ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4i01 |
|---|---|
| Clone Library Name | barley_pub |
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 34.7 bits (78), Expect = 0.063 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 207 FLGFTKTAEVWNSRACMMGLIGTFIVELI 293 F GFT +AE WN R M+G + +EL+ Sbjct: 7 FWGFTDSAETWNGRFAMIGFMAVIFIELV 35
>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 526 Score = 32.3 bits (72), Expect = 0.32 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVEL 290 G+TK+AE WN RA M+ ++ ++E+ Sbjct: 484 GWTKSAETWNGRAAMLAVLALLVLEV 509
>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 512 Score = 32.3 bits (72), Expect = 0.32 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVEL 290 G+TK+AE WN RA M+ ++ ++E+ Sbjct: 471 GWTKSAETWNGRAAMLAVLALLVLEV 496
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 31.6 bits (70), Expect = 0.54 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVELI 293 G T +AEVWN R M+G I I+EL+ Sbjct: 350 GMTSSAEVWNGRIAMLGFI-ALIIELV 375
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 31.2 bits (69), Expect = 0.70 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Frame = +3 Query: 45 SMVHAPSLLAVQTFRGQRNAATNRSPRAAA-FRVRAAKLPAGVQVPRAQPKLSEPFLG-- 215 +MV + LAV+ RG + S A F A L VP Q + +E G Sbjct: 74 AMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAI 133 Query: 216 FTKTAEVWNSRACMMGLIGTFIVELI 293 AE+WN R M+GL+ E+I Sbjct: 134 MNANAELWNGRFAMIGLVALAATEII 159
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 31.2 bits (69), Expect = 0.70 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 3/86 (3%) Frame = +3 Query: 45 SMVHAPSLLAVQTFRGQRNAATNRSPRAAA-FRVRAAKLPAGVQVPRAQPKLSEPFLG-- 215 +MV + LAV+ RG + S A F A L VP Q + +E G Sbjct: 79 AMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAI 138 Query: 216 FTKTAEVWNSRACMMGLIGTFIVELI 293 AE+WN R M+GL+ E+I Sbjct: 139 MNANAELWNGRFAMLGLVALAATEII 164
>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 30.8 bits (68), Expect = 0.92 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVELI 293 G T AEVWN R M+G I +VELI Sbjct: 350 GLTTAAEVWNGRLAMLGFI-ALLVELI 375
>CPT1C_MOUSE (Q8BGD5) Carnitine O-palmitoyltransferase I, brain isoform (EC| 2.3.1.21) (Carnitine palmitoyltransferase 1C) (CPT IC) Length = 798 Score = 30.0 bits (66), Expect = 1.6 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 12/63 (19%) Frame = -2 Query: 178 GTWTPAGSLAARTLK------------AAALGERLVAAFLCPRKVWTARRDGA*TMEATA 35 GT +P G L+ R L+ A L E L A PR +W R+ T ATA Sbjct: 344 GTHSPNGLLSPRALEQQFQDILDDPSPACPLEEHLAALTAAPRSMWAQVRESVKTHAATA 403 Query: 34 IGA 26 + A Sbjct: 404 LEA 406
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVE 287 GFT AE WN R M+G I + E Sbjct: 11 GFTSGAENWNGRLAMLGFIAALLTE 35
>SMOK_RHOSH (P54933) ATP-binding transport protein smoK (Protein polK)| Length = 332 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -1 Query: 245 GVPDLGRLGEPEER---LTQLGLRPRHLDSGRELGCPDSESGRS 123 G P + + PE T +G+RP H+D RE G + E G S Sbjct: 235 GSPKMNLIEGPEAAKHGATTIGIRPEHIDLSREAGAWEGEVGVS 278
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 29.6 bits (65), Expect = 2.0 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Frame = +3 Query: 99 NAATNR--SPRAAAFRVRAAKLPAGVQVPRAQPKLSEPF------LGFTKTAEVWNSRAC 254 NA++++ S A F+ +A P V P+ + K+ + +GFTK E++ R Sbjct: 48 NASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVA 107 Query: 255 MMGLIGTFIVELI 293 M+G + + E I Sbjct: 108 MIGFAASLLGEAI 120
