ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4h16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192267.1| Oryza sativa (japonica cultivar-group), predic... 192 5e-46
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 192 5e-46
3dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 192 5e-46
4dbj|AK065688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 5e-46
5gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cance... 40 4.9
6gb|AC153790.10| Mus musculus chromosome 1, clone RP23-424F11, co... 40 4.9
7gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complet... 40 4.9 
>ref|NM_192267.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score =  192 bits (97), Expect = 5e-46
 Identities = 188/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    caacctcatctctttcaatnccccatagcgggtcccagttcaagccgacgcccgatgaga 61
            ||||||||||||||||||| |||||||||||||| || |||||||| || || |||||||
Sbjct: 969  caacctcatctctttcaat-ccccatagcgggtcacaattcaagcccactcctgatgaga 1027

                                                                        
Query: 62   aaattatcgagttccgtaacatgttaatccaatctggccttaccgttatggtgcggctaa 121
            ||||||| ||||| |||||||| ||||| |||  |||||||   ||  | || ||||| |
Sbjct: 1028 aaattattgagtttcgtaacattttaattcaagatggccttgttgtatttgttcggctca 1087

                                                                        
Query: 122  gcagaggcgatgaccagatggctgcctgcgggcagctaggagagcctggtgactatcagc 181
            ||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 1088 gcagaggggatgatcagatggctgcctgtggacagctaggagagcctggggactaccagc 1147

                                                 
Query: 182  taccgctgctccgtgttcctgagaaatttcaggtcgc 218
            |||| ||||||||||| ||||||||||| ||||||||
Sbjct: 1148 tacccctgctccgtgtacctgagaaattccaggtcgc 1184
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  192 bits (97), Expect = 5e-46
 Identities = 188/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                            
Query: 2        caacctcatctctttcaatnccccatagcgggtcccagttcaagccgacgcccgatgaga 61
                ||||||||||||||||||| |||||||||||||| || |||||||| || || |||||||
Sbjct: 25746472 caacctcatctctttcaat-ccccatagcgggtcacaattcaagcccactcctgatgaga 25746414

                                                                            
Query: 62       aaattatcgagttccgtaacatgttaatccaatctggccttaccgttatggtgcggctaa 121
                ||||||| ||||| |||||||| ||||| |||  |||||||   ||  | || ||||| |
Sbjct: 25746413 aaattattgagtttcgtaacattttaattcaagatggccttgttgtatttgttcggctca 25746354

                                                                            
Query: 122      gcagaggcgatgaccagatggctgcctgcgggcagctaggagagcctggtgactatcagc 181
                ||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 25746353 gcagaggggatgatcagatggctgcctgtggacagctaggagagcctggggactaccagc 25746294

                                                     
Query: 182      taccgctgctccgtgttcctgagaaatttcaggtcgc 218
                |||| ||||||||||| ||||||||||| ||||||||
Sbjct: 25746293 tacccctgctccgtgtacctgagaaattccaggtcgc 25746257
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score =  192 bits (97), Expect = 5e-46
 Identities = 188/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                         
Query: 2     caacctcatctctttcaatnccccatagcgggtcccagttcaagccgacgcccgatgaga 61
             ||||||||||||||||||| |||||||||||||| || |||||||| || || |||||||
Sbjct: 48936 caacctcatctctttcaat-ccccatagcgggtcacaattcaagcccactcctgatgaga 48878

                                                                         
Query: 62    aaattatcgagttccgtaacatgttaatccaatctggccttaccgttatggtgcggctaa 121
             ||||||| ||||| |||||||| ||||| |||  |||||||   ||  | || ||||| |
Sbjct: 48877 aaattattgagtttcgtaacattttaattcaagatggccttgttgtatttgttcggctca 48818

                                                                         
Query: 122   gcagaggcgatgaccagatggctgcctgcgggcagctaggagagcctggtgactatcagc 181
             ||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 48817 gcagaggggatgatcagatggctgcctgtggacagctaggagagcctggggactaccagc 48758

                                                  
Query: 182   taccgctgctccgtgttcctgagaaatttcaggtcgc 218
             |||| ||||||||||| ||||||||||| ||||||||
Sbjct: 48757 tacccctgctccgtgtacctgagaaattccaggtcgc 48721
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>dbj|AK065688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042L10, full
            insert sequence
          Length = 1510

 Score =  192 bits (97), Expect = 5e-46
 Identities = 188/217 (86%), Gaps = 1/217 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    caacctcatctctttcaatnccccatagcgggtcccagttcaagccgacgcccgatgaga 61
            ||||||||||||||||||| |||||||||||||| || |||||||| || || |||||||
Sbjct: 1044 caacctcatctctttcaat-ccccatagcgggtcacaattcaagcccactcctgatgaga 1102

                                                                        
Query: 62   aaattatcgagttccgtaacatgttaatccaatctggccttaccgttatggtgcggctaa 121
            ||||||| ||||| |||||||| ||||| |||  |||||||   ||  | || ||||| |
Sbjct: 1103 aaattattgagtttcgtaacattttaattcaagatggccttgttgtatttgttcggctca 1162

                                                                        
Query: 122  gcagaggcgatgaccagatggctgcctgcgggcagctaggagagcctggtgactatcagc 181
            ||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct: 1163 gcagaggggatgatcagatggctgcctgtggacagctaggagagcctggggactaccagc 1222

                                                 
Query: 182  taccgctgctccgtgttcctgagaaatttcaggtcgc 218
            |||| ||||||||||| ||||||||||| ||||||||
Sbjct: 1223 tacccctgctccgtgtacctgagaaattccaggtcgc 1259
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>gb|AC158609.10| Mus musculus 6 BAC RP24-89F5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    gtgttcctgagaaatttcag 213
              ||||||||||||||||||||
Sbjct: 143400 gtgttcctgagaaatttcag 143381
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>gb|AC153790.10| Mus musculus chromosome 1, clone RP23-424F11, complete sequence
          Length = 189707

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    gaacaatctgataaagacaa 290
              ||||||||||||||||||||
Sbjct: 138379 gaacaatctgataaagacaa 138398
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>gb|AC114921.5| Mus musculus BAC clone RP23-202P9 from 6, complete sequence
          Length = 207908

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  gtgttcctgagaaatttcag 213
            ||||||||||||||||||||
Sbjct: 9337 gtgttcctgagaaatttcag 9356


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,499,312
Number of Sequences: 3902068
Number of extensions: 2499312
Number of successful extensions: 40069
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40047
Number of HSP's gapped (non-prelim): 18
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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