ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4h24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genom... 137 5e-29
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 5e-29
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 5e-29
4ref|NM_185152.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
5gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom... 60 9e-06
6gb|AC133456.11| Mus musculus chromosome 5, clone RP24-465G18, co... 44 0.52
7ref|NM_009491.1| Mus musculus vomeronasal 2, receptor, 16 (V2r16... 44 0.52
8gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, com... 44 0.52
9gb|AF011426.1|AF011426 Mus musculus putative pheromone receptor ... 44 0.52
10ref|XM_472636.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
11gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome... 42 2.1
12emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4,... 42 2.1
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, comple... 42 2.1
15dbj|AK072545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
16gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 42 2.1
17emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chr... 42 2.1
18emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chr... 42 2.1
19gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome... 40 8.2
20ref|XM_611873.2| PREDICTED: Bos taurus similar to putative acyl-... 40 8.2
21gb|AC183639.2| Pan troglodytes chromosome X clone PTB-24B10 map ... 40 8.2
22gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome... 40 8.2
23gb|AC098878.3| Mus musculus BAC clone RP23-2G23 from 4, complete... 40 8.2
24gb|AC074085.7| Homo sapiens BAC clone RP11-3L10 from 7, complete... 40 8.2
25gb|CP000107.1| Ehrlichia canis str. Jake, complete genome 40 8.2
26emb|AL591394.11| Human DNA sequence from clone RP11-1145B22 on c... 40 8.2
27emb|AL844848.12| Mouse DNA sequence from clone RP23-247N5 on chr... 40 8.2
28gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, co... 40 8.2
29gb|AY046321.1| Cricetulus longicaudatus cyclin E mRNA, complete cds 40 8.2
30gb|AC157276.2| Mus musculus BAC clone RP23-426N20 from chromosom... 40 8.2
31gb|AC009949.9| Homo sapiens BAC clone RP11-69J7 from 2, complete... 40 8.2
32dbj|AB158522.1| Alstroemeria mosaic virus NIb/CP gene for nuclea... 40 8.2
33gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete... 40 8.2
34gb|AC144921.12| Mus musculus chromosome 1, clone RP24-214P19, co... 40 8.2
35gb|DQ295032.1| Alstroemeria mosaic virus isolate TW polyprotein ... 40 8.2
36emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chro... 40 8.2 
>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete
              sequence
          Length = 132981

 Score =  137 bits (69), Expect = 5e-29
 Identities = 111/125 (88%)
 Strand = Plus / Plus

                                                                          
Query: 478    gtatcctttgactcacaagatcttggtgctgcgctgaagggcttcatcgcgacgatatca 537
              |||||||||||| ||||||| ||||| |||||  |||| |||||||| || |||||||| 
Sbjct: 118027 gtatcctttgacacacaagaccttggagctgcattgaaaggcttcattgcaacgatatct 118086

                                                                          
Query: 538    aagcccaagccatatagaggatggaggacgctgtcatatgttataggatggatattctac 597
              ||||||||| | |||||||||||||||||  |||| ||||||||||||||||||||||||
Sbjct: 118087 aagcccaaggcgtatagaggatggaggacattgtcttatgttataggatggatattctac 118146

                   
Query: 598    accaa 602
              |||||
Sbjct: 118147 accaa 118151



 Score =  111 bits (56), Expect = 3e-21
 Identities = 314/400 (78%)
 Strand = Plus / Plus

                                                                          
Query: 44     aggccgaagcacatgctgctgtgaaacaagcatatgaagactggaagaatgtctcgacct 103
              |||| |||||| |||| |||||||| ||||| |||||| | |||||||||||||  ||||
Sbjct: 117602 aggctgaagcatatgcagctgtgaagcaagcgtatgaaaattggaagaatgtcttcacct 117661

                                                                          
Query: 104    gtgacagtgacacgcttgtggagaatccatcacagctcttcaatatgagatccccatctt 163
              |||||| ||| || ||| |||  ||||| ||||||||| |  || ||||| |  | || |
Sbjct: 117662 gtgacaatgaaacacttctggcaaatccttcacagctccttgatgtgagaactacgtcat 117721

