ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4h13 |
|---|---|
| Clone Library Name | barley_pub |
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 177 bits (449), Expect = 1e-44 Identities = 87/87 (100%), Positives = 87/87 (100%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE Sbjct: 309 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 368 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLSEEASDTEKARKVWELSEKLVGLA Sbjct: 369 NQLSEEASDTEKARKVWELSEKLVGLA 395
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 169 bits (428), Expect = 3e-42 Identities = 81/87 (93%), Positives = 86/87 (98%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR+LFPPFQK+IT+GYVSE+EAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE Sbjct: 312 LFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 371 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKARKVWELSEKLVGLA Sbjct: 372 NQLSQEASDAEKARKVWELSEKLVGLA 398
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 167 bits (422), Expect = 1e-41 Identities = 81/87 (93%), Positives = 84/87 (96%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVSEPSLTKSGVYWSWNK+SASFE Sbjct: 312 LFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFE 371 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLSEEASD EKARKVWE+SEKLVGLA Sbjct: 372 NQLSEEASDVEKARKVWEVSEKLVGLA 398
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 164 bits (414), Expect = 1e-40 Identities = 79/87 (90%), Positives = 83/87 (95%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQKYITKGYVSEEE+GKRLAQVVS+PSLTKSGVYWSWN SASFE Sbjct: 313 LFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFE 372 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKARKVWE+SEKLVGLA Sbjct: 373 NQLSQEASDAEKARKVWEVSEKLVGLA 399
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 163 bits (413), Expect = 2e-40 Identities = 78/87 (89%), Positives = 84/87 (96%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVS+PSL KSGVYWSWN NS+SFE Sbjct: 315 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFE 374 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKA+K+WE+SEKLVGLA Sbjct: 375 NQLSKEASDAEKAKKLWEVSEKLVGLA 401
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 163 bits (413), Expect = 2e-40 Identities = 78/87 (89%), Positives = 83/87 (95%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQVV++PSLTKSGVYWSWNK SASFE Sbjct: 319 LFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFE 378 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKAR+VWE+SEKLVGLA Sbjct: 379 NQLSQEASDVEKARRVWEVSEKLVGLA 405
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 163 bits (412), Expect = 2e-40 Identities = 79/87 (90%), Positives = 82/87 (94%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVS+PSLTKSGVYWSWN SASFE Sbjct: 315 LFREHIPLFRALFPPFQKYITKGYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFE 374 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLSEEASD EKARKVWE+SEKLVGLA Sbjct: 375 NQLSEEASDVEKARKVWEISEKLVGLA 401
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 162 bits (409), Expect = 4e-40 Identities = 77/87 (88%), Positives = 84/87 (96%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV+EPSLTKSGVYWSWNK+SASFE Sbjct: 302 LFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFE 361 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKARKVWELSEKLVGLA Sbjct: 362 NQLSQEASDPEKARKVWELSEKLVGLA 388
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 161 bits (408), Expect = 6e-40 Identities = 77/87 (88%), Positives = 83/87 (95%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV EPSLTKSGVYWSWNK+SASFE Sbjct: 227 LFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFE 286 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKARKVWELSEKLVGLA Sbjct: 287 NQLSQEASDPEKARKVWELSEKLVGLA 313
