ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4h21 |
|---|---|
| Clone Library Name | barley_pub |
>UB72_DEIRA (Q9RV58) Protein DR1172| Length = 298 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +3 Query: 3 GVAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGI 170 G +AA V +A K A + DKA+D+A+ K+ ++A AKD Q + Sbjct: 162 GAQQAAANVKDKVQDVKADASKAADQAKDKAQDVAQNVKQGAQQAASDAKDKVQDV 217 Score = 33.1 bits (74), Expect = 0.18 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = +3 Query: 6 VAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 VA+ A+ N + V+ + A ++ D+AKD A+ K +A D AKD AQ + V Sbjct: 104 VADTAKDAGQNVGQNVK---REAADLADQAKDKAQDVKADVSKAADQAKDKAQDVAQNV 159 Score = 32.3 bits (72), Expect = 0.30 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +3 Query: 9 AEAAEAVSGNTDKAVEEAG---KGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDK 179 A+A++A DKA + A +GA + AKD + K A D AKD AQ + Sbjct: 179 ADASKAADQAKDKAQDVAQNVKQGAQQAASDAKDKVQDVKADASRAADQAKDKAQDVAQN 238 Query: 180 V 182 V Sbjct: 239 V 239 Score = 30.8 bits (68), Expect = 0.88 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Frame = +3 Query: 3 GVAEAAEAVSGNTDKAVEE----AGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGI 170 G+ +AA+ V + K E+ A + + DKA+D+A + K A A KDA + + Sbjct: 45 GLKDAAQDVGSSVTKGWEKTKDAAQNAGSVIADKAQDVAGEVKSAVAGATAEIKDAGKEV 104 Query: 171 TD 176 D Sbjct: 105 AD 106 Score = 28.1 bits (61), Expect = 5.7 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 23/76 (30%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATE------------VDDKAKDLAEQAK-----------K 122 E AV+G T + +++AGK + V +A DLA+QAK K Sbjct: 85 EVKSAVAGATAE-IKDAGKEVADTAKDAGQNVGQNVKREAADLADQAKDKAQDVKADVSK 143 Query: 123 ATEEAWDGAKDAAQGI 170 A ++A D A+D AQ + Sbjct: 144 AADQAKDKAQDVAQNV 159
>LEA29_GOSHI (P13940) Late embryogenesis abundant protein D-29 (LEA D-29)| Length = 302 Score = 34.7 bits (78), Expect = 0.061 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = +3 Query: 6 VAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKD 155 VAE AE + T K EE G+ +KAK + AK EE + AKD Sbjct: 238 VAEKAEGAAEETKKKNEERGESLKWAKEKAKQGYDAAKSKAEETIESAKD 287
>TOLA_ECOLI (P19934) Protein tolA| Length = 421 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/57 (40%), Positives = 27/57 (47%) Frame = +3 Query: 9 AEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDK 179 AEAAEA A E K ATE +KAK AE+ A + A D A + DK Sbjct: 197 AEAAEAA------AAEARKKAATEAAEKAKAEAEKKAAAEKAAADKKAAAEKAAADK 247
>EFTS_MYCLE (O33039) Elongation factor Ts (EF-Ts)| Length = 276 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +3 Query: 33 GNTDKAVEEAG-KGATEVDDKAKDLAEQAKKATEEAWDGAKDAA 161 GN DKAVE KGA KD+ ++A++AT E AKD A Sbjct: 32 GNFDKAVESLRIKGA-------KDVGKRAERATAEGLVAAKDGA 68
>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac| Length = 1120 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = +3 Query: 9 AEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDK 179 A AA +G + AGK A A +A +ATE+A A+ A+ T + Sbjct: 306 ASAASTSAGQASASATAAGKSAESAASSASTATTKAGEATEQASAAARSASAAKTSE 362
>ATPF_VIBAL (P12989) ATP synthase B chain (EC 3.6.3.14)| Length = 156 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 +AAE + + D A A E A ++ EQA K + D A++ AQ K+ Sbjct: 45 QAAERAAKDLDLAQANASDQLKEAKRTATEIIEQANKRKSQILDEAREEAQAERQKI 101
>FTSY_NEIMC (O30391) Cell division protein ftsY homolog| Length = 421 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 6 VAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 V A E VSG ++ E + +E ++ A+ AEQ + A E + +A + + V Sbjct: 54 VESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAV 112
>FTSY_NEIMB (P57011) Cell division protein ftsY homolog| Length = 421 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 6 VAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 V A E VSG ++ E + +E ++ A+ AEQ + A E + +A + + V Sbjct: 54 VESAVETVSGAVEQVKETVAEMLSEAEEAAEKAAEQVEAAKEAVAETVGEAVGQVQEAV 112