                                                                          
Query: 164    tgcatgagaacggattttaccagttgcctacacaagtttcaactgacgattttgatataa 223
              ||||||| || |  | | ||||||| |||||||||||||| || || | ||||| | | |
Sbjct: 117722 tgcatgaaaatgactatgaccagtttcctacacaagtttctaccgatggttttggtttga 117781

                                                                          
Query: 224    gccacttggacataccatcagatgacattttctctgttgaaccatcatgtgccttggatc 283
              |||| |    ||||||||||  ||||||||||||  |||| || ||  |||| |||||||
Sbjct: 117782 gccagtcaagcataccatcacctgacattttctcaattgatccctcgagtgcattggatc 117841

                                                                          
Query: 284    cttgtgccgtgggagctgcagaaagcagtgaaaatagatttcagtccgagcttcccccac 343
              ||||| |  ||| | ||||||||| || |||||||  || |||||| ||| | |||||||
Sbjct: 117842 cttgtccattggaaactgcagaaaacaatgaaaatcaatatcagtcagagttacccccac 117901

                                                                          
Query: 344    ttggtggccatggacagcctcgagaatcacacgcgttagacaggttctcaaattcattgg 403
              |||||||||||| ||  || | || ||||||  |  | |||| |||||||||||| ||||
Sbjct: 117902 ttggtggccatgcaccaccgcaagtatcacagacagtggacaagttctcaaattctttgg 117961

                                                      
Query: 404    ttttcgaggagagcaccagtcatgcctcattcaatgaaga 443
              |||  |||||  ||||||||||  ||||||||| ||||||
Sbjct: 117962 tttatgaggattgcaccagtcacccctcattcagtgaaga 118001
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 5e-29
 Identities = 111/125 (88%)
 Strand = Plus / Plus

                                                                            
Query: 478      gtatcctttgactcacaagatcttggtgctgcgctgaagggcttcatcgcgacgatatca 537
                |||||||||||| ||||||| ||||| |||||  |||| |||||||| || |||||||| 
Sbjct: 18213042 gtatcctttgacacacaagaccttggagctgcattgaaaggcttcattgcaacgatatct 18213101

                                                                            
Query: 538      aagcccaagccatatagaggatggaggacgctgtcatatgttataggatggatattctac 597
                ||||||||| | |||||||||||||||||  |||| ||||||||||||||||||||||||
Sbjct: 18213102 aagcccaaggcgtatagaggatggaggacattgtcttatgttataggatggatattctac 18213161

                     
Query: 598      accaa 602
                |||||
Sbjct: 18213162 accaa 18213166



 Score =  111 bits (56), Expect = 3e-21
 Identities = 314/400 (78%)
 Strand = Plus / Plus

                                                                            
Query: 44       aggccgaagcacatgctgctgtgaaacaagcatatgaagactggaagaatgtctcgacct 103
                |||| |||||| |||| |||||||| ||||| |||||| | |||||||||||||  ||||
Sbjct: 18212617 aggctgaagcatatgcagctgtgaagcaagcgtatgaaaattggaagaatgtcttcacct 18212676

                                                                            
Query: 104      gtgacagtgacacgcttgtggagaatccatcacagctcttcaatatgagatccccatctt 163
                |||||| ||| || ||| |||  ||||| ||||||||| |  || ||||| |  | || |
Sbjct: 18212677 gtgacaatgaaacacttctggcaaatccttcacagctccttgatgtgagaactacgtcat 18212736

                                                                            
Query: 164      tgcatgagaacggattttaccagttgcctacacaagtttcaactgacgattttgatataa 223
                ||||||| || |  | | ||||||| |||||||||||||| || || | ||||| | | |
Sbjct: 18212737 tgcatgaaaatgactatgaccagtttcctacacaagtttctaccgatggttttggtttga 18212796

                                                                            
Query: 224      gccacttggacataccatcagatgacattttctctgttgaaccatcatgtgccttggatc 283
                |||| |    ||||||||||  ||||||||||||  |||| || ||  |||| |||||||
Sbjct: 18212797 gccagtcaagcataccatcacctgacattttctcaattgatccctcgagtgcattggatc 18212856