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 159 bits (403), Expect = 2e-39 Identities = 76/87 (87%), Positives = 83/87 (95%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV+EP LTKSGVYWSWNK+SASFE Sbjct: 302 LFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFE 361 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQLS+EASD EKARKVWELSEKLVGLA Sbjct: 362 NQLSQEASDPEKARKVWELSEKLVGLA 388
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 147 bits (372), Expect = 9e-36 Identities = 68/86 (79%), Positives = 79/86 (91%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFR H+ LFR LFPPFQKYITKGYVSEEEAGKR+AQVVS+P L+KSGVYWSWNK+S SFE Sbjct: 372 LFRNHVTLFRTLFPPFQKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFE 431 Query: 181 NQLSEEASDTEKARKVWELSEKLVGL 258 N+LSEEAS+ EKA+++WELSE+L GL Sbjct: 432 NELSEEASNPEKAKRLWELSERLSGL 457
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 137 bits (344), Expect = 2e-32 Identities = 60/87 (68%), Positives = 74/87 (85%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFE 180 LFREH+PLF+ LFPPFQKYITKGYVSEEEAG+RLA V+S+P L KSG YWSW+ + SF+ Sbjct: 310 LFREHVPLFKTLFPPFQKYITKGYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFD 369 Query: 181 NQLSEEASDTEKARKVWELSEKLVGLA 261 NQ+SEE +D KA K+W++S KLVGL+ Sbjct: 370 NQVSEEVADDSKASKLWDISAKLVGLS 396
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 101 bits (252), Expect = 7e-22 Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 4/91 (4%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSW----NKNS 168 LFR +P+F+ +FP FQK IT GYVS+E AG+R AQVV++P +SGV+WSW + Sbjct: 232 LFRNSLPVFQKVFPWFQKNITGGYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGR 291 Query: 169 ASFENQLSEEASDTEKARKVWELSEKLVGLA 261 SF +LSE+ +D KA+++WELSEKLVGLA Sbjct: 292 ESFVQELSEKVTDDAKAKRMWELSEKLVGLA 322
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 101 bits (251), Expect = 9e-22 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 4/90 (4%) Frame = +1 Query: 1 LFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSW-NKNSA-- 171 LFR H LFR +FP FQK +TKGYVS+E AG+R+A VV++ SGV+WSW N+ A Sbjct: 232 LFRNHYSLFRTIFPWFQKNVTKGYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGR 291 Query: 172 -SFENQLSEEASDTEKARKVWELSEKLVGL 258 +F +LSE+ SD +KA+++W+LSEKLVGL Sbjct: 292 EAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321
>ALA8_ARATH (Q9LK90) Putative phospholipid-transporting ATPase 8 (EC 3.6.3.1)| (Aminophospholipid flippase 8) Length = 1189 Score = 35.4 bits (80), Expect = 0.063 Identities = 25/111 (22%), Positives = 46/111 (41%) Frame = +1 Query: 64 KGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSE 243 KG +++EE G + + E K +W + NQ + E +K +V + Sbjct: 461 KGLMTQEEVGDNESLSIKEQKAVKGFNFWDERIVDGQWINQPNAEL--IQKFFRVLAICH 518 Query: 244 KLVGLA*SPTGRLSGEVSNPDRSSFRTKLRNFVLLFSSKKKGKIIVGHVSH 396 + S TG ++ E +PD ++F R F S+ + I + + H Sbjct: 519 TAIPDVNSDTGEITYEAESPDEAAFVIASRELGFEFFSRSQTSISLHEIDH 569
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 33.1 bits (74), Expect = 0.31 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 13 HIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTK-SGVYWSWNKNSASFENQL 189 HIPL L+ P F + + E + + S P + SG Y+ K E +L Sbjct: 259 HIPL--LVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFGDCK-----EEEL 311 Query: 190 SEEASDTEKARKVWELSEKLVGL 258 +A D ARK+W++SE +VGL Sbjct: 312 LPKAMDESVARKLWDISEVMVGL 334
>YEL8_YEAST (P39943) Hypothetical 43.1 kDa protein in GAL83-YPT8 intergenic| region Length = 394 Score = 31.6 bits (70), Expect = 0.91 Identities = 37/121 (30%), Positives = 52/121 (42%) Frame = -1 Query: 443 PLRT*PGAPHT*PSSLCETCPTIIFPFFLLEKRSTKFRNLVRNDDRSGFETSPESRPVGD 264 P+ P PH PSSL T T I + ++ F+ L +SGF P S P Sbjct: 150 PVINIPNDPHPIPSSLSTTSITSIASVY---PSTSPFQYL-----KSGFPEDPASTPY-V 200 Query: 263 HASPTSFSLSSQTFLAFSVSLASSESWFSKDAEFLFQLQ*TPDLVRLGSLTTCASLLPAS 84 H+S +S +L L+S+ S FSK L + PD + + ASLL + Sbjct: 201 HSSGSSLALG---------ELSSNSSIFSKSRRNLAAMS-GPDSLSSSKNQSSASLLSQT 250 Query: 83 S 81 S Sbjct: 251 S 251