>PROA_GEOMG (Q39QR2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 418 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/34 (50%), Positives = 18/34 (52%) Frame = +3 Query: 39 TDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAW 140 TD VE G DD + A QAKKATEE W Sbjct: 283 TDLKVELRG------DDCVRQFAPQAKKATEEDW 310
>SIPB_SALTY (Q56019) Cell invasion protein sipB (Effector protein sipB)| Length = 593 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQ 164 + A+ + AVE+AGK ATE AK+ ++A AT +A AK A+ Sbjct: 175 DPADPGYAQAEAAVEQAGKEATE----AKEALDKATDATVKAGTDAKAKAE 221
>SIPB_SALTI (Q56134) Cell invasion protein sipB (Effector protein sipB)| Length = 593 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQ 164 + A+ + AVE+AGK ATE AK+ ++A AT +A AK A+ Sbjct: 175 DPADPGYAQAEAAVEQAGKEATE----AKEALDKATDATVKAGTDAKAKAE 221
>SIPB_SALDU (Q79BT1) Cell invasion protein sipB (Effector protein sipB)| Length = 593 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQ 164 + A+ + AVE+AGK ATE AK+ ++A AT +A AK A+ Sbjct: 175 DPADPGYAQAEAAVEQAGKEATE----AKEALDKATDATVKAGTDAKAKAE 221
>ATPF_VIBPA (Q87KA4) ATP synthase B chain (EC 3.6.3.14)| Length = 156 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 +AAE + + D A A E A ++ EQA K + D A++ AQ K+ Sbjct: 45 QAAERAAKDLDLAQANASDQLKEAKRTATEIIEQANKRKSQIIDEAREEAQAERQKI 101
>ATPF_VIBCH (Q9KNH1) ATP synthase B chain (EC 3.6.3.14)| Length = 156 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 +AAE + D A A E A +L EQA K + D A++ AQ K+ Sbjct: 45 QAAERAKKDLDLAQANASDQLKEAKRTATELIEQANKRKAQIIDEAREEAQAERQKI 101
>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light| polypeptide) (NF-L) Length = 543 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +3 Query: 18 AEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQG 167 AEA ++A EE G+G E +++ ++ E+AK+ E G + +G Sbjct: 459 AEAPEEEEEEAAEEEGEGGEEAEEEGEE-GEEAKEEEAEEEGGQEKEEEG 507
>FTSY_NEIMA (P57010) Cell division protein ftsY homolog| Length = 421 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +3 Query: 6 VAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 V A E VSG ++ E + +E ++ A+ AEQ + A E + +A + + V Sbjct: 54 VESAVETVSGAVEQVKEAVAEMLSEAEEAAEKAAEQVEAAKEAIAETVGEAVGQVQEAV 112
>DNAK_SHEON (Q8EHT7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 639 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +3 Query: 24 AVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 AV GN +A+E+A + E K ++A+ + A +GA + D V Sbjct: 574 AVKGNDKEAIEKATQALIEASAKLMEIAQAKAQTQGGAQEGAAKQSNATADDV 626
>FAU_DROME (Q9VGX3) Protein anoxia up-regulated| Length = 619 Score = 28.5 bits (62), Expect = 4.3 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +3 Query: 9 AEAAEAVSGNTDKAVEEAGKGATE----VDDKAKDLAEQAK----------KATEEAWDG 146 AEA + + KA EEA K A E + A+ AE+AK KA EEA Sbjct: 358 AEAEKQAAAKAKKAAEEAAKIAAEEALLAEAAAQKAAEEAKALKAAEDAAQKAAEEARLA 417 Query: 147 AKDAAQGITDK 179 + AAQ + ++ Sbjct: 418 EEAAAQKVAEE 428
>ARS2_HUMAN (Q9BXP5) Arsenite-resistance protein 2| Length = 876 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = +3 Query: 33 GNTDKAVEEAGKG-ATEVDDKAKDLAEQAKKATEEAWDGAKDAA 161 G+ ++ E+ G A E ++A++ ++ +K EE W+ KDAA Sbjct: 365 GSVSESESESESGQAEEEKEEAEEALKEKEKPKEEEWEKPKDAA 408
>APSA_EMENI (Q00083) Anucleate primary sterigmata protein A| Length = 1676 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/44 (29%), Positives = 26/44 (59%) Frame = +3 Query: 15 AAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDG 146 A EA T++ +EEA K T + ++ KDL ++ ++ ++ +G Sbjct: 56 ALEAHLAETERRLEEASKLGTALVEQRKDLEDKLREVEQQQEEG 99
>VPS36_XENLA (Q6DDF4) Vacuolar protein sorting protein 36| Length = 388 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 3 GVAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGIT 173 G+ E TDK + EA + +++ +KAK++ E +K + D D ++ T Sbjct: 160 GIERKLEEKRKETDKNISEAFEDLSKLMEKAKEMVELSKSIATKIKDKQGDISEDET 216
>FRPC_NEIMC (P55127) Iron-regulated protein frpC| Length = 1829 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 3 GVAEAAEAVSGNTDKAVEEAGKGATEVDDKAK----DLAEQAKKATEEAWDGAKDAAQ 164 G+ + +A+ ++K A A +KAK DLA+ AK+A E A A+ AAQ Sbjct: 302 GIEKGVKAIKELSEKMKNAASDLADGSAEKAKQVVEDLAQAAKEAYENAKSTAEKAAQ 359
