397 H R+ + +E HA L DRE L + R DE +RG++ G Sbjct: 34 HLARIDAVDEKVHAFLHVDREGALAQARA-------VDEKRERGEKLG 74
>GRK6_RAT (P97711) G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G| protein-coupled receptor kinase GRK6) Length = 576 Score = 28.9 bits (63), Expect = 7.5 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 159 CAEKAVELLAETNLPLGLLPLAD-IEEVGYNRATGFVWLRQKKALTHTFKQ 308 C + EL T+ L + P AD ++ + +NR + WL ++ +TF+Q Sbjct: 138 CKDLFQELTRLTHEYLSMAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQ 188
>CTTB2_HUMAN (Q8WZ74) Cortactin-binding protein 2 (CortBP2)| Length = 1663 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Frame = -1 Query: 469 VLKVILEGSSLSMYISQRVIQMR--SSLLLTPVMRFILRSSTKAVTSVAYETCLPICLKV 296 + K L+GS L + R +Q+R + + RF+ R A C P+C V Sbjct: 1249 IAKACLQGSDLLVQQHFRWVQLRWDGEPMQGLLQRFLRRKVVNKFKGQAPSPCDPVCKIV 1308 Query: 295 CVSAFFWRSQTKPVARL 245 + WR +ARL Sbjct: 1309 DWALSVWRQLNSCLARL 1325
>MMTA2_HUMAN (Q9BU76) Multiple myeloma tumor-associated protein 2 (hMMTAG2)| Length = 263 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +2 Query: 272 SPEEGAHAHLQADREAGLVRHRG---DGLRRGPQDEAHDRGQE 391 SPE H H +D + + R G RR P HDRG E Sbjct: 220 SPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSE 262
>GRK6_HUMAN (P43250) G protein-coupled receptor kinase 6 (EC 2.7.11.16) (G| protein-coupled receptor kinase GRK6) Length = 576 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 159 CAEKAVELLAETNLPLGLLPLAD-IEEVGYNRATGFVWLRQKKALTHTFKQ 308 C + EL T+ L + P AD ++ + +NR + WL ++ +TF+Q Sbjct: 138 CKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQWKWLERQPVTKNTFRQ 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,971,099 Number of Sequences: 219361 Number of extensions: 942135 Number of successful extensions: 3505 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3504 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
