ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4i05 |
|---|---|
| Clone Library Name | barley_pub |
>PSAD_HORVU (P36213) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 205 Score = 73.6 bits (179), Expect = 1e-13 Identities = 35/35 (100%), Positives = 35/35 (100%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI Sbjct: 171 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>PSAD_NICSY (P29302) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 204 Score = 64.7 bits (156), Expect = 6e-11 Identities = 30/35 (85%), Positives = 32/35 (91%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 KVNAGRQGVGQNFRSIGKN SPIEVKFTGK +D+ Sbjct: 170 KVNAGRQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>PSAD_CUCSA (P32869) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) (PS I subunit 5) Length = 207 Score = 63.9 bits (154), Expect = 1e-10 Identities = 29/35 (82%), Positives = 32/35 (91%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 KVN GR+GVGQNFRSIGKNVSPIEVKFTGK +D+ Sbjct: 173 KVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>PSAD_SPIOL (P12353) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 212 Score = 60.5 bits (145), Expect = 1e-09 Identities = 28/35 (80%), Positives = 30/35 (85%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 KVN GRQGVG N RSIGKNVSPIEVKFTGK +D+ Sbjct: 178 KVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>PSAD1_ARATH (Q9S7H1) Photosystem I reaction center subunit II-1, chloroplast| precursor (Photosystem I 20 kDa subunit 1) (PSI-D1) Length = 208 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/35 (77%), Positives = 30/35 (85%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 K N GR+GVG N RSIGKNVSPIEVKFTGK S+D+ Sbjct: 174 KANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>PSAD2_ARATH (Q9SA56) Photosystem I reaction center subunit II-2, chloroplast| precursor (Photosystem I 20 kDa subunit 2) (PSI-D2) Length = 204 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/35 (77%), Positives = 30/35 (85%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 K N GR+GVG N RSIGKNVSPIEVKFTGK S+D+ Sbjct: 170 KANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>PSAD_LYCES (P12372) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 208 Score = 59.3 bits (142), Expect = 2e-09 Identities = 28/35 (80%), Positives = 30/35 (85%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 KVN GR+GVGQNFRSIGKN S IEVKFTGK +DI Sbjct: 174 KVNPGREGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>PSAD_CHLRE (Q39615) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 196 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/30 (66%), Positives = 25/30 (83%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGK 111 KVNAGR G QN R IG+NV+PI+VKF+G+ Sbjct: 160 KVNAGRVGANQNMRRIGQNVNPIKVKFSGR 189
>PSAD_ANASP (P58573) Photosystem I reaction center subunit II| Length = 139 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/34 (58%), Positives = 27/34 (79%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVNAGR+ V N RSIG+N +P +VKF+GK ++D Sbjct: 105 KVNAGREKVRFNARSIGENPNPSQVKFSGKATYD 138
>PSAD_PORPU (P51279) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/34 (58%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVNAGR + SIGKNV+PI VKFT K ++D Sbjct: 108 KVNAGRASINSVDHSIGKNVNPINVKFTNKATYD 141
>PSAD_GLOVI (Q7NF26) Photosystem I reaction center subunit II| Length = 144 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/35 (54%), Positives = 25/35 (71%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 K N GR+ VG R IG N +P++VKFTGK +FD+ Sbjct: 110 KSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV 144
>PSAD_ANAVT (P31089) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 41.2 bits (95), Expect = 7e-04 Identities = 19/34 (55%), Positives = 26/34 (76%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR+ V N RSIG+N +P +VKF+GK ++D Sbjct: 104 KVNPGREKVRFNARSIGENPNPSQVKFSGKATYD 137
>PSAD_GUITH (O78502) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 41.2 bits (95), Expect = 7e-04 Identities = 19/34 (55%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR GVG SIGKN++P ++KFT K+ D Sbjct: 108 KVNPGRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141