>FRPC_NEIMB (Q9JYV5) Iron-regulated protein frpC| Length = 1829 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +3 Query: 3 GVAEAAEAVSGNTDKAVEEAGKGATEVDDKAK----DLAEQAKKATEEAWDGAKDAAQ 164 G+ + +A+ ++K A A +KAK DLA+ AK+A E A A+ AAQ Sbjct: 302 GIEKGVKAIKELSEKMKNAASDLADGSAEKAKQVVEDLAQAAKEAYENAKSTAEKAAQ 359
>ATPF_VIBVU (Q8DDH2) ATP synthase B chain (EC 3.6.3.14)| Length = 156 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 +AAE + + D A A E A ++ EQA K + D A++ AQ K+ Sbjct: 45 QAAERAAKDLDLAQANASSQLKEAKRTATEIIEQANKRKAQILDEAREDAQTERQKI 101
>DCRA_DESVH (P35841) Chemoreceptor protein A| Length = 669 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +3 Query: 57 EAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 +AG+G V D+ + LAE+ AT E QG D V Sbjct: 529 DAGRGFAVVADEVRKLAEKTMVATREVEQAIAAIQQGSNDAV 570
>IE68_SHV21 (Q01042) Immediate-early protein| Length = 407 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +3 Query: 9 AEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEA 137 AE EA + EEA + A E ++A++ E+A++ EEA Sbjct: 146 AEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAEEEAEEA 188
>YHJA_LACLA (Q9CHE9) Hypothetical UPF0337 protein yhjA| Length = 79 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = +3 Query: 33 GNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAK 152 G T+ + +A +G + DKA DLAE + + D K Sbjct: 35 GKTEGLMGKAKEGLENIKDKASDLAEDVAEKFNDTVDSVK 74
>HOB1_SCHPO (O74352) Protein hob1 (Homolog of Bin1)| Length = 466 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 42 DKAVEEAGKGATEVDDKAKDLAEQAKKATE 131 D E+AG+ ++ +AK LAE AKK T+ Sbjct: 29 DPIYEDAGRRFKSLETEAKKLAEDAKKYTD 58
>ATG3_YARLI (Q6C4Q9) Autophagy-related protein 3 (Autophagy-related E2-like| conjugation enzyme ATG3) Length = 366 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 3 GVAEAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATE 131 GVA +A +T++ E A E+DD D AE AT+ Sbjct: 177 GVANTKDADGDDTEEIAEIADSDFEELDDDDDDAAEAPATATD 219
>EFTS_MYCTU (Q10788) Elongation factor Ts (EF-Ts)| Length = 271 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +3 Query: 15 AAEAVSGNTDKAVEEAG-KGATEVDDKAKDLAEQAKKATEEAWDGAKDAA 161 A G+ DKAVE KGA KD+ ++A++AT E AKD A Sbjct: 26 ALAETDGDFDKAVEALRIKGA-------KDVGKRAERATAEGLVAAKDGA 68
>EFTS_MYCBO (Q7TXN0) Elongation factor Ts (EF-Ts)| Length = 271 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +3 Query: 15 AAEAVSGNTDKAVEEAG-KGATEVDDKAKDLAEQAKKATEEAWDGAKDAA 161 A G+ DKAVE KGA KD+ ++A++AT E AKD A Sbjct: 26 ALAETDGDFDKAVEALRIKGA-------KDVGKRAERATAEGLVAAKDGA 68
>RRF_XANCP (Q8PAV6) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 185 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 12 EAAEAVSGNTDKAVEEAGKGATEVDDKAKDLAEQAKKATEEAWDGAKDAAQGITDK 179 E +++V G + A + + + KDL + K+ TE+ GA+D Q +TDK Sbjct: 112 ELSKSVHGEGEDAKVAIRNIRRDANQQVKDLLKD-KQVTEDEARGAEDDIQKLTDK 166
>RRF_PSEF5 (Q4KHH3) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 185 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 54 EEAGKGATEVDDKAKDLAEQAKKATEE 134 +E +G+ E+D KD Q KATEE Sbjct: 151 DEERRGSAEIDKLIKDFEAQIAKATEE 177
>RRF_BDEBA (P61302) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 186 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +3 Query: 84 DDKAKDLAEQAKKATEEAWDGAKDAAQGITDKV 182 +++ KDLA+Q KK EEA + A + D+V Sbjct: 108 EERRKDLAKQVKKIAEEARVAVRMARRDANDEV 140
>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 39 TDKAVEEAGKGATEVDDKAKDLAEQAKKATEEA 137 +D+ +EA + E + AKD AE +KA EEA Sbjct: 147 SDRVRDEAIQRKREEEQAAKDRAEAERKAAEEA 179
>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 39 TDKAVEEAGKGATEVDDKAKDLAEQAKKATEEA 137 +D+ +EA + E + AKD AE +KA EEA Sbjct: 147 SDRVRDEAIQRKREEEQAAKDRAEAERKAAEEA 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,981,281 Number of Sequences: 219361 Number of extensions: 300740 Number of successful extensions: 1610 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1608 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