>TSSC4_HUMAN (Q9Y5U2) Protein TSSC4 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 4 protein) (Tumor-suppressing STF cDNA 4 protein) Length = 329 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -1 Query: 278 EGPDE-SHHAGPGVPDLGRLGEPEERLTQLGLRPRHLDSGRELGCPDSES 132 EGP E +H AGPG P+ G P L ++ + SG G P E+ Sbjct: 252 EGPVELAHLAGPGSPEAEEWGSPHGGLQEVEALSGSVHSGSVPGLPPVET 301
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Frame = +3 Query: 117 SPRAAAFRVRAAKLPAGVQVPRAQPKLSEPF------LGFTKTAEVWNSRACMMGLIGTF 278 S A F+ +A K PA VP+ + K+ + +GFTK E++ R M+G + Sbjct: 55 STTVALFKSKA-KAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113 Query: 279 IVELI 293 + E I Sbjct: 114 LGEAI 118
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = +3 Query: 117 SPRAAAFRVRAAKLPAGVQVPRAQPKLSEPF------LGFTKTAEVWNSRACMMGLIGTF 278 S A F+ +A P V P+ + K+ + +GFTK E++ R M+G + Sbjct: 56 STTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 115 Query: 279 IVELI 293 + E I Sbjct: 116 LGEAI 120
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVELI 293 G T AEVWN R M+G + +VEL+ Sbjct: 350 GITLNAEVWNGRIAMLGFL-ALLVELL 375
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 213 GFTKTAEVWNSRACMMGLIGTFIVELI 293 G+ ++EVWN R M+G F++ELI Sbjct: 354 GWNNSSEVWNGRLAMLG-FSAFLLELI 379
>TNIK_HUMAN (Q9UKE5) TRAF2 and NCK-interacting kinase (EC 2.7.11.1)| Length = 1360 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = +2 Query: 50 GSCTISPSSPDLPRTEECCH*PLTESGRFQSPGSQAPCRSP 172 GS I S+PDL RTE PL + S S P P Sbjct: 700 GSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQP 740
>GUAA_RHORT (Q2RXI5) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = -1 Query: 266 ESHHAGPGVPDLGRLG--EPEERLTQLGLRPRHLDSGRELGCPDSESGR 126 +SHH G+P+ ++ EP L + +R D GRELG PD GR Sbjct: 355 KSHHNVGGLPERMKMALVEPLRELFKDEVR----DLGRELGLPDEMVGR 399
>SYL_MYCPA (Q744V3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.1 bits (61), Expect = 5.9 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -2 Query: 190 GCARGTWTPAGSLAARTLKAAALGERLVAAFLC---PRKV 80 G RG T A TL+AAAL + V AFL PRKV Sbjct: 918 GKVRGRVTVAADADRDTLEAAALADEKVLAFLAGAQPRKV 957
>GLGA_PROMT (Q46LU1) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 487 Score = 27.7 bits (60), Expect = 7.8 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +1 Query: 10 PWLISVHQWLWPPWFMH--HLS*QSRPSADR-GMLPLTAHRERPLSESGQ 150 PW + Q W PW+MH H + ADR + T RE SE G+ Sbjct: 159 PWRWKLDQITWCPWYMHGDHTMASAMLYADRVNAVSPTYSREIRTSEYGE 208
>ACSA1_ACEXY (P21877) Cellulose synthase 1 [Includes: Cellulose synthase catalytic| domain [UDP-forming] (EC 2.4.1.12); Cyclic di-GMP-binding domain (Cellulose synthase 1 regulatory domain)] Length = 1550 Score = 27.7 bits (60), Expect = 7.8 Identities = 7/10 (70%), Positives = 9/10 (90%) Frame = +1 Query: 34 WLWPPWFMHH 63 WLWP W+MH+ Sbjct: 1499 WLWPDWYMHN 1508
>DPO3A_YERPE (O68770) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1174 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = +3 Query: 132 AFRVRAAKLPAGVQVPRAQPKL--SEPFLGFTKTAEVWNS 245 A R L AGV++P A ++ S+P L TK E+W++ Sbjct: 768 ALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDA 807 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,874,062 Number of Sequences: 219361 Number of extensions: 909483 Number of successful extensions: 2782 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2781 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
