>Y3806_PSEAE (Q51385) Hypothetical UPF0063 protein PA3806|
          Length = 379

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +1

Query: 22  PHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           PHSG  ++   +  I  F++ML + G  V VR +RGDD  AACGQL
Sbjct: 306 PHSG--YERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQL 349

>YFGB_ECOLI (P36979) Hypothetical UPF0063 protein yfgB|
          Length = 384

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +1

Query: 22  PHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           P  G+ +  + + +I  F  +L+  G T +VR +RGDD  AACGQL
Sbjct: 313 PFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQL 358

>Y286_BUCAI (P57373) Hypothetical UPF0063 protein BU286|
          Length = 363

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +1

Query: 28  SGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           SG  F  +  ++I  F N+L + G T  +R +RG+D  AACGQL
Sbjct: 310 SGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAACGQL 353

>Y265_BUCBP (Q89AK8) Hypothetical UPF0063 protein bbp_265|
          Length = 373

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 21/44 (47%), Positives = 26/44 (59%)
 Frame = +1

Query: 28  SGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           SGS +  + D  I  F N+LI+ G  V +R  RG D  AACGQL
Sbjct: 314 SGSNYICSNDITINNFANILIKKGCIVTIRKIRGYDINAACGQL 357

>Y365_HAEIN (P44665) Hypothetical UPF0063 protein HI0365|
          Length = 390

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 22  PHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           P   + +  + + +I  F+  L++   TV++R +RGDD  AACGQL
Sbjct: 318 PFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQL 363

>Y1428_HELPY (O25970) Hypothetical UPF0063 protein HP1428|
          Length = 357

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +1

Query: 13  LSXPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQLGE 165
           L  PH GS+F+    E    F + L   GL   +R S+  D  AACGQL E
Sbjct: 300 LFNPHEGSKFERPSLENARMFADFLNSKGLLCTIRESKALDIEAACGQLRE 350

>YE28_HELPJ (Q9ZJI4) Hypothetical UPF0063 protein jhp_1325|
          Length = 357

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = +1

Query: 13  LSXPHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQLGE 165
           L  PH GS+F+    E    F + L   GL   +R S+  D  AACGQL E
Sbjct: 300 LFNPHEGSKFERPSLESARMFADFLNAKGLLCTIRESKALDIEAACGQLRE 350

>YLON_BACSU (O34617) Hypothetical UPF0063 protein yloN|
          Length = 363

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 49  TPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           TP ++I  F   L   G+ V +R  +G D  AACGQL
Sbjct: 317 TPRDQIFAFEKTLKSRGVNVTIRREQGHDIDAACGQL 353

>Y2904_MYCBO (P0A645) Hypothetical UPF0063 protein Mb2904c|
          Length = 364

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 22  PHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQLGEPG 171
           P  GS +  +P     EF   +   G++  VR +RG +  AACGQL   G
Sbjct: 314 PTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLAAVG 363

>Y2880_MYCTU (P0A644) Hypothetical UPF0063 protein Rv2880c/Rv2879c/MT2947|
          Length = 364

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 22  PHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQLGEPG 171
           P  GS +  +P     EF   +   G++  VR +RG +  AACGQL   G
Sbjct: 314 PTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLAAVG 363

>Y275_BUCAP (Q8K9P5) Hypothetical UPF0063 protein BUsg275|
          Length = 363

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 73  FRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           F N+L + G    +R +RG D  AACGQL
Sbjct: 325 FANILRKKGFNTTIRKNRGQDIGAACGQL 353

>Y098_SYNY3 (Q55880) Hypothetical UPF0063 protein sll0098|
          Length = 350

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 22  PHSGSQFKPTPDEKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQL 159
           P S   ++   + +I +F  +L    + V VR SRG    AACGQL
Sbjct: 290 PISEVDYQRPTEAQINQFAQVLSDHRIAVSVRYSRGVQADAACGQL 335

>POMT2_DROME (Q9W5D4) Protein O-mannosyl-transferase 2 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           2) (dPOMT2)
          Length = 765

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 113 TITVRPDWINMLRNSIIFSSGVGLNWDPLWGIERDEV 3
           T+T R  +I++L+N  + SSG  L   P WG E+ EV
Sbjct: 450 TVTSRLKFIHLLQNCALTSSGKQL---PKWGFEQQEV 483

>NMT2_ARATH (Q94L32) Probable glycylpeptide N-tetradecanoyltransferase 2 (EC|
           2.3.1.97) (Peptide N-myristoyltransferase 2)
           (Myristoyl-CoA:protein N-myristoyltransferase 2) (NMT 2)
           (Type I N-myristoyltransferase 2)
          Length = 430

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 149 QAAIWSSPLLSRTITVRPDWINMLRNSIIFSSGV 48
           QAA  SS +LSR +T   DW+ ML    +   G+
Sbjct: 211 QAAYTSSHILSRPVTTSRDWVRMLNPKKLIDVGL 244

>ENGA_RICCN (Q92GU2) GTP-binding protein engA|
          Length = 447

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 259 FYYCTDYYVFGFRRRPEISQEHGAAVADSHQALLAARRQPSGHRLCLAAP 110
           F +  +YY  GF     IS EHG  + D +  ++A   +    +  +A P
Sbjct: 125 FDFDKEYYKLGFDSMIAISAEHGTGLIDLYDEIIAKLPEEESIKTNIADP 174

>PHAB_PSEOL (P26495) Poly(3-hydroxyalkanoate) depolymerase (EC 3.1.1.-) (PHA|
           depolymerase) (PHB depolymerase)
          Length = 283

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 277 IVPRHLFYYCTDYYVFGFRRRPEISQEHGAAV 182
           + P H+       Y  GFRR PE++ +H + V
Sbjct: 151 VQPSHVIRIAPTIYGGGFRRDPELAMQHASKV 182

>LEU1_THETH (Q56216) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
           (Fragment)
          Length = 331

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 226 FRRRPEISQEHGAAVADSHQALLAARRQPSGH 131
           F R  EI+++ G   A+  QAL+ + R+P+ H
Sbjct: 171 FARFKEIAEKKGPLSAEELQALVESEREPTSH 202

>PDXJ_NEIG1 (Q5F6P1) Pyridoxal phosphate biosynthetic protein pdxJ (PNP|
           synthase)
          Length = 242

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 58  EKIIEFRNMLIQSGLTVMVRLSRGDDQMAACGQLGEP 168
           EKI EF  +L  +G+ V + +   D Q+ A   +G P
Sbjct: 111 EKIAEFAKILTDAGIRVSLFIDADDRQIQAARDVGAP 147

>US26_HCMVA (P09699) Hypothetical protein HHLF5|
          Length = 603

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 104 VRPDWINMLRNSIIFSSGVG-LNWDP 30
           VRPDW +M RNS+   SG   ++WDP
Sbjct: 390 VRPDWCSM-RNSLDEVSGTADVSWDP 414


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,495,979
Number of Sequences: 219361
Number of extensions: 922367
Number of successful extensions: 2372
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2372
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)