                                                                            
Query: 284      cttgtgccgtgggagctgcagaaagcagtgaaaatagatttcagtccgagcttcccccac 343
                ||||| |  ||| | ||||||||| || |||||||  || |||||| ||| | |||||||
Sbjct: 18212857 cttgtccattggaaactgcagaaaacaatgaaaatcaatatcagtcagagttacccccac 18212916

                                                                            
Query: 344      ttggtggccatggacagcctcgagaatcacacgcgttagacaggttctcaaattcattgg 403
                |||||||||||| ||  || | || ||||||  |  | |||| |||||||||||| ||||
Sbjct: 18212917 ttggtggccatgcaccaccgcaagtatcacagacagtggacaagttctcaaattctttgg 18212976

                                                        
Query: 404      ttttcgaggagagcaccagtcatgcctcattcaatgaaga 443
                |||  |||||  ||||||||||  ||||||||| ||||||
Sbjct: 18212977 tttatgaggattgcaccagtcacccctcattcagtgaaga 18213016



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 293      tgggagctgcagaaagcagtgaaaatagatttcagtccgagcttcccccacttggtggcc 352
                ||||| |||||||||||| |||||||  || |||| ||||  | ||||||||||||||||
Sbjct: 34299634 tgggaactgcagaaagcaatgaaaatcaatatcagcccgatttacccccacttggtggcc 34299575

                      
Query: 353      atggac 358
                ||||||
Sbjct: 34299574 atggac 34299569



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 44       aggccgaagcacatgctgctgtgaaacaagcatatgaagactggaagaatgt 95
                |||| ||||||||||| |||||||| ||||| |||||| | |||||||||||
Sbjct: 34299862 aggctgaagcacatgcagctgtgaagcaagcgtatgaaaattggaagaatgt 34299811



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 552      tagaggatggaggacgctgtcatatgttataggatggatattctacaccaa 602
                ||||| |||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 34299383 tagagaatggaggacattgtcttatgttctagggtggatattctacaccaa 34299333
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 5e-29
 Identities = 111/125 (88%)
 Strand = Plus / Plus

                                                                            
Query: 478      gtatcctttgactcacaagatcttggtgctgcgctgaagggcttcatcgcgacgatatca 537
                |||||||||||| ||||||| ||||| |||||  |||| |||||||| || |||||||| 
Sbjct: 18206583 gtatcctttgacacacaagaccttggagctgcattgaaaggcttcattgcaacgatatct 18206642

                                                                            
Query: 538      aagcccaagccatatagaggatggaggacgctgtcatatgttataggatggatattctac 597
                ||||||||| | |||||||||||||||||  |||| ||||||||||||||||||||||||
Sbjct: 18206643 aagcccaaggcgtatagaggatggaggacattgtcttatgttataggatggatattctac 18206702

                     
Query: 598      accaa 602
                |||||
Sbjct: 18206703 accaa 18206707



 Score =  111 bits (56), Expect = 3e-21
 Identities = 314/400 (78%)
 Strand = Plus / Plus

                                                                            
Query: 44       aggccgaagcacatgctgctgtgaaacaagcatatgaagactggaagaatgtctcgacct 103
                |||| |||||| |||| |||||||| ||||| |||||| | |||||||||||||  ||||
Sbjct: 18206158 aggctgaagcatatgcagctgtgaagcaagcgtatgaaaattggaagaatgtcttcacct 18206217

                                                                            
Query: 104      gtgacagtgacacgcttgtggagaatccatcacagctcttcaatatgagatccccatctt 163
                |||||| ||| || ||| |||  ||||| ||||||||| |  || ||||| |  | || |
Sbjct: 18206218 gtgacaatgaaacacttctggcaaatccttcacagctccttgatgtgagaactacgtcat 18206277

                                                                            
Query: 164      tgcatgagaacggattttaccagttgcctacacaagtttcaactgacgattttgatataa 223
                ||||||| || |  | | ||||||| |||||||||||||| || || | ||||| | | |
Sbjct: 18206278 tgcatgaaaatgactatgaccagtttcctacacaagtttctaccgatggttttggtttga 18206337