>PSAD_CYAPA (Q9T4W8) Photosystem I reaction center subunit II, cyanelle| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 220 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/34 (52%), Positives = 23/34 (67%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR VG N R IG+N P ++KF G+ +FD Sbjct: 182 KVNPGRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215
>PSAD_SYNVU (P0A422) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/34 (52%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR+ V RSIG+N +P ++KFTGK +D Sbjct: 104 KVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 137
>PSAD_SYNEN (P0A421) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/34 (52%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR+ V RSIG+N +P ++KFTGK +D Sbjct: 104 KVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 137
>PSAD_SYNEL (P0A420) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/34 (52%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR+ V RSIG+N +P ++KFTGK +D Sbjct: 104 KVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYD 137
>PSAD_CYACA (Q9TLR2) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 140 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSF 120 KVN GR+ +G+ +IGKN++P EVKFT K F Sbjct: 108 KVNEGRKPIGKIDHNIGKNLNPAEVKFTHKTIF 140
>PSAD_SYNY3 (P19569) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 140 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 126 KVN GR+ G R IG+N P+ +KF+GK +++ Sbjct: 106 KVNEGREAQGTKTRRIGQNPEPVTIKFSGKAPYEV 140
>PSAD_MASLA (O07115) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 142 Score = 36.6 bits (83), Expect = 0.017 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GRQ V N R IG+N P ++KF+G ++D Sbjct: 105 KVNPGRQKVRYNDRRIGQNPDPAKLKFSGVATYD 138
>PSAD_NOSS8 (P56596) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 35.4 bits (80), Expect = 0.037 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR+ V R IG+N SP ++KF+GK ++D Sbjct: 104 KVNEGREKVRFVPRRIGQNPSPAQLKFSGKYTYD 137
>PSAD_FREDI (P23808) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 138 Score = 35.4 bits (80), Expect = 0.037 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVNAGR+ V R IG+N +P +KF+GK ++D Sbjct: 104 KVNAGREKVRFVPRRIGENPNPSAIKFSGKYTYD 137
>PSAD_SYNP6 (P23076) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 141 Score = 35.4 bits (80), Expect = 0.037 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSF 120 KVN GR G+ R IG+N +P +KFTGK + Sbjct: 107 KVNEGRSFAGKVDRRIGQNPNPATIKFTGKQPY 139
>PSAD_SKECO (O96800) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 139 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR V SIGKN +P +KF+G +++ Sbjct: 105 KVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138
>PSAD_ODOSI (P49481) Photosystem I reaction center subunit II (Photosystem I 16| kDa polypeptide) (PSI-D) Length = 139 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +1 Query: 22 KVNAGRQGVGQNFRSIGKNVSPIEVKFTGKNSFD 123 KVN GR V SIGKN +P +KF+G +++ Sbjct: 105 KVNPGRTSVNSRGFSIGKNPNPASIKFSGITTYE 138
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 269 HYHRIHHSNSTILKLQDVHHHRHPP 195 H+H HH + Q HHH HPP Sbjct: 1005 HHHPPHHHHHHAPPPQPHHHHAHPP 1029
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -3 Query: 269 HYHRIHHSNSTILKLQDVHHHRHPP 195 H+H HH + Q HHH HPP Sbjct: 997 HHHPPHHHHHHAPPPQPHHHHAHPP 1021
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Frame = -3 Query: 272 NHYHRIHHSNSTILKL-QDVHHHRHPPIT 189 +H+H HH+N + HHH H P+T Sbjct: 755 HHHHHHHHANHASHAVHHGHHHHHHHPVT 783
>DYRK2_DROME (Q9V3D5) Dual specificity tyrosine-phosphorylation-regulated kinase| 2 (EC 2.7.12.1) (dDyrk2) (Protein smell impaired at 35A) Length = 722 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -3 Query: 272 NHYHRIHHSNSTILKLQDVHHHRH 201 NH++ HH+ ST HHH H Sbjct: 663 NHHNVTHHNASTATIATTTHHHHH 686 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,687,532 Number of Sequences: 219361 Number of extensions: 527387 Number of successful extensions: 1553 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1431 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1544 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