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +1 Query: 190 SEEASDTEKARKVWELSEKLV 252 SEEA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = +1 Query: 112 VSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 261 V+E SG Y+ + A S EA D E AR++W S +LVGLA Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLA 320
>DPO3B_HELPY (O25242) DNA polymerase III beta subunit (EC 2.7.7.7)| Length = 374 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +1 Query: 37 FPPFQKYITKGYVSEEEAGK-RLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTE 213 +P +QK + K Y+S GK + + S S + + KN+A FE+ L E S+T Sbjct: 242 YPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSSTIKLTLEKNNALFES-LDSEHSETA 300 Query: 214 K 216 K Sbjct: 301 K 301
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +1 Query: 178 ENQLSEEASDTEKARKVWELSEKLVGL 258 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>CAPZA_NEUCR (Q9P5K9) Probable F-actin capping protein alpha subunit| Length = 269 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/64 (25%), Positives = 32/64 (50%) Frame = +1 Query: 22 LFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEA 201 L L P FQKY + + + + G ++S S + G Y+ +S+ + ++++A Sbjct: 33 LLNELGPAFQKYNEEQFTTVKLPGGSQPVIISSHSSLEDGRYYDVESSSSFAYDHITQKA 92 Query: 202 SDTE 213 SD + Sbjct: 93 SDVQ 96
>YLJ2_CAEEL (P34367) Hypothetical protein C50C3.2 in chromosome III| Length = 2107 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 82 EEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWE 234 +E+GK + + + S+ WN+ SA+F+ L A+DT KV E Sbjct: 119 DESGKEIFDEIRKCSMV-------WNEISATFQQMLDPTATDTSNYEKVHE 162
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = +1 Query: 112 VSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGL 258 V+E SG Y+ K A + EA D E AR++W S +LVGL Sbjct: 276 VAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVGL 319
>TRMU_LACAC (Q5FKU0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -1 Query: 308 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 180 +SG +PE + VG+HA +++ + L + S++ WF Sbjct: 218 KSGKMVTPEGKVVGEHAGLMYYTIGQRQGLGLGSTKESTDPWF 260
>CN094_HUMAN (Q9H6D7) Protein C14orf94| Length = 363 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +1 Query: 190 SEEASDTEKARKVWELSEKLVG 255 S+ S+T KA KVW+L+E LVG Sbjct: 187 SDADSETVKAAKVWKLAEVLVG 208
>PTGDS_RAT (P22057) Prostaglandin-H2 D-isomerase precursor (EC 5.3.99.2)| (Lipocalin-type prostaglandin-D synthase) (Glutathione-independent PGD synthetase) (Prostaglandin-D2 synthase) (PGD2 synthase) (PGDS2) (PGDS) Length = 189 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -1 Query: 215 FSVSLASSESWFSKDAEFLFQLQ*TPDLVRLGSLTTCASLLPASSSDTYPLVM 57 +S LAS+ SWF + E LF Q G L ++ L + +T +V+ Sbjct: 44 YSAGLASNSSWFREKKELLFMCQTVVAPSTEGGLNLTSTFLRKNQCETKVMVL 96
>DAPA_XANCP (Q8P9V6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -3 Query: 156 PAPVDAGLGEAGLADDLRQPLAGLLLGHVPLGDVL 52 P PV A L AG+ LR PL L H P D L Sbjct: 250 PIPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRL 284
>DAPA_XANAC (Q8PLN5) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -3 Query: 156 PAPVDAGLGEAGLADDLRQPLAGLLLGHVPLGDVL 52 P PV A L AG+ LR PL L H P D L Sbjct: 250 PIPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRL 284
>TRMU_LACJO (Q74JW9) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = -1 Query: 308 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 180 +SG +P+ + VG+HA +++ ++ L + S++ WF Sbjct: 218 QSGKMVTPDGKVVGEHAGLMYYTIGQRSGLGLGSTKESTDPWF 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,014,775 Number of Sequences: 219361 Number of extensions: 848772 Number of successful extensions: 3199 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3192 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