                                                                            
Query: 224      gccacttggacataccatcagatgacattttctctgttgaaccatcatgtgccttggatc 283
                |||| |    ||||||||||  ||||||||||||  |||| || ||  |||| |||||||
Sbjct: 18206338 gccagtcaagcataccatcacctgacattttctcaattgatccctcgagtgcattggatc 18206397

                                                                            
Query: 284      cttgtgccgtgggagctgcagaaagcagtgaaaatagatttcagtccgagcttcccccac 343
                ||||| |  ||| | ||||||||| || |||||||  || |||||| ||| | |||||||
Sbjct: 18206398 cttgtccattggaaactgcagaaaacaatgaaaatcaatatcagtcagagttacccccac 18206457

                                                                            
Query: 344      ttggtggccatggacagcctcgagaatcacacgcgttagacaggttctcaaattcattgg 403
                |||||||||||| ||  || | || ||||||  |  | |||| |||||||||||| ||||
Sbjct: 18206458 ttggtggccatgcaccaccgcaagtatcacagacagtggacaagttctcaaattctttgg 18206517

                                                        
Query: 404      ttttcgaggagagcaccagtcatgcctcattcaatgaaga 443
                |||  |||||  ||||||||||  ||||||||| ||||||
Sbjct: 18206518 tttatgaggattgcaccagtcacccctcattcagtgaaga 18206557



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 293      tgggagctgcagaaagcagtgaaaatagatttcagtccgagcttcccccacttggtggcc 352
                ||||| |||||||||||| |||||||  || |||| ||||  | ||||||||||||||||
Sbjct: 34390106 tgggaactgcagaaagcaatgaaaatcaatatcagcccgatttacccccacttggtggcc 34390047

                      
Query: 353      atggac 358
                ||||||
Sbjct: 34390046 atggac 34390041



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 44       aggccgaagcacatgctgctgtgaaacaagcatatgaagactggaagaatgt 95
                |||| ||||||||||| |||||||| ||||| |||||| | |||||||||||
Sbjct: 34390334 aggctgaagcacatgcagctgtgaagcaagcgtatgaaaattggaagaatgt 34390283



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 552      tagaggatggaggacgctgtcatatgttataggatggatattctacaccaa 602
                ||||| |||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 34389855 tagagaatggaggacattgtcttatgttctagggtggatattctacaccaa 34389805
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>ref|NM_185152.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 579

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 13  gtttctgctgatgatctaacagaaattgagaaggccgaagcacatgctgctgtgaaacaa 72
           |||| |||||||||||| |  ||||  || ||||| ||||||||||| |||||||| |||
Sbjct: 409 gtttgtgctgatgatcttatggaaaaggataaggctgaagcacatgcagctgtgaagcaa 468

                                  
Query: 73  gcatatgaagactggaagaatgt 95
           || |||||| | |||||||||||
Sbjct: 469 gcgtatgaaaattggaagaatgt 491
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>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
             sequence
          Length = 143205

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 293   tgggagctgcagaaagcagtgaaaatagatttcagtccgagcttcccccacttggtggcc 352
             ||||| |||||||||||| |||||||  || |||| ||||  | ||||||||||||||||
Sbjct: 35364 tgggaactgcagaaagcaatgaaaatcaatatcagcccgatttacccccacttggtggcc 35423

                   
Query: 353   atggac 358
             ||||||
Sbjct: 35424 atggac 35429



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 44    aggccgaagcacatgctgctgtgaaacaagcatatgaagactggaagaatgt 95
             |||| ||||||||||| |||||||| ||||| |||||| | |||||||||||
Sbjct: 35136 aggctgaagcacatgcagctgtgaagcaagcgtatgaaaattggaagaatgt 35187



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 552   tagaggatggaggacgctgtcatatgttataggatggatattctacaccaa 602
             ||||| |||||||||  |||| |||||| |||| |||||||||||||||||
Sbjct: 35615 tagagaatggaggacattgtcttatgttctagggtggatattctacaccaa 35665
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>gb|AC133456.11| Mus musculus chromosome 5, clone RP24-465G18, complete sequence
          Length = 162210

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 480   atcctttgactcacaagatctt 501
             ||||||||||||||||||||||
Sbjct: 31781 atcctttgactcacaagatctt 31760
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>ref|NM_009491.1| Mus musculus vomeronasal 2, receptor, 16 (V2r16), mRNA
          Length = 3896

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 480  atcctttgactcacaagatctt 501
            ||||||||||||||||||||||
Sbjct: 3394 atcctttgactcacaagatctt 3415
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>gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, complete sequence
          Length = 227074

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 250   attttctctgttgaaccatcat 271
             ||||||||||||||||||||||
Sbjct: 69902 attttctctgttgaaccatcat 69923
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>gb|AF011426.1|AF011426 Mus musculus putative pheromone receptor (VR16) mRNA, complete cds
          Length = 3896

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 480  atcctttgactcacaagatctt 501
            ||||||||||||||||||||||
Sbjct: 3394 atcctttgactcacaagatctt 3415
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>ref|XM_472636.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 64   gtgaaacaagcatatgaagactgga 88
            ||||||||||||||||| |||||||
Sbjct: 1147 gtgaaacaagcatatgatgactgga 1171
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>gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome 14, complete sequence
          Length = 165934

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     agggtttctgctgatgatcta 30
              |||||||||||||||||||||
Sbjct: 132378 agggtttctgctgatgatcta 132398
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>emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03,
             complete sequence
          Length = 46422

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 64    gtgaaacaagcatatgaagactgga 88
             ||||||||||||||||| |||||||
Sbjct: 27791 gtgaaacaagcatatgatgactgga 27815
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 64       gtgaaacaagcatatgaagactgga 88
                ||||||||||||||||| |||||||
Sbjct: 22129310 gtgaaacaagcatatgatgactgga 22129334
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>gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, complete sequence
          Length = 185947

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   agtttcaactgacgattttga 218
             |||||||||||||||||||||
Sbjct: 32547 agtttcaactgacgattttga 32527
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>dbj|AK072545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131N23, full
            insert sequence
          Length = 2535

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 64   gtgaaacaagcatatgaagactgga 88
            ||||||||||||||||| |||||||
Sbjct: 1335 gtgaaacaagcatatgatgactgga 1359
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>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
             chromosome 4, complete sequence
          Length = 90825

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 64    gtgaaacaagcatatgaagactgga 88
             ||||||||||||||||| |||||||
Sbjct: 53816 gtgaaacaagcatatgatgactgga 53840
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>emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chromosome 14, complete
              sequence
          Length = 217257

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     agggtttctgctgatgatcta 30
              |||||||||||||||||||||
Sbjct: 198401 agggtttctgctgatgatcta 198381
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>emb|AL929546.8| Mouse DNA sequence from clone RP23-402K10 on chromosome 2, complete
             sequence
          Length = 130361

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 240   atcagatgacattttctctgttgaa 264
             ||||||||||| |||||||||||||
Sbjct: 91143 atcagatgacagtttctctgttgaa 91167
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>gb|AC165078.2| Mus musculus BAC clone RP24-287O1 from chromosome 12, complete sequence
          Length = 172492

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   tgcagaaagcagtgaaaata 319
             ||||||||||||||||||||
Sbjct: 18119 tgcagaaagcagtgaaaata 18138
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>ref|XM_611873.2| PREDICTED: Bos taurus similar to putative acyl-CoA dehydrogenase
            (LOC532717), mRNA
          Length = 1243

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  cagtcatgcctcattcaatg 439
            ||||||||||||||||||||
Sbjct: 1243 cagtcatgcctcattcaatg 1224
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>gb|AC183639.2| Pan troglodytes chromosome X clone PTB-24B10 map human ortholog p11.23,
             complete sequence
          Length = 183185

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   aaagcagtgaaaatagattt 324
             ||||||||||||||||||||
Sbjct: 99317 aaagcagtgaaaatagattt 99336
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>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence
          Length = 203891

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   agaatccatcacagctcttc 144
             ||||||||||||||||||||
Sbjct: 48515 agaatccatcacagctcttc 48534
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>gb|AC098878.3| Mus musculus BAC clone RP23-2G23 from 4, complete sequence
          Length = 209021

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ctaacagaaattgagaaggc 47
              ||||||||||||||||||||
Sbjct: 182470 ctaacagaaattgagaaggc 182489
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>gb|AC074085.7| Homo sapiens BAC clone RP11-3L10 from 7, complete sequence
          Length = 155260

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gaaattgagaaggccgaagc 53
             ||||||||||||||||||||
Sbjct: 83984 gaaattgagaaggccgaagc 83965
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>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    ataccatcagatgacatttt 254
              ||||||||||||||||||||
Sbjct: 380746 ataccatcagatgacatttt 380727
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>emb|AL591394.11| Human DNA sequence from clone RP11-1145B22 on chromosome Xp11.21-11.23
             Contains part of the gene for a novel zinc finger protein,
             complete sequence
          Length = 46442

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   aaagcagtgaaaatagattt 324
             ||||||||||||||||||||
Sbjct: 30963 aaagcagtgaaaatagattt 30982
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>emb|AL844848.12| Mouse DNA sequence from clone RP23-247N5 on chromosome 4 Contains part of
              the Ptprd gene for receptor type protein tyrosine
              phosphatase D and a CpG island, complete sequence
          Length = 199012

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ctaacagaaattgagaaggc 47
              ||||||||||||||||||||
Sbjct: 139827 ctaacagaaattgagaaggc 139846
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>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence
          Length = 199527

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 240    atcagatgacattttctctgttga 263
              |||||||| |||||||||||||||
Sbjct: 123618 atcagatggcattttctctgttga 123641
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>gb|AY046321.1| Cricetulus longicaudatus cyclin E mRNA, complete cds
          Length = 1472

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 ttgatataagccacttggacatac 238
           |||| |||||||||||||||||||
Sbjct: 784 ttgacataagccacttggacatac 761
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>gb|AC157276.2| Mus musculus BAC clone RP23-426N20 from chromosome 12, complete
             sequence
          Length = 220385

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   tgcagaaagcagtgaaaata 319
             ||||||||||||||||||||
Sbjct: 20123 tgcagaaagcagtgaaaata 20104
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>gb|AC009949.9| Homo sapiens BAC clone RP11-69J7 from 2, complete sequence
          Length = 174699

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    gggagctgcagaaagcagtg 313
              ||||||||||||||||||||
Sbjct: 130947 gggagctgcagaaagcagtg 130966



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   gggagctgcagaaagcagtg 313
             ||||||||||||||||||||
Sbjct: 31608 gggagctgcagaaagcagtg 31627
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>dbj|AB158522.1| Alstroemeria mosaic virus NIb/CP gene for nuclear inclusion protein
           b/coat protein, partial cds
          Length = 1867

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  gctgtgaaacaagcatatga 80
           ||||||||||||||||||||
Sbjct: 937 gctgtgaaacaagcatatga 956
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>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence
          Length = 179691

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 306    aagcagtgaaaatagatttcagtc 329
              ||||||||||||||||||| ||||
Sbjct: 147846 aagcagtgaaaatagattttagtc 147823
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>gb|AC144921.12| Mus musculus chromosome 1, clone RP24-214P19, complete sequence
          Length = 188960

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gcatatgaagactggaagaa 92
             ||||||||||||||||||||
Sbjct: 79274 gcatatgaagactggaagaa 79255
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>gb|DQ295032.1| Alstroemeria mosaic virus isolate TW polyprotein gene, partial cds
          Length = 1855

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  gctgtgaaacaagcatatga 80
           ||||||||||||||||||||
Sbjct: 925 gctgtgaaacaagcatatga 944
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>emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chromosome X, complete
              sequence
          Length = 227581

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    atccatcacagctcttcaat 147
              ||||||||||||||||||||
Sbjct: 202784 atccatcacagctcttcaat 202765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,076,360
Number of Sequences: 3902068
Number of extensions: 5076360
Number of successful extensions: 102711
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102479
Number of HSP's gapped (non-prelim): 232
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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